BAC Information

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BAC

Clone NameB6Ng01-318A09
Chromosome14 (Build37)
Map Location 115,935,466 - 116,030,526
singlet/doubletdoublet
Overlap geneGpc5
Upstream geneLOC100043521
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318A09.bB6Ng01-318A09.g
ACCGA108016GA108017
length1,0861,026
definitionB6Ng01-318A09.b B6Ng01-318A09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,029,437 - 116,030,526)(115,935,466 - 115,936,497)
sequence
gaattcattgacaagacagtcttgcgaattagcttgagcttagaagtgct
gtcgcaaaattaatgttttactcatgtatatactatacacacaatgtcga
tacaacaattgattgttctgtgatttcactgtgatagatgatgttgcgaa
tgcataaagcatctttttttggagccttaggaccaatgtttctgagtaag
actatatatgtgtctacaaagccattttgtggagtaatgtccaggaaaac
aaagaaacagggccactgtggcatgtccctcttcagagtctgactaagct
tgctagagagattagaacaacagagatgtgaagtcacactacaacggaac
tatatgaaaacataagcctaggaacaggaagcagccaaacacaagagcag
aaaagtagacaagtatatttcatccaaaagtatagctatagtgaccgtca
atcacatcatataaagttttaaaacttgggaaattacattagaagaacac
actgccaaaggtcttattgactaaggcagtacatttcttgtatacatttg
aaggatttgtcagggatagaactccataagcctgagtgcacacactgcaa
agagacaatgtatatttttgttttcatctttttggaagtatctcctatga
attttcaggatgaaacgtttctaagttatcttaaagaagttataatatgt
gctttttttagtcactgcaagctgtgcttcccctgcagggattataacat
atgtagacatgaaatatatgacaaagtagcacaagaggctgcagggatag
caaagaaaagttacatagtgaaaagtttcttagagggtttgaaaagcagg
aaacctactgtttcatttgttttcttaattggatataataaatcacagtt
gtatcttaaaacaaaactgaccaccaaaattaacaatgaaatacgtataa
caaaaaagccattaagaagacaataaattgtatatttaccacaaaaagta
aaagcatgatagataaacataaattcatatacaaaatattaacttcaaat
ttagaaaaatatgagattcagatgtacatcttatta

gaattctgtttagatctgtactcttaattggattatttggttttttgaaa
tttcattttttgagttttttatttattttggatattggctcacatatcta
tttatatgtagttggtaaaaatattttcccattctctagacttctgcttt
gtctaattgacactgtcctttcccttactgaaaattttcagtttctttag
gttccatttattaattatttattttgggctctatttaaaaagttatctcc
tatgctagtgtattcatggctattccccactctcttgtctattgggtttt
gtgtatctggttttcagttgaagtctttgatatgcttcgactattttgaa
aaataattatcaataaaataactctctaataatatgatgctagactcata
gataagtttcttatttagttttcatcagagtggtttcctctggaagcaaa
tgggtaaaaatgcagagactcccagataggtactgtcatcagttacatgt
taggttgttggtagtttgatgtccttgatctgggttcatttttaaccttg
atttagttacacacagcctgaggtacatatttaagtactaaatgaccagt
gatggtttcatttaacccagagatggaagaccagagcttaaaagtgagtc
agacacagcttggacatcttctattttagcatgtaaaatctacctgttta
ttgaaaatttaaattctcaaccaaccacacagtattacaaactactaatt
ataccattgtatgtccaaaacagggcttatatggggctagcttctaagat
tctctatcttcctaccttaatatagcaagtagttttgtttgtaagtaata
tagtttaattctttgaagtcatataagttaccagattggaggtaatccat
ttatatactctgatcacttttgcttccttaagctttcttttcaccccatt
cccatcaacgttgttactcttcatcccttgtgtcctttccagatttatag
atatgtagttttttgtacccactaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_116029437_116030526
seq2: B6Ng01-318A09.b_43_1128 (reverse)

seq1  TAAT-AGATGTTACATCTGAAATCTCATATTTTTCTTAAATTTTGAGTTT  49
      |||| ||||| |||||||| ||||||||||||||||  || |||||  ||
seq2  TAATAAGATG-TACATCTG-AATCTCATATTTTTCT--AAATTTGAAGTT  46

seq1  ATTATTTTGTATATG-ATTTATGTTTATCTATCATTGCTTTTTACTTTTT  98
      | ||||||||||||| |||||||||||||||||| ||| |||||||||||
seq2  AATATTTTGTATATGAATTTATGTTTATCTATCA-TGC-TTTTACTTTTT  94

seq1  GTGGTAATTATTACAATTTATTGTCTTCTTAATGGCTTTTTTGTTATACG  148
      ||||||| || |||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAATA-TACAATTTATTGTCTTCTTAATGGCTTTTTTGTTATACG  143

seq1  TA-TTCATTGTTAATTTTGGTGGTCAGTTTTGTTTTAAGATACAACTGTG  197
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATTGTTAATTTTGGTGGTCAGTTTTGTTTTAAGATACAACTGTG  193

seq1  ATTTATTATATCCAATTAAGAAAACAAATGAAACAGTAGGTTTCCTGCTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTATATCCAATTAAGAAAACAAATGAAACAGTAGGTTTCCTGCTT  243

seq1  TTCAAACCCTCTAAGAAACTTTTCACTATGTAACTTTTCTTTGCTATCCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACCCTCTAAGAAACTTTTCACTATGTAACTTTTCTTTGCTATCCC  293

seq1  TGCAGCCTCTTGTGCTACTTTGTCATATATTTCATGTCTACATATGTTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCTCTTGTGCTACTTTGTCATATATTTCATGTCTACATATGTTAT  343

seq1  AATCCCTGCAGGGGAAGCACAGCTTGCAGTGACTAAAAAAAGCACATATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTGCAGGGGAAGCACAGCTTGCAGTGACTAAAAAAAGCACATATT  393

seq1  ATAACTTCTTTAAGATAACTTAGAAACGTTTCATCCTGAAAATTCATAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTCTTTAAGATAACTTAGAAACGTTTCATCCTGAAAATTCATAGG  443

seq1  AGATACTTCCAAAAAGATGAAAACAAAAATATACATTGTCTCTTTGCAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTTCCAAAAAGATGAAAACAAAAATATACATTGTCTCTTTGCAGT  493

seq1  GTGTGCACTCAGGCTTATGGAGTTCTATCCCTGACAAATCCTTCAAATGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACTCAGGCTTATGGAGTTCTATCCCTGACAAATCCTTCAAATGT  543

seq1  ATACAAGAAATGTACTGCCTTAGTCAATAAGACCTTTGGCAGTGTGTTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGAAATGTACTGCCTTAGTCAATAAGACCTTTGGCAGTGTGTTCT  593

seq1  TCTAATGTAATTTCCCAAGTTTTAAAACTTTATATGATGTGATTGACGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGTAATTTCCCAAGTTTTAAAACTTTATATGATGTGATTGACGGT  643

seq1  CACTATAGCTATACTTTTGGATGAAATATACTTGTCTACTTTTCTGCTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATAGCTATACTTTTGGATGAAATATACTTGTCTACTTTTCTGCTCT  693

seq1  TGTGTTTGGCTGCTTCCTGTTCCTAGGCTTATGTTTTCATATAGTTCCGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGGCTGCTTCCTGTTCCTAGGCTTATGTTTTCATATAGTTCCGT  743

seq1  TGTAGTGTGACTTCACATCTCTGTTGTTCTAATCTCTCTAGCAAGCTTAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGTGACTTCACATCTCTGTTGTTCTAATCTCTCTAGCAAGCTTAG  793

seq1  TCAGACTCTGAAGAGGGACATGCCACAGTGGCCCTGTTTCTTTGTTTTCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTCTGAAGAGGGACATGCCACAGTGGCCCTGTTTCTTTGTTTTCC  843

seq1  TGGACATTACTCCACAAAATGGCTTTGTAGACACATATATAGTCTTACTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATTACTCCACAAAATGGCTTTGTAGACACATATATAGTCTTACTC  893

seq1  AGAAACATTGGTCCTAAGGCTCCAAAAAAAGATGCTTTATGCATTCGCAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATTGGTCCTAAGGCTCCAAAAAAAGATGCTTTATGCATTCGCAA  943

seq1  CATCATCTATCACAGTGAAATCACAGAACAATCAATTGTTGTATCGACAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCTATCACAGTGAAATCACAGAACAATCAATTGTTGTATCGACAT  993

seq1  TGTGTGTATAGTATATACATGAGTAAAACATTAATTTTGCGACAGCACTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATAGTATATACATGAGTAAAACATTAATTTTGCGACAGCACTT  1043

seq1  CTAAGCTCAAGCTAATTCGCAAGACTGTCTTGTCAATGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTCAAGCTAATTCGCAAGACTGTCTTGTCAATGAATTC  1086


seq1: chr14_115935466_115936497
seq2: B6Ng01-318A09.g_67_1092

seq1  GAATTCTGTTTAGATCTGTACTCTTAATTGGATTATTTGGTTTTTTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTAGATCTGTACTCTTAATTGGATTATTTGGTTTTTTGAAA  50

seq1  TTTCATTTTTTGAGTTTTTTATTTATTTTGGATATTGGCTCACATATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTTTGAGTTTTTTATTTATTTTGGATATTGGCTCACATATCTA  100

seq1  TTTATATGTAGTTGGTAAAAATATTTTCCCATTCTCTAGACTTCTGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGTAGTTGGTAAAAATATTTTCCCATTCTCTAGACTTCTGCTTT  150

seq1  GTCTAATTGACACTGTCCTTTCCCTTACTGAAAATTTTCAGTTTCTTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATTGACACTGTCCTTTCCCTTACTGAAAATTTTCAGTTTCTTTAG  200

seq1  GTTCCATTTATTAATTATTTATTTTGGGCTCTATTTAAAAAGTTATCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATTTATTAATTATTTATTTTGGGCTCTATTTAAAAAGTTATCTCC  250

seq1  TATGCTAGTGTATTCATGGCTATTCCCCACTCTCTTGTCTATTGGGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTAGTGTATTCATGGCTATTCCCCACTCTCTTGTCTATTGGGTTTT  300

seq1  GTGTATCTGGTTTTCAGTTGAAGTCTTTGATATGCTTCGACTATTTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCTGGTTTTCAGTTGAAGTCTTTGATATGCTTCGACTATTTTGAA  350

seq1  AAATAATTATCAATAAAATAACTCTCTAATAATATGATGCTAGACTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTATCAATAAAATAACTCTCTAATAATATGATGCTAGACTCATA  400

seq1  GATAAGTTTCTTATTTAGTTTTCATCAGAGTGGTTTCCTCTGGAAGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTTTCTTATTTAGTTTTCATCAGAGTGGTTTCCTCTGGAAGCAAA  450

seq1  TGGGTAAAAATGCAGAGACTCCCAGATAGGTACTGTCATCAGTTACATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAAAATGCAGAGACTCCCAGATAGGTACTGTCATCAGTTACATGT  500

seq1  TAGGTTGTTGGTAGTTTGATGTCCTTGATCTGGGTTCATTTTTAACCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGTTGGTAGTTTGATGTCCTTGATCTGGGTTCATTTTTAACCTTG  550

seq1  ATTTAGTTACACACAGCCTGAGGTACATATTTAAGTACTAAATGACCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTACACACAGCCTGAGGTACATATTTAAGTACTAAATGACCAGT  600

seq1  GATGGTTTCATTTAACCCAGAGATGGAAGACCAGAGCTTAAAAGTGAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTCATTTAACCCAGAGATGGAAGACCAGAGCTTAAAAGTGAGTC  650

seq1  AGACACAGCTTGGACATCTTCTATTTTAGCATGTAAAATCTACCTGTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGCTTGGACATCTTCTATTTTAGCATGTAAAATCTACCTGTTTA  700

seq1  TTGAAAATTTAAATTCTCAACCAACCACACAGTATTACAAACTACTAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATTTAAATTCTCAACCAACCACACAGTATTACAAACTACTAATT  750

seq1  ATACCATTGTATGTCCAAAACAGGGCTTATATGGGGCTAGCTTCTAAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATTGTATGTCCAAAACAGGGCTTATATGGGGCTAGCTTCTAAGAT  800

seq1  TCTCTATCTTCCTACCTTAATATAGCAAGTAGTTTTGTTTGTAAGTAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATCTTCCTACCTTAATATAGCAAGTAGTTTTGTTTGTAAGTAATA  850

seq1  TAGTTTAATTCTTTGAAGTCATATAAGTTACCAGATTGGAGGTAATCCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAATTCTTTGAAGTCATATAAGTTACCAGATTGGAGGTAATCCAT  900

seq1  TTATATACTCTGATCACTTTTGCTTCCTTAAGCTTTCTTTTCACCCCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATACTCTGATCACTTTTGCTTCCTTAAGCTTTCTTTTCACCCCATT  950

seq1  CCCATCAACGTTGTTACTCTTCCATCCCTTGTTGTCCTTTCCCAAGATTT  1000
      ||||||||||||||||||||| ||||||||| ||||||||||  ||||||
seq2  CCCATCAACGTTGTTACTCTT-CATCCCTTG-TGTCCTTTCC--AGATTT  996

seq1  ATAGATTATGGTAGTTTTTGTAACCCACTAAG  1032
      ||||| ||| |||||||||   ||||||||||
seq2  ATAGA-TAT-GTAGTTTTTTGTACCCACTAAG  1026


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