BAC Information

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BAC

Clone NameB6Ng01-318G03
Chromosome14 (Build37)
Map Location 118,149,543 - 118,272,368
singlet/doubletdoublet
Overlap geneGpc6
Upstream genenone
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4, Cldn10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318G03.bB6Ng01-318G03.g
ACCGA108288GA108289
length1,0571,126
definitionB6Ng01-318G03.b B6Ng01-318G03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,271,325 - 118,272,368)(118,149,543 - 118,150,671)
sequence
gaattcttactttactttccaaaaagttgtatttaccgtaaaagaggacg
ctttaggaaatatactctttgtattgtttgtttttgtttttgtttttctt
tttttttctggggggcggtgatgcatggacaaggtgtcatatctggcctg
gaagtcactctgtagaccaggccggcttcagacttcctgagatcttcctg
cctctgcctctcaagtgtggagaccaaaggcaatgtgctgctatcatgcc
caacttagtttggttaatgtggtggtttaaatgagagtgatttgcatagg
ctcaggtatttgaatgcttggtccttagtttgtgagaatgcctgggaagg
agcaggacgggtggctttgctggaggaggtgcactgtgtcctggcctggg
aaggagcgggacgggtggctttgctggaggaggtgcactgtgtcctggcc
tgggttttgggttcataggaaacagaagctccccttgtcccacacgatga
cgtcaggagaagtctgttatggagcaagtgtcacaggggtgcttatttct
agcatgcagtagatgctgtggtgagctgtcaggatggggactcacaacag
ggatctactgaaaggggacaggaggtgggggggaacgtcataggtagagg
aagtcacggaagctgaggaaaaaaccatggagctgtggacatcagccaag
gcacagaggcctcaggtaggcagaggcaggagacaagaccgtgtgagctt
tgggttctgctctaggtgaaaaggagttggtaaagggtgaacaccttgat
cttgttagtgtttccagatcccttgattactaaataaagggacagattta
aagggacttaagaaagaaagccaaagggaccagttaggaagtagtgacag
taaaggtgctgtccatagagaaactttgtttcaaggattccttgaaactc
aagtttgtagaaaccgtcgtatctaagtatggtccagtcactggagaaca
atggaaaactctcatccccatcttgtaacaggcttggtaagcagaattgt
tttattt
gaattcaggagtttcgattaaatttttcttttactgtatctattattccc
ccttttttttcttctacatttgtagtaaggacttgaagctgtggttttag
tctgttcagaaaatattgcacttttctttatgtgagaacacagccatgaa
tgataaagtgaacagaggggacaaaggtcaaagtcactcagcaagctatt
cctttcagctctggttttgtttcagagcagaaataatccatcgtgaagaa
tatttctgagaaggatttcacaacctttcctttgatttgccaatctaaaa
ttagtttcagggaaccagaatcatgaaagtatttttctcacatattcatg
acttaacccaataaaacttagtgctcatgggaagtgttctttttttttgt
gcttgccttttacgggatgttaagattttataatatgtaactcatcagtc
acacaaagctaagcggaatggcctgaagacacggctcagctgttaagcac
ccaaactgctcctgtggagaacctgtgtgcagttcctagcacccacaaac
agctgacagccacctaaaattccaatttctagggaatccagtgccctctg
ctggcctctgctggtacctgcaaactgttgatgcacatacacactaaata
aataagtagatctttgggaaaaaaacaaactaaatgaaagaacacacaat
gagctccggtttcctgatgaaatgctacctcttgtttcatctcttcactc
ctccatccttctgcctcttctgttgggctcttcaggattgtctttagcaa
tctcaaacagtatatcaccttttccttaaatgctgatcaatatagctgta
ggagacttgttctttctttaaagttaccgaataccatcattatatctaaa
agaaagtttgtttattcatacccttggattcaacctaatttagcagacac
gttctaatgtttttttttttccctttcagtttctggaggaaatgcagttt
atttatgccatgaagtttatagaaagatgatgactaaaatattatcaact
gtactgagagaactaaggagcaatcaagtctattataggctgtactacac
atccgattggccattaagaccaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_118271325_118272368
seq2: B6Ng01-318G03.b_45_1101 (reverse)

seq1  AAAT-AAACAA-TCTGC-TACC-AGCCTGTTAC-AGAT-GGGATGAGAGT  44
      |||| |||||| ||||| |||| |||||||||| |||| |||||||||||
seq2  AAATAAAACAATTCTGCTTACCAAGCCTGTTACAAGATGGGGATGAGAGT  50

seq1  TTTCC-TTGTTCTCCAGTGACTGGA-CATACTTAGATACGAC-GTTTCTA  91
      ||||| ||||||||||||||||||| |||||||||||||||| |||||||
seq2  TTTCCATTGTTCTCCAGTGACTGGACCATACTTAGATACGACGGTTTCTA  100

seq1  C-AACTTGAGTTTTCAGGAATCCTTGAAACAAAGTTTCTCTATGGACAGC  140
      | |||||||||||  |||||||||||||||||||||||||||||||||||
seq2  CAAACTTGAGTTTCAAGGAATCCTTGAAACAAAGTTTCTCTATGGACAGC  150

seq1  ACC-TTACTGTCACTACTTCCTAACTGGTCCC-TTGGCTTTCTTTCTTAA  188
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACCTTTACTGTCACTACTTCCTAACTGGTCCCTTTGGCTTTCTTTCTTAA  200

seq1  GTCCCTTTAAATCTGT-CCTTTATTTAGTAATCAAGGGATCTGGAAACAC  237
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTCCCTTTAAATCTGTCCCTTTATTTAGTAATCAAGGGATCTGGAAACAC  250

seq1  TAACAAGATCAAGGTGTTCACCCTTTACCAACTCCTTTTCACCTAGAGCA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGATCAAGGTGTTCACCCTTTACCAACTCCTTTTCACCTAGAGCA  300

seq1  GAACCCAAAGCTCACACGGTCTTGTCTCCTGCCTCTGCCTACCTGAGGCC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAAAGCTCACACGGTCTTGTCTCCTGCCTCTGCCTACCTGAGGCC  350

seq1  TCTGTGCCTTGGCTGATGTCCACAGCTCCATGGTTTTTTCCTCAGCTTCC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCCTTGGCTGATGTCCACAGCTCCATGGTTTTTTCCTCAGCTTCC  400

seq1  GTGACTTCCTCTACCTATGACGTTCCCCCCCACCTCCTGTCCCCTTTCAG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTCCTCTACCTATGACGTTCCCCCCCACCTCCTGTCCCCTTTCAG  450

seq1  TAGATCCCTGTTGTGAGTCCCCATCCTGACAGCTCACCACAGCATCTACT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCCTGTTGTGAGTCCCCATCCTGACAGCTCACCACAGCATCTACT  500

seq1  GCATGCTAGAAATAAGCACCCCTGTGACACTTGCTCCATAACAGACTTCT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTAGAAATAAGCACCCCTGTGACACTTGCTCCATAACAGACTTCT  550

seq1  CCTGACGTCATCGTGTGGGACAAGGGGAGCTTCTGTTTCCTATGAACCCA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACGTCATCGTGTGGGACAAGGGGAGCTTCTGTTTCCTATGAACCCA  600

seq1  AAACCCAGGCCAGGACACAGTGCACCTCCTCCAGCAAAGCCACCCGTCCC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGGCCAGGACACAGTGCACCTCCTCCAGCAAAGCCACCCGTCCC  650

seq1  GCTCCTTCCCAGGCCAGGACACAGTGCACCTCCTCCAGCAAAGCCACCCG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTCCCAGGCCAGGACACAGTGCACCTCCTCCAGCAAAGCCACCCG  700

seq1  TCCTGCTCCTTCCCAGGCATTCTCACAAACTAAGGACCAAGCATTCAAAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCCTTCCCAGGCATTCTCACAAACTAAGGACCAAGCATTCAAAT  750

seq1  ACCTGAGCCTATGCAAATCACTCTCATTTAAACCACCACATTAACCAAAC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGCCTATGCAAATCACTCTCATTTAAACCACCACATTAACCAAAC  800

seq1  TAAGTTGGGCATGATAGCAGCACATTGCCTTTGGTCTCCACACTTGAGAG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGGGCATGATAGCAGCACATTGCCTTTGGTCTCCACACTTGAGAG  850

seq1  GCAGAGGCAGGAAGATCTCAGGAAGTCTGAAGCCGGCCTGGTCTACAGAG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGGAAGATCTCAGGAAGTCTGAAGCCGGCCTGGTCTACAGAG  900

seq1  TGACTTCCAGGCCAGATATGACACCTTGTCCATGCATCACCGCCCCCCAG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCCAGGCCAGATATGACACCTTGTCCATGCATCACCGCCCCCCAG  950

seq1  AAAAAAAAAGAAAAACAAAAACAAAAACAAACAATACAAAGAGTATATTT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGAAAAACAAAAACAAAAACAAACAATACAAAGAGTATATTT  1000

seq1  CCTAAAGCGTCCTCTTTTACGGTAAATACAACTTTTTGGAAAGTAAAGTA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGCGTCCTCTTTTACGGTAAATACAACTTTTTGGAAAGTAAAGTA  1050

seq1  AGAATTC  1044
      |||||||
seq2  AGAATTC  1057

seq1: chr14_118149543_118150671
seq2: B6Ng01-318G03.g_66_1191

seq1  GAATTCAGGAGTTTCGATTAAATTTTTCTTTTACTGTATCTATTATTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGTTTCGATTAAATTTTTCTTTTACTGTATCTATTATTCCC  50

seq1  CCTTTTTTTTCTTCTACATTTGTAGTAAGGACTTGAAGCTGTGGTTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTTTCTTCTACATTTGTAGTAAGGACTTGAAGCTGTGGTTTTAG  100

seq1  TCTGTTCAGAAAATATTGCACTTTTCTTTATGTGAGAACACAGCCATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCAGAAAATATTGCACTTTTCTTTATGTGAGAACACAGCCATGAA  150

seq1  TGATAAAGTGAACAGAGGGGACAAAGGTCAAAGTCACTCAGCAAGCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAGTGAACAGAGGGGACAAAGGTCAAAGTCACTCAGCAAGCTATT  200

seq1  CCTTTCAGCTCTGGTTTTGTTTCAGAGCAGAAATAATCCATCGTGAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAGCTCTGGTTTTGTTTCAGAGCAGAAATAATCCATCGTGAAGAA  250

seq1  TATTTCTGAGAAGGATTTCACAACCTTTCCTTTGATTTGCCAATCTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGAGAAGGATTTCACAACCTTTCCTTTGATTTGCCAATCTAAAA  300

seq1  TTAGTTTCAGGGAACCAGAATCATGAAAGTATTTTTCTCACATATTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTCAGGGAACCAGAATCATGAAAGTATTTTTCTCACATATTCATG  350

seq1  ACTTAACCCAATAAAACTTAGTGCTCATGGGAAGTGTTCTTTTTTTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACCCAATAAAACTTAGTGCTCATGGGAAGTGTTCTTTTTTTTTGT  400

seq1  GCTTGCCTTTTACGGGATGTTAAGATTTTATAATATGTAACTCATCAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCTTTTACGGGATGTTAAGATTTTATAATATGTAACTCATCAGTC  450

seq1  ACACAAAGCTAAGCGGAATGGCCTGAAGACACGGCTCAGCTGTTAAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGCTAAGCGGAATGGCCTGAAGACACGGCTCAGCTGTTAAGCAC  500

seq1  CCAAACTGCTCCTGTGGAGAACCTGTGTGCAGTTCCTAGCACCCACAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTGCTCCTGTGGAGAACCTGTGTGCAGTTCCTAGCACCCACAAAC  550

seq1  AGCTGACAGCCACCTAAAATTCCAATTTCTAGGGAATCCAGTGCCCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACAGCCACCTAAAATTCCAATTTCTAGGGAATCCAGTGCCCTCTG  600

seq1  CTGGCCTCTGCTGGTACCTGCAAACTGTTGATGCACATACACACTAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCTGCTGGTACCTGCAAACTGTTGATGCACATACACACTAAATA  650

seq1  AATAAGTAGATCTTTGGGAAAAAAACAAACTAAATGAAAGAACACACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTAGATCTTTGGGAAAAAAACAAACTAAATGAAAGAACACACAAT  700

seq1  GAGCTCCGGTTTCCTGATGAAATGCTACCTCTTGTTTCATCTCTTCACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCGGTTTCCTGATGAAATGCTACCTCTTGTTTCATCTCTTCACTC  750

seq1  CTCCATCCTTCTGCCTCTTCTGTTGGGCTCTTCAGGATTGTCTTTAGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCCTTCTGCCTCTTCTGTTGGGCTCTTCAGGATTGTCTTTAGCAA  800

seq1  TCTCAAACAGTATATCACCTTTTCCTTAAATGCTGATCAATATAGCTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAACAGTATATCACCTTTTCCTTAAATGCTGATCAATATAGCTGTA  850

seq1  GGAGACTTGTTCTTTCTTTAAAGTTACCGAAATACCATCATTATATCTAA  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGAGACTTGTTCTTTCTTTAAAGTTACCG-AATACCATCATTATATCTAA  899

seq1  AAGAAAGTTTGTTTATTCATA-CCTTGGATTCAACCTAA-TTAGCAGACA  948
      ||||||||||||||||||||| ||||||||||||||||| ||||||||| 
seq2  AAGAAAGTTTGTTTATTCATACCCTTGGATTCAACCTAATTTAGCAGAC-  948

seq1  ACGTTCTAATGTTTTTTTTTT--CCTTTCAGTTTTCCTGGAGGAAATGCA  996
      |||||||||||||||||||||  |||||||||||  ||||||||||||||
seq2  ACGTTCTAATGTTTTTTTTTTTCCCTTTCAGTTT--CTGGAGGAAATGCA  996

seq1  GGTTTATTATGCCATG-AGTTTATTAGAAAAGGATGATGACTAAAATA-T  1044
      | ||  |||||||||| |||||| ||||||  |||||||||||||||| |
seq2  GTTTATTTATGCCATGAAGTTTA-TAGAAA--GATGATGACTAAAATATT  1043

seq1  ATCAACTGTACTGAGAGAACTAAAGAAGCCATCAGGTCTAATTATAAGGC  1094
      ||||||||||||||||||||| ||| ||| |||| |||| ||||| ||||
seq2  ATCAACTGTACTGAGAGAACT-AAGGAGCAATCAAGTCT-ATTAT-AGGC  1090

seq1  TGTACTTACACATTCCAT--GGCATATAGACCAGGCT  1129
      ||||| ||||||| | ||  | |||  ||||||||||
seq2  TGTAC-TACACATCCGATTGGCCATTAAGACCAGGCT  1126