BAC Information

Click to search

BAC

Clone NameB6Ng01-325N06
Chromosome14 (Build37)
Map Location 79,428,910 - 79,665,606
singlet/doubletdoublet
Overlap gene1300010F03Rik, LOC100043765, AU017455
Upstream geneAU021034, Tnfsf11, LOC219180, Akap11, Dgkh, LOC673649, LOC629709
Downstream gene1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325N06.bB6Ng01-325N06.g
ACCGA113786GA113787
length1,215960
definitionB6Ng01-325N06.b B6Ng01-325N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,428,910 - 79,430,126)(79,664,649 - 79,665,606)
sequence
gaattctctttcttggggcaaccagatcttggagtacaggatttagcact
tgtatacacagcaccagaccaacccccaacatgcttgagttttgagagca
gctgtgttttgctagacatttgatgggaacatatttttctaataccatct
aaaaatgctcggctacacttgcataagcattattttaaagtcttgcctgt
tttgttttagaagttcaagtttaatcagctctataatcagctacacagtg
tcatttgggcttggtattaggcaagacttcacggcaaatcatcagcattt
ggcctgtgcttaatgaggtacagttaattattcacagtcgcttctacctg
aacaatcaataaaatcacttctgacttttttcattttaagccaaattttt
gttatgttttacataacaaaataatagctgctatagtttgtagtcttagc
tttttagtgtgtttcatgatttttatttttcccttgtcaagattcgcacg
cccacctgctccctcagcccttggcgatgttgtttttggtaaatggccct
gctttgtcatcttagcctgtgaacgtcctcaggtgctttgttctctagca
aacctttctaatttgctgtcacagagaaattcggtattgctgtcctctaa
acatctatgccatctcttactaggattcaacattaagatagctgtgctgt
gtatttcatttcatctggagttgaattatatagttttcttataaacaagg
gttaaaatcagtgatatgtgtgtgctttacaactactaatgcctttaatc
atttacttagttctacaataacagtaaaataagagttgtgctttctacgt
cttccccacaaatagacaagctttaaaaaggttccagtatttgtccagat
cacatagcccacttagtggcagacttagatcttcccatttttctccatat
cacacaagttctattcgggttattttaataatagtaacaacagcagcaaa
aatacagtggctgacttgttgattattatggtagtcaggatagagactgc
ctttttacacagaataaaggaacattcacattttttctttataatggaag
ttagagtatgaattcatcccactcaacagtcagcacatctggaaaatcct
tctaatttcttcaaacttctaagaaatcgggtccgtgtggcttggcactt
ggggaaggccaaagg
gaattcacacagtctgacatgtggggcggctgccatatgtgaacaacaag
accagaggtgacacagaagccatcaagccctttcaggaaggaccacagat
tctctgagttgtgctgttacaactatacatatacatatggagaatacaga
aaatgacaaggaaaagtgagactcatctatgatcgttgcccaaagataat
tagaattggcatttagaattttcccagaattcttaatgctttttattctg
tctttaaaaacaatgtatgttatatcttagtaattcttccacactgttaa
aaaaaaaaaacttggaaaataccagtctcaatgagtgctattctcccatt
ggctggctattttgatgtttgtataatcaatctaatgttagatatatatt
ttctaatttttgttttgagacagctcctgctgtacagtgcagactggctt
ggatctcactttgtagctcaggttggctttgaactcactaccctccttcg
tctacttcctctgagtgttgcgtttatagacatgtgctaccagatgcagg
ttaattgtctgtttgtttggtactttttggttgtttggttgtttggtttt
tcaagacagggtttctttgtatactagccctggctgtcctagaacttgct
ctgtagactaggctggcctcaaactcacacacacctccctgcctctcctt
tttgagtgctgggattaaaggcgtataccactatgcccagccaagttaat
ttgtttaatatgtatggatgctttgcctgcatgtctgtctgactgcctgc
ctgcaagtctgtctgtctgtctgccctatctgtgtgttcctagtgccatc
agaggccagaagaggacatcagatccactgggaacttgagttatagccca
ttatgggaataccatggaggtggttggaattgtactcagtggtgtttttg
tttatggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_79428910_79430126
seq2: B6Ng01-325N06.b_48_1262

seq1  GAATTCTCTTTCTTGGGGCAACCAGATCTTGGAGTACAGGATTTAGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCTTGGGGCAACCAGATCTTGGAGTACAGGATTTAGCACT  50

seq1  TGTATACACAGCACCAGACCAACCCCCAACATGCTTGAGTTTTGAGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACACAGCACCAGACCAACCCCCAACATGCTTGAGTTTTGAGAGCA  100

seq1  GCTGTGTTTTGCTAGACATTTGATGGGAACATATTTTTCTAATACCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTTTTGCTAGACATTTGATGGGAACATATTTTTCTAATACCATCT  150

seq1  AAAAATGCTCGGCTACACTTGCATAAGCATTATTTTAAAGTCTTGCCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCTCGGCTACACTTGCATAAGCATTATTTTAAAGTCTTGCCTGT  200

seq1  TTTGTTTTAGAAGTTCAAGTTTAATCAGCTCTATAATCAGCTACACAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTAGAAGTTCAAGTTTAATCAGCTCTATAATCAGCTACACAGTG  250

seq1  TCATTTGGGCTTGGTATTAGGCAAGACTTCACGGCAAATCATCAGCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGGGCTTGGTATTAGGCAAGACTTCACGGCAAATCATCAGCATTT  300

seq1  GGCCTGTGCTTAATGAGGTACAGTTAATTATTCACAGTCGCTTCTACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTGCTTAATGAGGTACAGTTAATTATTCACAGTCGCTTCTACCTG  350

seq1  AACAATCAATAAAATCACTTCTGACTTTTTTCATTTTAAGCCAAATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCAATAAAATCACTTCTGACTTTTTTCATTTTAAGCCAAATTTTT  400

seq1  GTTATGTTTTACATAACAAAATAATAGCTGCTATAGTTTGTAGTCTTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTTTTACATAACAAAATAATAGCTGCTATAGTTTGTAGTCTTAGC  450

seq1  TTTTTAGTGTGTTTCATGATTTTTATTTTTCCCTTGTCAAGATTCGCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTGTGTTTCATGATTTTTATTTTTCCCTTGTCAAGATTCGCACG  500

seq1  CCCACCTGCTCCCTCAGCCCTTGGCGATGTTGTTTTTGGTAAATGGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTGCTCCCTCAGCCCTTGGCGATGTTGTTTTTGGTAAATGGCCCT  550

seq1  GCTTTGTCATCTTAGCCTGTGAACGTCCTCAGGTGCTTTGTTCTCTAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTCATCTTAGCCTGTGAACGTCCTCAGGTGCTTTGTTCTCTAGCA  600

seq1  AACCTTTCTAATTTGCTGTCACAGAGAAATTCGGTATTGCTGTCCTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTCTAATTTGCTGTCACAGAGAAATTCGGTATTGCTGTCCTCTAA  650

seq1  ACATCTATGCCATCTCTTACTAGGATTCAACATTAAGATAGCTGTGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTATGCCATCTCTTACTAGGATTCAACATTAAGATAGCTGTGCTGT  700

seq1  GTATTTCATTTCATCTGGAGTTGAATTATATAGTTTTCTTATAAACAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCATTTCATCTGGAGTTGAATTATATAGTTTTCTTATAAACAAGG  750

seq1  GTTAAAATCAGTGATATGTGTGTGCTTTACAACTACTAATGCCTTTAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAATCAGTGATATGTGTGTGCTTTACAACTACTAATGCCTTTAATC  800

seq1  ATTTACTTAGTTCTACAATAACAGTAAAATAAGAGTTGTGCTTTCTACGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTAGTTCTACAATAACAGTAAAATAAGAGTTGTGCTTTCTACGT  850

seq1  CTTCCCCACAAATAGACAAGCTTT-AAAAGGTTCCAGTATTTGTCCAAGA  899
      |||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  CTTCCCCACAAATAGACAAGCTTTAAAAAGGTTCCAGTATTTGTCC-AGA  899

seq1  TCACATAG-CCACTTAGTGGCAGACTTAGATC-TCCCA-TTTTCTCCAAT  946
      |||||||| ||||||||||||||||||||||| ||||| |||||||| ||
seq2  TCACATAGCCCACTTAGTGGCAGACTTAGATCTTCCCATTTTTCTCC-AT  948

seq1  ATCACACAAGTTCTATTCGGTTAATTTTAATAATAGTAACAACAGCAGCA  996
      |||||||||||||||||||| | |||||||||||||||||||||||||||
seq2  ATCACACAAGTTCTATTCGGGTTATTTTAATAATAGTAACAACAGCAGCA  998

seq1  AAAATACAGTGGCTGACTTTGTTGAATAATTATGGTAGTCCAGGATAGAG  1046
      ||||||||||||||||| |||||| || ||||||||||| ||||||||||
seq2  AAAATACAGTGGCTGAC-TTGTTG-ATTATTATGGTAGT-CAGGATAGAG  1045

seq1  ACTGCACTTTTTACACAGAATAAAGG-ACATTCACATTTTTCTTTTAT-A  1094
      ||||| |||||||||||||||||||| ||||||||||||||  ||||| |
seq2  ACTGC-CTTTTTACACAGAATAAAGGAACATTCACATTTTTTCTTTATAA  1094

seq1  TGGAAG-TAGAGTATGTATTCATCCCACTCAACAGTCAGCAACATCTTGA  1143
      |||||| ||||||||| ||||||||||||||||||||||| |||||| ||
seq2  TGGAAGTTAGAGTATGAATTCATCCCACTCAACAGTCAGC-ACATCTGGA  1143

seq1  AAAT-CTTCT-ATTTCTCCAAAACTTCTAAGATTTCCCGTGTCCGTGTGC  1191
      |||| ||||| |||||| | ||||||||||||  |  || ||||||||| 
seq2  AAATCCTTCTAATTTCTTC-AAACTTCTAAGAAAT--CGGGTCCGTGTGG  1190

seq1  GTTTGCACTTGGGTGAAGGCTAAAGG  1217
       || ||||||||| |||||| |||||
seq2  CTTGGCACTTGGG-GAAGGCCAAAGG  1215

seq1: chr14_79664649_79665606
seq2: B6Ng01-325N06.g_69_1028 (reverse)

seq1  ACCCCATATACAAAAACACAACTGAGTACAATTCCAAACACCTCCATGGT  50
      |||||||| |||||||||| ||||||||||||||||| ||||||||||||
seq2  ACCCCATAAACAAAAACACCACTGAGTACAATTCCAACCACCTCCATGGT  50

seq1  A-TCCCATAATGGGCTATAACTCAAGTT-CCAGTGGATCTGATGTCCTCT  98
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTCCCATAATGGGCTATAACTCAAGTTCCCAGTGGATCTGATGTCCTCT  100

seq1  TCTGGCCTCTGATGGCACTAGGAACACACAGATA-GGCAGACAGACAGAC  147
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCTGGCCTCTGATGGCACTAGGAACACACAGATAGGGCAGACAGACAGAC  150

seq1  AGACTTGCAGGCAGGCAGTCAGACAGACATGCAGGCAAAGCATCCATACA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGCAGGCAGGCAGTCAGACAGACATGCAGGCAAAGCATCCATACA  200

seq1  TATTTAAACAAATTAACTTGGCTGGGCATAGTGGTATACGCCTTTAATCC  247
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-TTAAACAAATTAACTTGGCTGGGCATAGTGGTATACGCCTTTAATCC  249

seq1  CAGCACTCAAAAAGGAGAGGCAGGGAGGTGTGTGTGAGTTTGAGGCCAGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTCAAAAAGGAGAGGCAGGGAGGTGTGTGTGAGTTTGAGGCCAGC  299

seq1  CTAGTCTACAGAGCAAGTTCTAGGACAGCCAGGGCTAGTATACAAAGAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTACAGAGCAAGTTCTAGGACAGCCAGGGCTAGTATACAAAGAAA  349

seq1  CCCTGTCTTGAAAAACCAAACAACCAAACAACCAAAAAGTACCAAACAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTTGAAAAACCAAACAACCAAACAACCAAAAAGTACCAAACAAA  399

seq1  CAGACAATTAACCTGCATCTGGTAGCACATGTCTATAAACGCAACACTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAATTAACCTGCATCTGGTAGCACATGTCTATAAACGCAACACTCA  449

seq1  GAGGAAGTAGACGAAGGAGGGTAGTGAGTTCAAAGCCAACCTGAGCTACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGTAGACGAAGGAGGGTAGTGAGTTCAAAGCCAACCTGAGCTACA  499

seq1  AAGTGAGATCCAAGCCAGTCTGCACTGTACAGCAGGAGCTGTCTCAAAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGATCCAAGCCAGTCTGCACTGTACAGCAGGAGCTGTCTCAAAAC  549

seq1  AAAAATTAGAAAATATATATCTAACATTAGATTGATTATACAAACATCAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAGAAAATATATATCTAACATTAGATTGATTATACAAACATCAA  599

seq1  AATAGCCAGCCAATGGGAGAATAGCACTCATTGAGACTGGTATTTTCCAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCAGCCAATGGGAGAATAGCACTCATTGAGACTGGTATTTTCCAA  649

seq1  GTTTTTTTTTTTTAACAGTGTGGAAGAATTACTAAGATATAACATACATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTTAACAGTGTGGAAGAATTACTAAGATATAACATACATT  699

seq1  GTTTTTAAAGACAGAATAAAAAGCATTAAGAATTCTGGGAAAATTCTAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAAAGACAGAATAAAAAGCATTAAGAATTCTGGGAAAATTCTAAA  749

seq1  TGCCAATTCTAATTATCTTTGGGCAACGATCATAGATGAGTCTCACTTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATTCTAATTATCTTTGGGCAACGATCATAGATGAGTCTCACTTTT  799

seq1  CCTTGTCATTTTCTGTATTCTCCATATGTATATGTATAGTTGTAACAGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCATTTTCTGTATTCTCCATATGTATATGTATAGTTGTAACAGCA  849

seq1  CAACTCAGAGAATCTGTGGTCCTTCCTGAAAGGGCTTGATGGCTTCTGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAGAGAATCTGTGGTCCTTCCTGAAAGGGCTTGATGGCTTCTGTG  899

seq1  TCACCTCTGGTCTTGTTGTTCACATATGGCAGCCGCCCCACATGTCAGAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCTGGTCTTGTTGTTCACATATGGCAGCCGCCCCACATGTCAGAC  949

seq1  TGTGTGAATTC  958
      |||||||||||
seq2  TGTGTGAATTC  960