BAC Information

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BAC

Clone NameB6Ng01-316F12
Chromosome10 (Build37)14 (Build37)
Map Location 128,500,987 - 128,502,06825,803,764 - 25,804,292
singlet/doubletsingletsinglet
Overlap geneEG546487
Upstream genePtges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733
Downstream geneOlfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316F12.bB6Ng01-316F12.g
ACCGA106763GA106764
length1,076558
definitionB6Ng01-316F12.b B6Ng01-316F12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(128,500,987 - 128,502,068)(25,803,764 - 25,804,292)
sequence
gaattcagtcaaagtctgatttttaatggctaacactggctgcctgtgaa
tacacagaggggttgagtcagtgataggacaggagtccagaatatttaag
atgggttaatctttttctacagaattgcaggaaacgtctttccctcaggc
tgcaggagccatcttactagcctgagaattttctatggtgcttttcttta
aaaaaaaattttttttttttagttataatttctgcatgcttttcttctaa
acaaacacccaaattattttctctttttaagtttcacttgaactagcctc
tacttaaaaacaatttagttacattttttgacaatttcatttatgtttat
aatgcattctgcttattgtctctcccccaccctcctttatcacccacccc
tcctctcaacctgtcagtttcccaggatatttagttttgtcctctgaatg
atccacttagtttaaccaaggccaattgtttgatgttggattggaactat
tcattggagactggtgagggtatcagagagtacacaatagaagcatcctt
gtacttttgatcttttattatgttaattaattctgtaatgatgtcttgct
tatattactcacttggctccagtgggagaagaaatgaggttaactcacaa
ttgaagaaccttttagtaggcaaatgatttcattaaaattatagttaagt
gaaaagtccccaccttccatctgagttttgaagtttgtggtccatcattc
ccagtatcctttctgttccttggctttggggatcttcttgtcatgtccca
tttcttccatcttagatggtatcagcaaaagagcagatgatgcatctcct
gttagattacagttcctgcatttctcctgtacttatattattggtaagtg
gttttattgtggctagaaaacaaatataaagtcaaaagataaaaacttca
tttaagagtttctgataaaactttagatagatggggttgtttacatttta
ctttgagaacttgaggaatcagcttcatgtagatggaggagtattttctg
atagttatggaattattatagagccc
aataaccactcaagctcagtacttggccagctacaagcctgtattaacta
ccttccaaaacaaaagagataagtgaagctagcaccccttattaaaaagt
ttctctctttacagcaaatggagacaatcacagaaaactgcaacagaaca
caatgcaatggaaacaggaaacccaggcacagtggaaaaaatctacatca
cagttctcaaatctctgtaacatcatggaagataaagcaaaaagactgta
agagtcagaataccaggatgtctgctctgcattagtctctcctaaaaaat
gtcgtcatacacaagtttgaaaaatagcaatgtcaatggacatgctcatg
tggaaggggggacatttcacggagtcacacccataaacaaagaacagcag
gccaataatgactgctgggagaagaattaacctcattaaggcataaactt
gcttactgattatccattgcagaatcatcagctcttaaaccatatacatg
caaacaacaaaagcacactcaggagatgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_128500987_128502068
seq2: B6Ng01-316F12.b_46_1121

seq1  GAATTCAGTCAAAGTCTGATTTTTAATGGCTAACACTGGCTGCCTGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCAAAGTCTGATTTTTAATGGCTAACACTGGCTGCCTGTGAA  50

seq1  TACACAGAGGGGTTGAGTCAGTGATAGGACAGGAGTCCAGAATATTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGGGGTTGAGTCAGTGATAGGACAGGAGTCCAGAATATTTAAG  100

seq1  ATGGGTTAATCTTTTTCTACAGAATTGCAGGAAACGTCTTTCCCTCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTAATCTTTTTCTACAGAATTGCAGGAAACGTCTTTCCCTCAGGC  150

seq1  TGCAGGAGCCATCTTACTAGCCTGAGAATTTTCTATGGTGCTTTTCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAGCCATCTTACTAGCCTGAGAATTTTCTATGGTGCTTTTCTTTA  200

seq1  AAAAAAAATTTTTTTTTTTTAGTTATAATTTCTGCATGCTTTTCTTCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATTTTTTTTTTTTAGTTATAATTTCTGCATGCTTTTCTTCTAA  250

seq1  ACAAACACCCAAATTATTTTCTCTTTTTAAGTTTCACTTGAACTAGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACCCAAATTATTTTCTCTTTTTAAGTTTCACTTGAACTAGCCTC  300

seq1  TACTTAAAAACAATTTAGTTACATTTTTTGACAATTTCATTTATGTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAAAACAATTTAGTTACATTTTTTGACAATTTCATTTATGTTTAT  350

seq1  AATGCATTCTGCTTATTGTCTCTCCCCCACCCTCCTTTATCACCCACCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTCTGCTTATTGTCTCTCCCCCACCCTCCTTTATCACCCACCCC  400

seq1  TCCTCTCAACCTGTCAGTTTCCCAGGATATTTAGTTTTGTCCTCTGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCAACCTGTCAGTTTCCCAGGATATTTAGTTTTGTCCTCTGAATG  450

seq1  ATCCACTTAGTTTAACCAAGGCCAATTGTTTGATGTTGGATTGGAACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTTAGTTTAACCAAGGCCAATTGTTTGATGTTGGATTGGAACTAT  500

seq1  TCATTGGAGACTGGTGAGGGTATCAGAGAGTACACAATAGAAGCATCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGAGACTGGTGAGGGTATCAGAGAGTACACAATAGAAGCATCCTT  550

seq1  GTACTTTTGATCTTTTATTATGTTAATTAATTCTGTAATGATGTCTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTTGATCTTTTATTATGTTAATTAATTCTGTAATGATGTCTTGCT  600

seq1  TATATTACTCACTTGGCTCCAGTGGGAGAAGAAATGAGGTTAACTCACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTACTCACTTGGCTCCAGTGGGAGAAGAAATGAGGTTAACTCACAA  650

seq1  TTGAAGAACCTTTTAGTAGGCAAATGATTTCATTAAAATTATAGTTAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAACCTTTTAGTAGGCAAATGATTTCATTAAAATTATAGTTAAGT  700

seq1  GAAAAGTCCCCACCTTCCATCTGAGTTTTGAAGTTTGTGGTCCATCATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCCCCACCTTCCATCTGAGTTTTGAAGTTTGTGGTCCATCATTC  750

seq1  CCAGTATCCTTTCTGTTCCTTGGCTTTGGGGATCTTCTTGTCATGTCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATCCTTTCTGTTCCTTGGCTTTGGGGATCTTCTTGTCATGTCCCA  800

seq1  TTTCTTCCATCTTAGATGGTATCAGCAAAAGAGCAGATGATGCATCTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCATCTTAGATGGTATCAGCAAAAGAGCAGATGATGCATCTCCT  850

seq1  GTTAGATTACAGTTCCTGCATTTCTCCTGTACTTATATTTATTGGTAAGT  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTTAGATTACAGTTCCTGCATTTCTCCTGTACTTATA-TTATTGGTAAGT  899

seq1  GGTTTTATTGTGGCTAGAAAACAAAATATAAAGTCAAAAGATAAAAACTT  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGTTTTATTGTGGCTAGAAAAC-AAATATAAAGTCAAAAGATAAAAACTT  948

seq1  CATTTAAGAGTTTCTGATAAAAACTTTAGATAGATGGGGTTGTTTACATT  1000
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CATTTAAGAGTTTCTGAT-AAAACTTTAGATAGATGGGGTTGTTTACATT  997

seq1  TTACTTTGAGAACTTGAGGAATCAGCTTTCATGTAGAT-GAGGAGTATTT  1049
      |||||||||||||||||||||||||| ||||||||||| |||||||| ||
seq2  TTACTTTGAGAACTTGAGGAATCAGC-TTCATGTAGATGGAGGAGTA-TT  1045

seq1  TTCTGAATAGTTATGGAATTATTATAAGAGCCC  1082
      ||||| ||||||||||||||||||| |||||||
seq2  TTCTG-ATAGTTATGGAATTATTAT-AGAGCCC  1076

seq1: chr14_25803764_25804292
seq2: B6Ng01-316F12.g_571_627 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACGCACGCACGCACG  50
          ||||||||||||||||||||||||||||||||              
seq2  ----CACACACACACACACACACACACACACACACA--------------  32

seq1  CACGCACGCACGCACGCGAATG-GCTGACCTGGAAGCAGTTGGGCAACCT  99
                  | |  || || |||    | |                 
seq2  -----------TCTCCTGAGTGTGCTTTTGTTGTTT--------------  57

seq1  AATAAAATACTATTGTCTGTGAATGCATGTTCTCCATAATACCCAGTCGC  149
                                                        
seq2  --------------------------------------------------  57

seq1  CCTCATTGGTGCCTGGACCACTCTGTGTATCTCAAGCAGAGGCAACACAC  199
                                                        
seq2  --------------------------------------------------  57

seq1  ACACACACACACATGGCTCTTTCTCTTATTCCCCAACACCACTCAATGGC  249
                                                        
seq2  --------------------------------------------------  57

seq1  CGGCATTTAGATTTCTGCCCCTCTGATAGGTAAAAATTAGCATCTCACCA  299
                                                        
seq2  --------------------------------------------------  57

seq1  CGATCTAAATTTGCATTTATCTTCCTAGGAATTGGCTTCAGCACATTGCA  349
                                                        
seq2  --------------------------------------------------  57

seq1  CCTGGTTAACAGCATCCACATATGCTTCCACAGTGGGGGGACAGCACACA  399
                                                        
seq2  --------------------------------------------------  57

seq1  GCATCCAGTCTCTGGGCTTTCCCTCCGAGCACTATAGGATATGGATTGGG  449
                                                        
seq2  --------------------------------------------------  57

seq1  GAGATTGTGACAACCTAAGTTTCAATTACTCTTTCCCAGGTAGGGATTTA  499
                                                        
seq2  --------------------------------------------------  57

seq1  TCTTGTTGCTGTCATTGGCTTTTGTTGTTT  529
                                    
seq2  ------------------------------  57