BAC Information

Click to search

BAC

Clone NameB6Ng01-317N01
Chromosome14 (Build37)
Map Location 98,253,098 - 98,430,057
singlet/doubletdoublet
Overlap geneDach1
Upstream geneLOC668654, EG668659
Downstream geneLOC635593, LOC619716, LOC100043787
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317N01.bB6Ng01-317N01.g
ACCGA107867GA107868
length1,0801,157
definitionB6Ng01-317N01.b B6Ng01-317N01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,428,968 - 98,430,057)(98,253,098 - 98,254,273)
sequence
gaattcttctatctctgctttccagagccctggtgtttcagtaaaattca
tggatataccatgggtccatgtgtgatagacttctaaatgcagatcctaa
tagttgcacaacatgcacccagtgagccctatcataagcctcagaatgaa
agtactttaatgtaattcagcaatgggaacgtatgttaaaaattcacatt
ttgcttggaataatattgtggagttgaaggaaattaccatagccaagtaa
tggtgctccctggaaagtgtttagcagatgaaataatgaagaaaatacta
ttcataccttcgaggaaattaatttcatttttgtgttttgccagaattca
agaatggacgagctccaaagaaatcacagcacatgttttcaaaattctaa
tactaaaaaaaaaaaaaaaaaaaaaaagcagatgaattggaaaataatgt
gctactgttttgaatatttcaaatcagcatatttgcaaataaacacgtta
ttgaaattttaactacagaaactaactaaagtgtattttcatcattgtac
agataaaaaaaatatttactcagttaatttcatcaataatgtctcaataa
atttacgaagggttagacacacatataatattaattttgacctttttgat
tttactcaggaagtaaaatgttctttataaaatgccacttaaaaattctg
gagtgatgtagagttctgtccttagggaatattcatataagaaagtagtg
cattccttgcctcagtgactaaagatgattctgccaaccagctagcctga
gtttcatccgtagaacacacagggcagacgtagacaaccaatgtctacta
gtatgtcctctgacctccatatccatagcatagcacaagaacatgtatag
agttcttgctgttagtattgagaaagatggctatggggaagagagatgaa
tgtctagaagcgaacactgtgagcactgaataattcattatttaccacat
aacagcagctgtgtggcagcacctgtatgggagggcttgagtagaatgtc
aggccatacctcagatgcacatgagtttaa

gaattcatcggaaaacataaatactgggtcacatagatcaataaaatgga
aatactatattaattttaattttacttttcttgcgtccaagaggagacct
aaatccattaaatgaggtcgaatttgtaacaaagaaacttctgaaagtga
atgaatgaattacttattctttttggtcaaaaaggtcagaataaaattta
ggtcctgacagaaaacttattgcaagacaaacacaaaaaacttgagttta
tttcccaaatcccgcactaaaaaagctggtgtgctaaaactttttatatt
ctcagctctagttaggtagagacaggcatgtgaatctctgaggttcagtg
gtcactagtttagaatacttccaggaaagaaagagaaattgtctcaaaaa
tggagactgggagacaacatttaaataatgacacccaagtttgtcctttg
gcctccacaaaaaggaacagacacacaatttcacataagatatgtgtaaa
tacaaacacaaagaaattgcagaaacaatttgcaatgtagtttcaaatat
atctcaaattgtcaaattgtaattctgaatgcccatttataggtattcta
atgcatatttcaaaccccctagaagagttgatatgccttaaaggggaaga
tagaagggtaaggctttaaaggatacaaatccttacaaagttatgcacct
ttaaagaattaaagcttattagatactttagaaaacacagggagataatg
gtgactggaaatggctaggcaaaaatccaacccatgcccaaataactgat
atcacaaagaaatatgcacagaatttagaagtatatgcagtaattagatc
catctgctacccaatgcaggtactacaggaccctgattcaagactaaatt
agactcatttgttattaccagtacatatttgcattcaattaatgtgctaa
aatccttgaaaactatgctctcttagtgggttaaacatgtcattgtaatc
tgttatattaataattggctagcaaatctttttctttatattctagtaca
aagtaaactttatcaggcccagctagtatcataaattcatattagcgaaa
caacaatggactttgaatgacaggaaattgcctgccattgcttcattcat
ctactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_98428968_98430057
seq2: B6Ng01-317N01.b_47_1126 (reverse)

seq1  TTAAACTCATGTGCATCTGA-GTATTGCCTGGAACATTTCTACTTCAAGC  49
      |||||||||||||||||||| |||| |||||  ||| |||||| ||||||
seq2  TTAAACTCATGTGCATCTGAGGTATGGCCTG--ACA-TTCTAC-TCAAGC  46

seq1  CCTCCCAATTACAGGTGCTTGCCACCACAGCTGCTTGTTATGTGGTAAAT  99
      |||||||  ||||||||| ||||| ||||||||| |||||||||||||||
seq2  CCTCCCA--TACAGGTGC-TGCCA-CACAGCTGC-TGTTATGTGGTAAAT  91

seq1  AATGAATTTATTCAGTGCTTCACAGTTGTTCGCTTCTAGACATTCATCTC  149
      |||||| ||||||||||| |||||| ||||||||||||||||||||||||
seq2  AATGAA-TTATTCAGTGC-TCACAG-TGTTCGCTTCTAGACATTCATCTC  138

seq1  TCTTCCCCATAGCCATCTTTCTCAATACTAACAGCAAGAACTCTATACAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCCATAGCCATCTTTCTCAATACTAACAGCAAGAACTCTATACAT  188

seq1  GTTCTTGTGCTATGCTATGGATATGGAGGTCAGAGGACATACTAGTAGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGTGCTATGCTATGGATATGGAGGTCAGAGGACATACTAGTAGAC  238

seq1  ATTGGTTGTCTACGTCTG-CCTGTGTGTTCTACGGATGAAACTCAGGCTA  298
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTGGTTGTCTACGTCTGCCCTGTGTGTTCTACGGATGAAACTCAGGCTA  288

seq1  GCTGGTTGGCAGAATCATCTTTAGTCACTGAGGCAAGGAATGCACTACTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTGGCAGAATCATCTTTAGTCACTGAGGCAAGGAATGCACTACTT  338

seq1  TCTTATATGAATATTCCCTAAGGACAGAACTCTACATCACTCCAGAATTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATATGAATATTCCCTAAGGACAGAACTCTACATCACTCCAGAATTT  388

seq1  TTAAGTGGCATTTTATAAAGAACATTTTACTTCCTGAGTAAAATCAAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGGCATTTTATAAAGAACATTTTACTTCCTGAGTAAAATCAAAAA  438

seq1  GGTCAAAATTAATATTATATGTGTGTCTAACCCTTCGTAAATTTATTGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAATTAATATTATATGTGTGTCTAACCCTTCGTAAATTTATTGAG  488

seq1  ACATTATTGATGAAATTAACTGAGTAAATATTTTTTTTATCTGTACAATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTGATGAAATTAACTGAGTAAATATTTTTTTTATCTGTACAATG  538

seq1  ATGAAAATACACTTTAGTTAGTTTCTGTAGTTAAAATTTCAATAACGTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATACACTTTAGTTAGTTTCTGTAGTTAAAATTTCAATAACGTGT  588

seq1  TTATTTGCAAATATGCTGATTTGAAATATTCAAAACAGTAGCACATTATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGCAAATATGCTGATTTGAAATATTCAAAACAGTAGCACATTATT  638

seq1  TTCCAATTCATCTGCTTTTTTTTTTTTTTTTTTTTTTTAGTATTAGAATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTCATCTGCTTTTTTTTTTTTTTTTTTTTTTTAGTATTAGAATT  688

seq1  TTGAAAACATGTGCTGTGATTTCTTTGGAGCTCGTCCATTCTTGAATTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACATGTGCTGTGATTTCTTTGGAGCTCGTCCATTCTTGAATTCT  738

seq1  GGCAAAACACAAAAATGAAATTAATTTCCTCGAAGGTATGAATAGTATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAACACAAAAATGAAATTAATTTCCTCGAAGGTATGAATAGTATTT  788

seq1  TCTTCATTATTTCATCTGCTAAACACTTTCCAGGGAGCACCATTACTTGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTATTTCATCTGCTAAACACTTTCCAGGGAGCACCATTACTTGG  838

seq1  CTATGGTAATTTCCTTCAACTCCACAATATTATTCCAAGCAAAATGTGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTAATTTCCTTCAACTCCACAATATTATTCCAAGCAAAATGTGAA  888

seq1  TTTTTAACATACGTTCCCATTGCTGAATTACATTAAAGTACTTTCATTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACATACGTTCCCATTGCTGAATTACATTAAAGTACTTTCATTCT  938

seq1  GAGGCTTATGATAGGGCTCACTGGGTGCATGTTGTGCAACTATTAGGATC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTATGATAGGGCTCACTGGGTGCATGTTGTGCAACTATTAGGATC  988

seq1  TGCATTTAGAAGTCTATCACACATGGACCCATGGTATATCCATGAATTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTAGAAGTCTATCACACATGGACCCATGGTATATCCATGAATTTT  1038

seq1  ACTGAAACACCAGGGCTCTGGAAAGCAGAGATAGAAGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACACCAGGGCTCTGGAAAGCAGAGATAGAAGAATTC  1080


seq1: chr14_98253098_98254273
seq2: B6Ng01-317N01.g_65_1221

seq1  GAATTCATCGGAAAACATAAATACTGGGTCACATAGATCAATAAAATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCGGAAAACATAAATACTGGGTCACATAGATCAATAAAATGGA  50

seq1  AATACTATATTAATTTTAATTTTACTTTTCTTGCGTCCAAGAGGAGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTATATTAATTTTAATTTTACTTTTCTTGCGTCCAAGAGGAGACCT  100

seq1  AAATCCATTAAATGAGGTCGAATTTGTAACAAAGAAACTTCTGAAAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCATTAAATGAGGTCGAATTTGTAACAAAGAAACTTCTGAAAGTGA  150

seq1  ATGAATGAATTACTTATTCTTTTTGGTCAAAAAGGTCAGAATAAAATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGAATTACTTATTCTTTTTGGTCAAAAAGGTCAGAATAAAATTTA  200

seq1  GGTCCTGACAGAAAACTTATTGCAAGACAAACACAAAAAACTTGAGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGACAGAAAACTTATTGCAAGACAAACACAAAAAACTTGAGTTTA  250

seq1  TTTCCCAAATCCCGCACTAAAAAAGCTGGTGTGCTAAAACTTTTTATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAAATCCCGCACTAAAAAAGCTGGTGTGCTAAAACTTTTTATATT  300

seq1  CTCAGCTCTAGTTAGGTAGAGACAGGCATGTGAATCTCTGAGGTTCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTCTAGTTAGGTAGAGACAGGCATGTGAATCTCTGAGGTTCAGTG  350

seq1  GTCACTAGTTTAGAATACTTCCAGGAAAGAAAGAGAAATTGTCTCAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTAGTTTAGAATACTTCCAGGAAAGAAAGAGAAATTGTCTCAAAAA  400

seq1  TGGAGACTGGGAGACAACATTTAAATAATGACACCCAAGTTTGTCCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACTGGGAGACAACATTTAAATAATGACACCCAAGTTTGTCCTTTG  450

seq1  GCCTCCACAAAAAGGAACAGACACACAATTTCACATAAGATATGTGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCACAAAAAGGAACAGACACACAATTTCACATAAGATATGTGTAAA  500

seq1  TACAAACACAAAGAAATTGCAGAAACAATTTGCAATGTAGTTTCAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACACAAAGAAATTGCAGAAACAATTTGCAATGTAGTTTCAAATAT  550

seq1  ATCTCAAATTGTCAAATTGTAATTCTGAATGCCCATTTATAGGTATTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAATTGTCAAATTGTAATTCTGAATGCCCATTTATAGGTATTCTA  600

seq1  ATGCATATTTCAAACCCCCTAGAAGAGTTGATATGCCTTAAAGGGGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATTTCAAACCCCCTAGAAGAGTTGATATGCCTTAAAGGGGAAGA  650

seq1  TAGAAGGGTAAGGCTTTAAAGGATACAAATCCTTACAAAGTTATGCACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGGTAAGGCTTTAAAGGATACAAATCCTTACAAAGTTATGCACCT  700

seq1  TTAAAGAATTAAAGCTTATTAGATACTTTAGAAAACACAGGGAGATAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAATTAAAGCTTATTAGATACTTTAGAAAACACAGGGAGATAATG  750

seq1  GTGACTGGAAATGGCTAGGCAAAAATCCAACCCATGCCCAAATAACTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGGAAATGGCTAGGCAAAAATCCAACCCATGCCCAAATAACTGAT  800

seq1  ATCACAAAGAAATATGCACAGAATTTAGAAGTATATGCAGTAATTAGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAAGAAATATGCACAGAATTTAGAAGTATATGCAGTAATTAGATC  850

seq1  CATCTGCTACCCAATGCAGGTACTACAGGACCCTGATTCAAGACTAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTACCCAATGCAGGTACTACAGGACCCTGATTCAAGACTAAATT  900

seq1  AGACTCATTTGTTATTACCAGTACATATTTGCATTCAATTAATGTGCTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCATTTGTTATTACCAGTACATATTTGCATTCAATTAATGTGCTAA  950

seq1  AATCCTTGAAAACTATGCTCTCTTAAGTGGGTTAAACATGTTCATTGTAA  1000
      |||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  AATCCTTGAAAACTATGCTCTCTT-AGTGGGTTAAACATG-TCATTGTAA  998

seq1  TCTTGTTTATATTAATAATTGGCTTAGCAAATC-TTTTCTTTATA-TCTA  1048
      |||   ||||||||||||||||| ||||||||| ||||||||||| ||||
seq2  TCT--GTTATATTAATAATTGGC-TAGCAAATCTTTTTCTTTATATTCTA  1045

seq1  GTACAAAGGTAAACTTTATCAAGCCCAAGCTAAATTATCATAAATTCCAT  1098
      ||||||| ||||||||||||| |||| ||||  | ||||||||||| |||
seq2  GTACAAA-GTAAACTTTATCAGGCCC-AGCT--AGTATCATAAATT-CAT  1090

seq1  ATTAGCAGAAACCAAATTAATGAGCTTTGATTGTACCAAGAAAATTGCCT  1148
      |||||| |||||   |  ||||  |||||| || ||  || |||||||| 
seq2  ATTAGC-GAAAC---AACAATGGACTTTGAATG-AC--AGGAAATTGCC-  1132

seq1  TTGCCAATTGCTTCATTTCATCTACTGT  1176
       |||| ||||||||| ||||||||||||
seq2  -TGCC-ATTGCTTCA-TTCATCTACTGT  1157


| Home | SequenceCutter | Blast | Download |