BAC Information

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BAC

Clone NameB6Ng01-320A24
Chromosome14 (Build37)
Map Location 27,214,798 - 27,352,320
singlet/doubletdoublet
Overlap gene4933413J09Rik, Slmap, LOC100039353
Upstream geneZmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538
Downstream geneLOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320A24.bB6Ng01-320A24.g
ACCGA109532GA109533
length1,119937
definitionB6Ng01-320A24.b B6Ng01-320A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,351,194 - 27,352,320)(27,214,798 - 27,215,715)
sequence
gaattcaactcaggaccttgtctggtaggataactggagtgcaaagttac
tgtttgtaacgattgatacttacttgccccgatgaaataatttgtaaata
ttaaaggcaatttaattaagctagagtaagtaactacatctttggagttc
tgtttgcaagttggatcaacagaaatctattgctcttgaaagtcacttct
caatttctttggtagataatgtgtaattatatgatgatatgcaaaaatta
gtattaataagttagcttatttttagattatatccaatattgtctaatac
acacacacacacacacacacacacacacacacacacatatattttaaaga
cagggaccaactggcctggaactcactctgtagatcaggctggcctcaaa
ctcagagatttccctgcctctgcctcccaagtgctggaattaaagctcac
catgctgggccttgcttttaatttttaatccaatttaccttgtttatctt
ggcactgtactttgctagttacttattttaaaataaaaaggatcttttta
gtttttcaagaatttgcacgaatggagaatattttaaagaactcttcttt
gggcctaaacctaaggctttcgttgaactactgaaataattccaactcaa
actaagttacataagactaataggactgtctccagttttgtctcttgact
tttcgccccctctttctgagtgacatgagtaagtcttttttttttttttt
tttaagagaaagaatttgtcttcaagagtggtgttttgaaatgaaagaaa
cttgagcctttagaggaagaaagtaatgctagggcagctactgaattaag
gaattactaagtaaatgctatctaaaaaaaaaaaaaaaggaaggaaagat
ccccaagtgctgtgtgcttgcatagtggttataacctattctgtgtgtag
gatgaaaactgaaaaagttgtgtaacttttttctgagttacaccagagct
cttaacccataagaagagaacactttctctcctgaaagctaacattgatg
attcgtgatgacctgtgaattctttgtaatgactctgaagttcgtattgg
aatccagtatagttgctgc
gaattcctgatgccctgacctgcacatactctttttctgatgtttaaatg
aaccaatcgtgtgaaaccgcaccaattcctcccccagccccagatccttt
tctataaaaccccctagcttttgagccttgtggtcgacaacctctgtctc
ctgtgtgagatacgtgttagcccggagcgccgtcattaaactacctcttg
tgtttgcatcaagacggtctctcgtgattccttgggtgtgcgccgattag
ggaattgagtggggggttttcccactaggttctttcaatcccatgcaggg
atctgagctgtaggaataatccgagccttcactgtagtcctgtgtaggtt
ctctagaggcctgcagagaggaccccttcccgggttgtccacattcacct
ggcatctaatcaaggccttgcctatctcttctgaactatgactcatgata
cctatgctgctatttttcaaaaataaggtttctacatatcagacgaatgc
tctatttttttagtccagcatgatgggtatgtctcagttcaaatgttttt
aaggctgaggaaaaaaatctctgcccaggtcttctgatccttctcccctg
gggatgcccagaatgacctctgaaagatcatggtgcatttttccagttga
gtagaggtggtggaggctcaacagccgacatggcaggtccccaaaggcct
gtgtcccagctaccttcctccctctaggtgtgaaaaagtccagcatgaaa
ctcagacaggccacagaccatgatccagagccctccctgtagatcaagct
gctgcaaaaggagcaaatggagccttgccttggtaaagttgagccaccca
ttgagccttttctttagccattcagcattccattggggtggggtttttgt
ccttgtcccttggttccctttggggaaatgggcaccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_27351194_27352320
seq2: B6Ng01-320A24.b_47_1165 (reverse)

seq1  GCAGCCAACTAATACTGGAATTCAATAACGAACTCCAGAGTCATTTACAA  50
      |||| ||||| |||||||| | |||| ||||||| |||||||| ||||||
seq2  GCAG-CAACT-ATACTGGATTCCAAT-ACGAACTTCAGAGTCA-TTACAA  46

seq1  AGAA-TCACAGGTCATCCACGAATCATCCAAATGTTAGCTTTCAGGGAAG  99
      |||| ||||||||||| |||||||||||  ||||||||||||||||  ||
seq2  AGAATTCACAGGTCAT-CACGAATCATC--AATGTTAGCTTTCAGG--AG  91

seq1  AGAAAAGTG-TCTC-TCTTATGGGTTAAAGAGCCTCTGGTGTAACTCAGA  147
      || |||||| |||| ||||||||||| ||||| |||||||||||||||||
seq2  AG-AAAGTGTTCTCTTCTTATGGGTT-AAGAG-CTCTGGTGTAACTCAGA  138

seq1  AAAAGTTAACACA--CTTTTCAGTTTTCATCCTACACACAGAATAGGTTA  195
      ||||  | |||||   ||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTACACAACTTTTTCAGTTTTCATCCTACACACAGAATAGGTTA  188

seq1  TAACCACTATGCAAGCACACAGCACTTGGGGATCTTTCCTTCC-TTTTTT  244
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAACCACTATGCAAGCACACAGCACTTGGGGATCTTTCCTTCCTTTTTTT  238

seq1  TTTTTTTTAGATAGCATTTACTTAGTAATTCCTTAATTCAGTAGCTGCCC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAGATAGCATTTACTTAGTAATTCCTTAATTCAGTAGCTGCCC  288

seq1  TAGCATTACTTTCTTCCTCTAAAGGCTCAAGTTTCTTTCATTTCAAAACA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTACTTTCTTCCTCTAAAGGCTCAAGTTTCTTTCATTTCAAAACA  338

seq1  CCACTCTTGAAGACAAATTC-TTCTCTTAAAAAAAAAAAAAAAAAAAAAG  393
      |||||||||||||||||||| |||||||   |||||||||||||||||||
seq2  CCACTCTTGAAGACAAATTCTTTCTCTT---AAAAAAAAAAAAAAAAAAG  385

seq1  ACTTACTCATGTCACTCAGAAAGAGGGGGCGAAAAGTCAAGAGACAAAAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTCATGTCACTCAGAAAGAGGGGGCGAAAAGTCAAGAGACAAAAC  435

seq1  TGGAGACAGTCCTATTAGTCTTATGTAACTTAGTTTGAGTTGGAATTATT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAGTCCTATTAGTCTTATGTAACTTAGTTTGAGTTGGAATTATT  485

seq1  TCAGTAGTTCAACGAAAGCCTTAGGTTTAGGCCCAAAGAAGAGTTCTTTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGTTCAACGAAAGCCTTAGGTTTAGGCCCAAAGAAGAGTTCTTTA  535

seq1  AAATATTCTCCATTCGTGCAAATTCTTGAAAAACTAAAAAGATCCTTTTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCTCCATTCGTGCAAATTCTTGAAAAACTAAAAAGATCCTTTTT  585

seq1  ATTTTAAAATAAGTAACTAGCAAAGTACAGTGCCAAGATAAACAAGGTAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAATAAGTAACTAGCAAAGTACAGTGCCAAGATAAACAAGGTAA  635

seq1  ATTGGATTAAAAATTAAAAGCAAGGCCCAGCATGGTGAGCTTTAATTCCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATTAAAAATTAAAAGCAAGGCCCAGCATGGTGAGCTTTAATTCCA  685

seq1  GCACTTGGGAGGCAGAGGCAGGGAAATCTCTGAGTTTGAGGCCAGCCTGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGGAGGCAGAGGCAGGGAAATCTCTGAGTTTGAGGCCAGCCTGA  735

seq1  TCTACAGAGTGAGTTCCAGGCCAGTTGGTCCCTGTCTTTAAAATATATGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAGTGAGTTCCAGGCCAGTTGGTCCCTGTCTTTAAAATATATGT  785

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTAGACAATATTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTAGACAATATTG  835

seq1  GATATAATCTAAAAATAAGCTAACTTATTAATACTAATTTTTGCATATCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAATCTAAAAATAAGCTAACTTATTAATACTAATTTTTGCATATCA  885

seq1  TCATATAATTACACATTATCTACCAAAGAAATTGAGAAGTGACTTTCAAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAATTACACATTATCTACCAAAGAAATTGAGAAGTGACTTTCAAG  935

seq1  AGCAATAGATTTCTGTTGATCCAACTTGCAAACAGAACTCCAAAGATGTA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAGATTTCTGTTGATCCAACTTGCAAACAGAACTCCAAAGATGTA  985

seq1  GTTACTTACTCTAGCTTAATTAAATTGCCTTTAATATTTACAAATTATTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTACTCTAGCTTAATTAAATTGCCTTTAATATTTACAAATTATTT  1035

seq1  CATCGGGGCAAGTAAGTATCAATCGTTACAAACAGTAACTTTGCACTCCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGGGGCAAGTAAGTATCAATCGTTACAAACAGTAACTTTGCACTCCA  1085

seq1  GTTATCCTACCAGACAAGGTCCTGAGTTGAATTC  1127
      ||||||||||||||||||||||||||||||||||
seq2  GTTATCCTACCAGACAAGGTCCTGAGTTGAATTC  1119

seq1: chr14_27214798_27215715
seq2: B6Ng01-320A24.g_66_1002

seq1  GAATTCCTGATGCCCTGACCTGCACATACTCTTTTTCTGATGTTTAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATGCCCTGACCTGCACATACTCTTTTTCTGATGTTTAAATG  50

seq1  AACCAATCGTGTGAAACCGCACCAATTCCTCCCCCAGCCCCAGATCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATCGTGTGAAACCGCACCAATTCCTCCCCCAGCCCCAGATCCTTT  100

seq1  TCTATAAAACCCCCTAGCTTTTGAGCCTTGTGGTCGACAACCTCTGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAAACCCCCTAGCTTTTGAGCCTTGTGGTCGACAACCTCTGTCTC  150

seq1  CTGTGTGAGATACGTGTTAGCCCGGAGCGCCGTCATTAAACTACCTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGAGATACGTGTTAGCCCGGAGCGCCGTCATTAAACTACCTCTTG  200

seq1  TGTTTGCATCAAGACGGTCTCTCGTGATTCCTTGGGTGTGCGCCGATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCATCAAGACGGTCTCTCGTGATTCCTTGGGTGTGCGCCGATTAG  250

seq1  GGAATTGAGTGGGGGGTTTTCCCACTAGGTTCTTTCAATCCCATGCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGAGTGGGGGGTTTTCCCACTAGGTTCTTTCAATCCCATGCAGGG  300

seq1  ATCTGAGCTGTAGGAATAATCCGAGCCTTCACTGTAGTCCTGTGTAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGCTGTAGGAATAATCCGAGCCTTCACTGTAGTCCTGTGTAGGTT  350

seq1  CTCTAGAGGCCTGCAGAGAGGACCCCTTCCCGGGTTGTCCACATTCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAGGCCTGCAGAGAGGACCCCTTCCCGGGTTGTCCACATTCACCT  400

seq1  GGCATCTAATCAAGGCCTTGCCTATCTCTTCTGAACTATGACTCATGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTAATCAAGGCCTTGCCTATCTCTTCTGAACTATGACTCATGATA  450

seq1  CCTATGCTGCTATTTTTCAAAAATAAGGTTTCTACATATCAGACGAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCTGCTATTTTTCAAAAATAAGGTTTCTACATATCAGACGAATGC  500

seq1  TCTATTTTTTTAGTCCAGCATGATGGGTATGTCTCAGTTCAAATGTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTTTTAGTCCAGCATGATGGGTATGTCTCAGTTCAAATGTTTTT  550

seq1  AAGGCTGAGGAAAAAAATCTCTGCCCAGGTCTTCTGATCCTTCTCCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGAGGAAAAAAATCTCTGCCCAGGTCTTCTGATCCTTCTCCCCTG  600

seq1  GGGATGCCCAGAATGACCTCTGAAAGATCATGGTGCA-TTTTCCAGTTGA  649
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGGATGCCCAGAATGACCTCTGAAAGATCATGGTGCATTTTTCCAGTTGA  650

seq1  GTAGAGGTGGTGGAGGCTCAACAGCCGACATGGCAGGTCCCCAAAGGCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGTGGTGGAGGCTCAACAGCCGACATGGCAGGTCCCCAAAGGCCT  700

seq1  GTGTCCCAGCTACCTTCCT-CCTCTAGGTGTGAAAAAGTCCAGCATG-AA  747
      ||||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  GTGTCCCAGCTACCTTCCTCCCTCTAGGTGTGAAAAAGTCCAGCATGAAA  750

seq1  CTCAGACAGGCCACAGACCAGGA-CCAGAGCC--TCCTGTAGATCAAGCT  794
      |||||||||||||||||||| || ||||||||   |||||||||||||||
seq2  CTCAGACAGGCCACAGACCATGATCCAGAGCCCTCCCTGTAGATCAAGCT  800

seq1  GCTGCAGAAGGAGCAA--TGAG-CATGCC-TGGTAA--GTGAGCCA-CCA  837
      |||||| |||||||||   ||| | |||| ||||||   ||||||| |||
seq2  GCTGCAAAAGGAGCAAATGGAGCCTTGCCTTGGTAAAGTTGAGCCACCCA  850

seq1  TTGAGCCATT--CTTAG-CAATCAGGCATCCA-TGGGGT-GGGTTTTTGT  882
      ||||||| ||   |||| || ||||   |||| |||||| ||||||||||
seq2  TTGAGCCTTTTCTTTAGCCATTCAGCATTCCATTGGGGTGGGGTTTTTGT  900

seq1  CCTTG-ACCTTGGTTTCCTTTGTGGGAATGGGCACTG  918
      |||||  |||||||| |||||| || ||||||||| |
seq2  CCTTGTCCCTTGGTTCCCTTTGGGGAAATGGGCACCG  937