BAC Information

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BAC

Clone NameB6Ng01-318J21
Chromosome14 (Build37)
Map Location 110,732,425 - 110,777,183
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC640892
Downstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318J21.bB6Ng01-318J21.g
ACCGA108459GA108460
length1,062759
definitionB6Ng01-318J21.b B6Ng01-318J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,732,425 - 110,733,457)(110,776,423 - 110,777,183)
sequence
gaattcaaagggcaacttatgaacttgtagttggttctctccttccacct
atacatcactctggggggctaaacactgaccaccaggcctgtaaagcaag
cttctttttctgttgagccatttagacagccttcatctgtcctttttacc
ttttcaaattacattcacttacttagtgggggcatgagtgcatctgtgta
gaggtcagagatcaaattgcagacaacaattctcttcttccatccagtcg
ttccaattgattgaactcaggcttgtaggcttgacgacagacacctttat
aagcgtagccttcttggcagccaagtcatttttatcttaactgtgtaccc
cagctctactgtagatatgctgaatatatatactctgaagcagggttggg
taactaactgcatttgaagggctcctgtaaaaaagaatccatctctccat
caaagtgtcaccaaatattgtacactctacactgagaggtacaactttgg
aggaggttcctgctgaagtcaattgtccaactctttgcaacattagacgc
catctgtgtggccttaattcctcactattcaaatcaaataatttaaacca
catgaaccatttgcgtttctttgaagggattattgtggatggaggtagag
gtgatagatgctaagtatgtgctagtcccttaaatatgttaactttataa
ttacttctagcataaattcttagatttcttagccatttatatatacacat
attgctaagacttcgtgtatttgtttgctaaagaattctttagcaatttt
acattgggattaagagaaagggaacattttcaaatgctatcctgatcttt
cacagtaacaacattggtcacaaattgagcaccatacatggtcagttgct
tgcatacagtgtcccaaataatgtaagaggcatgtaagaagaggttgtga
tcttctgcttttcatatgccagggtaacttcccagcctagagagaattgg
gtgacattggcttgggggccctcccagctttgtgagtggtagagactaaa
ataatacgaaca

gaattcaaacctttttataaaggaactgaacctgctgttcttcaaaatta
cactgcaatcatgtttctcttaattaaactctcaaatcttcattaggaca
attggaaagagaacttaaatcagctaattctggatcagaattaatggaat
tatttttcctcctcatagtgtttggggctacaacctgaattgcatcttaa
ttcctttgggcagttgatctggggatttttccaggaaaactgtcttccat
ggaagaagatcgtttttcaagcaggggagatgtaaatgcaaatcatcatt
ctgaaaggattactcagagctccaagcatagatgtggtacacatttaaca
tgttttcttcttcaaaccaatcttctacctccatgtgggtgggctaggga
accaatctaaaacctgaaattgtttggctatcagatattattgtcagaga
tgctgtctacatgcagccagaacttccagatgcaaatggtaagaaacagc
caccatctaaacattttggtttcccaaggccaagtattgctgggaattgg
tctcatagttgcatttaatttgtattttaggttatgcagatacactttct
actgtacctttctgacaaaattcccaaacctatgtagtagatggcatagt
ttttactcaataactatgttgtggtgtgtgtgtttgtgtatgtgtgtgtg
tgtgtgtgtgtatggatgtgtgtttgtgtttagtgtttgtgtttgttgtg
tgtgtgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_110732425_110733457
seq2: B6Ng01-318J21.b_47_1108

seq1  GAATTCAAAGGGCAACTTATGAACTTGTAGTTGGTTCTCTCCTTCCACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGGCAACTTATGAACTTGTAGTTGGTTCTCTCCTTCCACCT  50

seq1  ATACATCACTCTGGGGGGCTAAACACTGACCACCAGGCCTGTAAAGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCACTCTGGGGGGCTAAACACTGACCACCAGGCCTGTAAAGCAAG  100

seq1  CTTCTTTTTCTGTTGAGCCATTTAGACAGCCTTCATCTGTCCTTTTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTTCTGTTGAGCCATTTAGACAGCCTTCATCTGTCCTTTTTACC  150

seq1  TTTTCAAATTACATTCACTTACTTAGTGGGGGCATGAGTGCATCTGTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAATTACATTCACTTACTTAGTGGGGGCATGAGTGCATCTGTGTA  200

seq1  GAGGTCAGAGATCAAATTGCAGACAACAATTCTCTTCTTCCATCCAGTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAGAGATCAAATTGCAGACAACAATTCTCTTCTTCCATCCAGTCG  250

seq1  TTCCAATTGATTGAACTCAGGCTTGTAGGCTTGACGACAGACACCTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTGATTGAACTCAGGCTTGTAGGCTTGACGACAGACACCTTTAT  300

seq1  AAGCGTAGCCTTCTTGGCAGCCAAGTCATTTTTATCTTAACTGTGTACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTAGCCTTCTTGGCAGCCAAGTCATTTTTATCTTAACTGTGTACCC  350

seq1  CAGCTCTACTGTAGATATGCTGAATATATATACTCTGAAGCAGGGTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTACTGTAGATATGCTGAATATATATACTCTGAAGCAGGGTTGGG  400

seq1  TAACTAACTGCATTTGAAGGGCTCCTGTAAAAAAGAATCCATCTCTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAACTGCATTTGAAGGGCTCCTGTAAAAAAGAATCCATCTCTCCAT  450

seq1  CAAAGTGTCACCAAATATTGTACACTCTACACTGAGAGGTACAACTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGTCACCAAATATTGTACACTCTACACTGAGAGGTACAACTTTGG  500

seq1  AGGAGGTTCCTGCTGAAGTCAATTGTCCAACTCTTTGCAACATTAGACGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTTCCTGCTGAAGTCAATTGTCCAACTCTTTGCAACATTAGACGC  550

seq1  CATCTGTGTGGCCTTAATTCCTCACTATTCAAATCAAATAATTTAAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGTGGCCTTAATTCCTCACTATTCAAATCAAATAATTTAAACCA  600

seq1  CATGAACCATTTGCGTTTCTTTGAAGGGATTATTGTGGATGGAGGTAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACCATTTGCGTTTCTTTGAAGGGATTATTGTGGATGGAGGTAGAG  650

seq1  GTGATAGATGCTAAGTATGTGCTAGTCCCTTAAATATGTTAACTTTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGATGCTAAGTATGTGCTAGTCCCTTAAATATGTTAACTTTATAA  700

seq1  TTACTTCTAGCATAAATTCTTAGA-TTCTTAGCCATTTATATATACACAT  749
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTACTTCTAGCATAAATTCTTAGATTTCTTAGCCATTTATATATACACAT  750

seq1  ATTGCTAAGACTTCGTGTATT--GTTGCT-AAGAATTC-TTAGCAA-TTT  794
      |||||||||||||||||||||   ||||| |||||||| ||||||| |||
seq2  ATTGCTAAGACTTCGTGTATTTGTTTGCTAAAGAATTCTTTAGCAATTTT  800

seq1  ACATT-GGATTAAGA-AAAGGGAACATTT--CAATGCTAT-CTGATC-TT  838
      ||||| ||||||||| |||||||||||||   |||||||| |||||| ||
seq2  ACATTGGGATTAAGAGAAAGGGAACATTTTCAAATGCTATCCTGATCTTT  850

seq1  CACAGTAACAACATTGGCCACAAATTGAGCAACATACAT-GTCAGTTGCT  887
      ||||||||||||||||| ||||||||||||| ||||||| ||||||||||
seq2  CACAGTAACAACATTGGTCACAAATTGAGCACCATACATGGTCAGTTGCT  900

seq1  TGCATACAGTGTCCCAAAT-ATGT-AGA-GCATGTAAGAAG-GGTTGTGA  933
      ||||||||||||||||||| |||| ||| |||||||||||| ||||||||
seq2  TGCATACAGTGTCCCAAATAATGTAAGAGGCATGTAAGAAGAGGTTGTGA  950

seq1  -CCTCTGCTTT--CTATG-CAGGGTAACT--CCAGCTTAGAGAG-ATTGG  976
       | ||||||||   |||| ||||||||||  ||||| ||||||| |||||
seq2  TCTTCTGCTTTTCATATGCCAGGGTAACTTCCCAGCCTAGAGAGAATTGG  1000

seq1  GTGAC-TTGCCT---GGGGCCTCCCAGC-TTGTGAGTGGTAGAGACTAAA  1021
      ||||| ||| ||   ||| ||||||||| |||||||||||||||||||||
seq2  GTGACATTGGCTTGGGGGCCCTCCCAGCTTTGTGAGTGGTAGAGACTAAA  1050

seq1  ATAATAAGAACA  1033
      |||||| |||||
seq2  ATAATACGAACA  1062


seq1: chr14_110776423_110777183
seq2: B6Ng01-318J21.g_65_823 (reverse)

seq1  TCTCTCACACACAC-ACAAACACATACACACAAACACACACACACATACA  49
        |||||||||||| ||||||||| ||||  ||||||| |||||||| ||
seq2  --TCTCACACACACAACAAACACAAACAC-TAAACACAAACACACATCCA  47

seq1  TACACACACACACACACACACATACACAAACACACACACCACAACATAGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACACACACACACATACACAAACACACACACCACAACATAGT  97

seq1  TATTGAGTAAAAACTATGCCATCTACTACATAGGTTTGGGAATTTTGTCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGTAAAAACTATGCCATCTACTACATAGGTTTGGGAATTTTGTCA  147

seq1  GAAAGGTACAGTAGAAAGTGTATCTGCATAACCTAAAATACAAATTAAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTACAGTAGAAAGTGTATCTGCATAACCTAAAATACAAATTAAAT  197

seq1  GCAACTATGAGACCAATTCCCAGCAATACTTGGCCTTGGGAAACCAAAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTATGAGACCAATTCCCAGCAATACTTGGCCTTGGGAAACCAAAAT  247

seq1  GTTTAGATGGTGGCTGTTTCTTACCATTTGCATCTGGAAGTTCTGGCTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGATGGTGGCTGTTTCTTACCATTTGCATCTGGAAGTTCTGGCTGC  297

seq1  ATGTAGACAGCATCTCTGACAATAATATCTGATAGCCAAACAATTTCAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGACAGCATCTCTGACAATAATATCTGATAGCCAAACAATTTCAGG  347

seq1  TTTTAGATTGGTTCCCTAGCCCACCCACATGGAGGTAGAAGATTGGTTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGATTGGTTCCCTAGCCCACCCACATGGAGGTAGAAGATTGGTTTG  397

seq1  AAGAAGAAAACATGTTAAATGTGTACCACATCTATGCTTGGAGCTCTGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAACATGTTAAATGTGTACCACATCTATGCTTGGAGCTCTGAG  447

seq1  TAATCCTTTCAGAATGATGATTTGCATTTACATCTCCCCTGCTTGAAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTTTCAGAATGATGATTTGCATTTACATCTCCCCTGCTTGAAAAA  497

seq1  CGATCTTCTTCCATGGAAGACAGTTTTCCTGGAAAAATCCCCAGATCAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTTCTTCCATGGAAGACAGTTTTCCTGGAAAAATCCCCAGATCAAC  547

seq1  TGCCCAAAGGAATTAAGATGCAATTCAGGTTGTAGCCCCAAACACTATGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAAGGAATTAAGATGCAATTCAGGTTGTAGCCCCAAACACTATGA  597

seq1  GGAGGAAAAATAATTCCATTAATTCTGATCCAGAATTAGCTGATTTAAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAAAATAATTCCATTAATTCTGATCCAGAATTAGCTGATTTAAGT  647

seq1  TCTCTTTCCAATTGTCCTAATGAAGATTTGAGAGTTTAATTAAGAGAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCCAATTGTCCTAATGAAGATTTGAGAGTTTAATTAAGAGAAAC  697

seq1  ATGATTGCAGTGTAATTTTGAAGAACAGCAGGTTCAGTTCCTTTATAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGCAGTGTAATTTTGAAGAACAGCAGGTTCAGTTCCTTTATAAAA  747

seq1  AGGTTTGAATTC  761
      ||||||||||||
seq2  AGGTTTGAATTC  759


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