BAC Information

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BAC

Clone NameB6Ng01-323N02
Chromosome14 (Build37)
Map Location 25,564,947 - 25,798,467
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnma1, LOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24, LOC669315
Downstream geneLOC100039411, Zmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323N02.bB6Ng01-323N02.g
ACCGA112296GA112297
length1,067140
definitionB6Ng01-323N02.b B6Ng01-323N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,564,947 - 25,565,999)(25,798,328 - 25,798,467)
sequence
gaattctgaaaatcatgcagtagtttactaagtgtgtttctttgagataa
agcacaaagggtttgatggtcaaatcagattcataaactgaagctcagac
ccaatatgaagagtaccaagtcttactaatagttgcaaaattcaggtaga
gaggcatatagagtgtggagtgttggaccatagagcatttctccatgact
atacacataaggttgaagcctagcccagatatgtcacaaagagtctctac
atgatacatgagggggcatccctctccagagggagctattttggtaacaa
aaatctctacctaattctcggcttattttatagtttggataacctttccc
agggcaccaccccataaatgcagaggctccatatatgtttactgcaggca
gtgctgggcagatagggcacatcttgctaaaagcattccacagataagaa
cctcgaagcttgccagtatcattagagtgtttgccaggggttctgtcact
agcaggattatgaggaaattggactaggtcattttcctgtcttgcccggg
gtatctctgggtgaaggtagagaatgctttgcagacaggctgttaaccct
ttccttacctgtacctgctctgcccattttctccattggggctgttttct
aggtctctgaccttggcttcctctcttcttattctatacacacacacaca
cacaaaagcacagatgcagcacacacacacaaacacgtagatacacatat
agcacagatacacacatagacacatacacaggcacacatagacacatagg
agcataggtactgacacagacatagacacacagagatacacacatagaca
cacaggcacacatatatacataggcatatagacacacacggacacacact
gacactcacacacacacggaccacacacgacactcacacagaccctcaca
cgtgacacacacgcactcacacacacactcactacactcaccacatacac
gggactcggtttccaatttctgaagtttcctttccttagaacctgtcctc
tgagcctctggcttttt
cttctcaaaaccagacactgcagctctgtatacagtaggaggtcaccagc
agaaagctgggtgtaggtgcagctctgtatacagtaggaggttaccagca
gagagctggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_25564947_25565999
seq2: B6Ng01-323N02.b_49_1108

seq1  GAATTCTGAAAATCATGCAGTAGTTTACTAAGTGTGTTTCTTTGAGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAAATCATGCAGTAGTTTACTAAGTGTGTTTCTTTGAGATAA  50

seq1  AGCACAAAGGGTTTGATGGTCAAATCAGATTCATAAACTGAAGCTCAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAAGGGTTTGATGGTCAAATCAGATTCATAAACTGAAGCTCAGAC  100

seq1  CCAATATGAAGAGTACCAAGTCTTACTAATAGTTGCAAAATTCAGGTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATGAAGAGTACCAAGTCTTACTAATAGTTGCAAAATTCAGGTAGA  150

seq1  GAGGCATATAGAGTGTGGAGTGTTGGACCATAGAGCATTTCTCCATGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATATAGAGTGTGGAGTGTTGGACCATAGAGCATTTCTCCATGACT  200

seq1  ATACACATAAGGTTGAAGCCTAGCCCAGATATGTCACAAAGAGTCTCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATAAGGTTGAAGCCTAGCCCAGATATGTCACAAAGAGTCTCTAC  250

seq1  ATGATACATGAGGGGGCATCCCTCTCCAGAGGGAGCTATTTTGGTAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACATGAGGGGGCATCCCTCTCCAGAGGGAGCTATTTTGGTAACAA  300

seq1  AAATCTCTACCTAATTCTCGGCTTATTTTATAGTTTGGATAACCTTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTACCTAATTCTCGGCTTATTTTATAGTTTGGATAACCTTTCCC  350

seq1  AGGGCACCACCCCATAAATGCAGAGGCTCCATATATGTTTACTGCAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACCACCCCATAAATGCAGAGGCTCCATATATGTTTACTGCAGGCA  400

seq1  GTGCTGGGCAGATAGGGCACATCTTGCTAAAAGCATTCCACAGATAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGCAGATAGGGCACATCTTGCTAAAAGCATTCCACAGATAAGAA  450

seq1  CCTCGAAGCTTGCCAGTATCATTAGAGTGTTTGCCAGGGGTTCTGTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAAGCTTGCCAGTATCATTAGAGTGTTTGCCAGGGGTTCTGTCACT  500

seq1  AGCAGGATTATGAGGAAATTGGACTAGGTCATTTTCCTGTCTTGCCCGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGATTATGAGGAAATTGGACTAGGTCATTTTCCTGTCTTGCCCGGG  550

seq1  GTATCTCTGGGTGAAGGTAGAGAATGCTTTGCAGACAGGCTGTTAACCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCTGGGTGAAGGTAGAGAATGCTTTGCAGACAGGCTGTTAACCCT  600

seq1  TTCCTTACCTGTACCTGCTCTGCCCATTTTCTCCATTGGGGCTGTTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTACCTGTACCTGCTCTGCCCATTTTCTCCATTGGGGCTGTTTTCT  650

seq1  AGGTCTCTGACCTTGGCTTCCTCTCTTCTTATTCTATACACACACACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCTGACCTTGGCTTCCTCTCTTCTTATTCTATACACACACACACA  700

seq1  CACAAAAGCACAGATGCAGCACACACACACAAACACGTAGATACACATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGCACAGATGCAGCACACACACACAAACACGTAGATACACATAT  750

seq1  AGCACAGATACACACATAGACACATACACAGGCACACATAGACACATAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGATACACACATAGACACATACACAGGCACACATAGACACATAGG  800

seq1  AGCATAGGTACTGACACAGACATAGACACACAGAGATACACACATAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGGTACTGACACAGACATAGACACACAGAGATACACACATAGACA  850

seq1  CACAGGCACACATATATACATAGGCATATAGACACACACGGACACACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CACAGGCACACATATATACATAGGCATATAGACACACACGGACACACACT  900

seq1  GACACACACACACACACAGACACACACACAGACACACACACAGACACACA  950
      ||||| ||||||||||| ||| ||||||| ||||| ||||||||| | ||
seq2  GACACTCACACACACACGGAC-CACACAC-GACACTCACACAGACCCTCA  948

seq1  CAC-AGACACACACACACACACACACACACACAC-ACACACA-CACATAC  997
      |||  ||||||||| ||| ||||||||||| ||| |||| || |||||||
seq2  CACGTGACACACACGCACTCACACACACACTCACTACACTCACCACATAC  998

seq1  ACAGGACTC-GTTTCCAA-TTCTGAAGTTTCCTTTCCTTAGA--CTGT-C  1042
      || |||||| |||||||| |||||||||||||||||||||||  |||| |
seq2  ACGGGACTCGGTTTCCAATTTCTGAAGTTTCCTTTCCTTAGAACCTGTCC  1048

seq1  TCTGAG-CTCTG  1053
      |||||| |||||
seq2  TCTGAGCCTCTG  1060

seq1: chr14_25798328_25798467
seq2: B6Ng01-323N02.g_73_212 (reverse)

seq1  ACACACACACACACACACACACACACACACTCCAGCTCTCTGCTGGTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACTCCAGCTCTCTGCTGGTAAC  50

seq1  CTCCTACTGTATACAGAGCTGCACCTACACCCAGCTTTCTGCTGGTGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACTGTATACAGAGCTGCACCTACACCCAGCTTTCTGCTGGTGACC  100

seq1  TCCTACTGTATACAGAGCTGCAGTGTCTGGTTTTGAGAAG  140
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTGTATACAGAGCTGCAGTGTCTGGTTTTGAGAAG  140