BAC Information

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BAC

Clone NameB6Ng01-325E20
Chromosome3 (Build37)14 (Build37)
Map Location 22,169,503 - 22,170,071114,223,313 - 114,224,077
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040325, 7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506
Downstream geneLOC675593, LOC100040378, LOC623751
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325E20.bB6Ng01-325E20.g
ACCGA113395GA113396
length631765
definitionB6Ng01-325E20.b B6Ng01-325E20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(22,169,503 - 22,170,071)(114,223,313 - 114,224,077)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttctttttttttttttttttttttttttttgtgaga
agtcctttaatttgtggcatagcatagttaaatcaagatggttatcatgt
gccttacttttctttttttttttttttttcatttttttttattaggtatt
tagctcatttacatttccaatgctataccaaaagtcccccttacccaccc
acccccactcccctacccacccactccccccctttggccctggcgttccc
ctgtaccggggcacacaaagtctgcgtgtccaatgggcctctctttccag
tgatggccgactaggccatcttttgatacatatgcagctagagtcaagag
ctcaggggtactggttagttcataatgttgttccacctatagggttgaag
ttccctttagctccttgggtactttctctagctcctcattgggagcctgt
gatccatccattagctgactgtgagcatcacttctgtgttgctaggcccc
ggcatagtctcacaagagacagctacatctgggtcttcagtaaaactgct
agtgtatgcaatggtgtcagcattggaagct

gaattctcacctcttagccagatgggcaaaaaagaaaacaagggaagaga
aaagaagagaaaataaaagaaaggaaaggaaaggaaaggaaaggaaagga
aaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaaga
atggataacaaagtaaaaaagatgtgtccagtgtcattacttaccagatc
attataaactaaaatataatttaaaaaatcatttcacatttctaagtatg
aaaacattaaaaattattagagcttaaaagtgttaaaatattacctataa
agatattagaatataaaaatgtaatataggacataccggaaaaagctgta
taaattcatatggtatctatgagatcagtaatatttaaatatttaaattg
agattaatcttttgctatgcaatctcacaactgttcaatattaaactcca
atgtgggagacacactttttattaaattcatttttatttatacatgtttg
tgtgtgttgtgtgggtgtgtgtacctgcgcacctgtgtgtgtgtgtttgt
gtatgtgtgtgtatgtttgcccacaaagatcagaaggtataagatacttg
gagctgcagttccaggttgtaagctagctgatgtggatgctacaaatttg
aactagggtcttctgaagagcagcaagtgctcttaaccttgcatccatct
atctctaagccccacatggtttgtgtttatttgccttgctcccatatctg
aatcttctagctgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_22169503_22170071
seq2: B6Ng01-325E20.b_135_672

seq1  TGTGAGAAATCCTTTAATTTGTGGCATAGCATAGTTAAATCAAGATGGTT  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAAGTCCTTTAATTTGTGGCATAGCATAGTTAAATCAAGATGGTT  50

seq1  ATCATGTGCCTTACTTTTCACATGTCATGTGTATGTATGTGTTATATGTT  100
      |||||||||||||||||||                      || | | ||
seq2  ATCATGTGCCTTACTTTTC----------------------TTTTTTTTT  78

seq1  TCTTTTTTTCCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAAT  150
      | ||||||     |||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCATTTTTTTTTATTAGGTATTTAGCTCATTTACATTTCCAAT  128

seq1  GCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTACCCACC  200
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCTATACCAAAAGTCCCCCTTACCCACCCACCCCCACTCCCCTACCCACC  178

seq1  CACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAGT  250
      |||||||||  ||||||||||| |||||||||||| |||||| | |||||
seq2  CACTCCCCCCCTTTGGCCCTGGCGTTCCCCTGTACCGGGGCACACAAAGT  228

seq1  TTGCAAGTCCAAAGGGCCTCTCTTTGCAGTGCTGGCCGACTAGGCCATCT  300
       |||  |||||| |||||||||||| ||||| ||||||||||||||||||
seq2  CTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCT  278

seq1  TTTGATACATATGCAGCTAGAGACAAGCGCTCCGGGGTACTGCTTAGTTC  350
      |||||||||||||||||||||| |||| |||| ||||||||| |||||||
seq2  TTTGATACATATGCAGCTAGAGTCAAGAGCTCAGGGGTACTGGTTAGTTC  328

seq1  ATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTGAGCTCCTTGGGTG  400
      ||| |||||||||||||||||||||| ||||||||| |||||||||||| 
seq2  ATAATGTTGTTCCACCTATAGGGTTGAAGTTCCCTTTAGCTCCTTGGGTA  378

seq1  CTTTCTCTAGTTCCTCGAATGGAGGCATTGTGGTCCATTCAATAGCTGAC  450
      |||||||||| |||||    |||| |  |||| ||||| || ||||||||
seq2  CTTTCTCTAGCTCCTCATTGGGAGCC--TGTGATCCATCCATTAGCTGAC  426

seq1  TGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGA  500
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  TGTGAGCAT-CACTTCTGTG-TTGCTAGGCCCCGGCATAGTCTCACAAGA  474

seq1  GACAGCTATATCTGGGTCCTTTCAGCAAAATCTTGCTATTGTATGCAATG  550
      |||||||| |||||||||  ||||| ||||   ||||| |||||||||||
seq2  GACAGCTACATCTGGGTC--TTCAGTAAAA--CTGCTAGTGTATGCAATG  520

seq1  GTGTCAGCGTTTGGAAGCT  569
      ||||||||  |||||||||
seq2  GTGTCAGC-ATTGGAAGCT  538


seq1: chr14_114223313_114224077
seq2: B6Ng01-325E20.g_67_831

seq1  GAATTCTCACCTCTTAGCCAGATGGGCAAAAAAGAAAACAAGGGAAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTCTTAGCCAGATGGGCAAAAAAGAAAACAAGGGAAGAGA  50

seq1  AAAGAAGAGAAAATAAAAGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAGAAAATAAAAGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGA  100

seq1  AAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAAGA  150

seq1  ATGGATAACAAAGTAAAAAAGATGTGTCCAGTGTCATTACTTACCAGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATAACAAAGTAAAAAAGATGTGTCCAGTGTCATTACTTACCAGATC  200

seq1  ATTATAAACTAAAATATAATTTAAAAAATCATTTCACATTTCTAAGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAACTAAAATATAATTTAAAAAATCATTTCACATTTCTAAGTATG  250

seq1  AAAACATTAAAAATTATTAGAGCTTAAAAGTGTTAAAATATTACCTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTAAAAATTATTAGAGCTTAAAAGTGTTAAAATATTACCTATAA  300

seq1  AGATATTAGAATATAAAAATGTAATATAGGACATACCGGAAAAAGCTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTAGAATATAAAAATGTAATATAGGACATACCGGAAAAAGCTGTA  350

seq1  TAAATTCATATGGTATCTATGAGATCAGTAATATTTAAATATTTAAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCATATGGTATCTATGAGATCAGTAATATTTAAATATTTAAATTG  400

seq1  AGATTAATCTTTTGCTATGCAATCTCACAACTGTTCAATATTAAACTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAATCTTTTGCTATGCAATCTCACAACTGTTCAATATTAAACTCCA  450

seq1  ATGTGGGAGACACACTTTTTATTAAATTCATTTTTATTTATACATGTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGAGACACACTTTTTATTAAATTCATTTTTATTTATACATGTTTG  500

seq1  TGTGTGTTGTGTGGGTGTGTGTACCTGCGCACCTGTGTGTGTGTGTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTGTGTGGGTGTGTGTACCTGCGCACCTGTGTGTGTGTGTTTGT  550

seq1  GTATGTGTGTGTATGTTTGCCCACAAAGATCAGAAGGTATAAGATACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTGTGTATGTTTGCCCACAAAGATCAGAAGGTATAAGATACTTG  600

seq1  GAGCTGCAGTTCCAGGTTGTAAGCTAGCTGATGTGGATGCTACAAA-TTG  649
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGCTGCAGTTCCAGGTTGTAAGCTAGCTGATGTGGATGCTACAAATTTG  650

seq1  AACTAGGGTCTTCTGAAGAGCAGCAAGTGCTCTTAACCTTGCAGCCATCT  699
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACTAGGGTCTTCTGAAGAGCAGCAAGTGCTCTTAACCTTGCATCCATCT  700

seq1  ATCTCTCAAGCCCCACATGGTTTGTGTTTA-TTGCCTTGCTCCCATATCT  748
      |||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  ATCTCT-AAGCCCCACATGGTTTGTGTTTATTTGCCTTGCTCCCATATCT  749

seq1  GAATCTTCTATGCTGTC  765
      |||||||||| ||||||
seq2  GAATCTTCTA-GCTGTC  765


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