BAC Information

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BAC

Clone NameB6Ng01-326J04
Chromosome14 (Build37)
Map Location 43,614,991 - 43,663,676
singlet/doubletdoublet
Overlap geneEG666376, LOC100041025
Upstream gene1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370
Downstream geneEG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326J04.bB6Ng01-326J04.g
ACCGA114349GA114350
length1,2041,151
definitionB6Ng01-326J04.b B6Ng01-326J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,662,472 - 43,663,676)(43,614,991 - 43,615,934)
sequence
gaattcagaacaatatactacccaatgaaaagcccagggacaagtttggg
ttatcttgtttggggttgctcatcattgagtctcatacacactccccagt
cattaaagactgatgccattgctcttccttcctttctggaagataatggt
aagaacacattgctgaagaagatggtatctggcacaggcatcaattcagg
catctatctcattattttctgtgtggtgagaacatatttattactctttt
gcagttacttggagatatttgaccattgcaacccatcaaatttctataga
cgtggtaatcccttggtagctgagattgcaactccctgtcccccatcacc
ctcccaacatctgtcttaagatctggcaactgttattctaatttcagctt
ctctaagtgggctaaactgaagagggagcccagggcctcatgcataccaa
gcagcaaacactgcaggagaatacactacacttcaccacaacacactgca
ccacaccacactacagtacactacactagagcacccccagtccacctgtt
tctctgagatcaactttctttcttagccctttctcagccttcctgcatgg
attatctgcccaaacaaggtgaatgtaataaaacaaagtgaacattttct
acttttataatccacattgaaatttgatgtgaactctgtgcagagttcat
gaccaccaggagcacctggcctcccttctccccattgtcacttactgggt
tctctctccattttttctgttgtctttctaatctgaggatacagccttgg
atactcagattttgggtactttgtcctttccttcagacctctgtattttg
ctgtgtctccccttaggcctctgtgcatcaggctgagtacttagtagagc
tgtttctaactctgcatcagcagatacccacaagagcttctgggccctca
gacaggtggtcttcaaagatttagagagagatgtgactctgagacacctc
gactcctgcagacggatggctgctgaacaaactccatgactagttgtccc
aggagggtttggggactcctccaaatcttgctgcactgcagcttctccta
cattccattgtggaatgcctacaaggttaagaaggatcagccagttacca
acaaggtggccacatggatgcattccgaaggcatgttacagagaaagctg
aaag
gaattccacgggcctatatttaggagtctggggacagggacccacaaaat
cctggacatccagacagtgctggggtgcagagagttcacagcaggtttga
ccctgctggcctgcaaggataacagggcaaggggttctcagaatcttaga
catgcaggcactgctagaagtctcagaggagctgagcatggaggaggcca
gcaggctgagaactagccctgaaatcagggaatggggaattctggattag
ctcagaggtgactagcccaggagtattgaggggccttctgttggagactt
agatggcaaggctctgtaggcaaaggctttttctccatgtaacccacagt
tggtttgatgagagagacagtccttggttgtaaactgtttattgcttttc
atggaaaagaaagcataacatgtcttgaggttagactagaagttaagtac
cttgtgaggaaggaatgtccaggaagggaaggttattgactgaaccctac
catcttctaggtacctcattagcagggaaaaccctattctgttctaaatg
accacaggccatgttcctatgtagagattttggtcccatgaaagaggcct
gctaggaagcaggtgacacttttgccatctactttaggtctgggacttcc
aacccactcaaatttaccaaattctggacatggtagtctactgtcccagg
tcttagtctgagatttattgatatgaggaaacaccaggacatatgtttag
tatgcgggtctcagtgcctaccctccacactgacacaatgtttctaacaa
ggccacaactcctaaaagtaacacccccatattcaagccaccacactcct
ctgcaatctcccaagacatttacctcactctgtcctactgttttcctttt
tctccttcacaaattatgtgttctattatttcttgaatatcctcctataa
cccaacactagtgcattaccttctatggatactgaagtttaaatgcacat
ctctaagacattcaatgttaccatccctcataagacacattcatggagtt
ccttgtccttttttgggtgtgggtcatatccactcagaaaagaatattca
tgtctctatcccattaaccctgtaaagtccatttaattggtcacagcttc
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_43662472_43663676
seq2: B6Ng01-326J04.b_49_1252 (reverse)

seq1  CTTTCAGCTTCTCCTGTACCATGCCTTTCTGGATGCATCCATGTGGCCAC  50
      ||||||||||   ||||| |||||| ||| | ||||||||||||||||||
seq2  CTTTCAGCTTTCTCTGTAACATGCC-TTCGGAATGCATCCATGTGGCCAC  49

seq1  CTTGTTGGTACTTGACTGATCC-TCTTAACCTGTAAGGCA-TCCACATTG  98
      ||||||||||  || ||||||| |||||||||   ||||| |||||| ||
seq2  CTTGTTGGTAACTGGCTGATCCTTCTTAACCTTGTAGGCATTCCACAATG  99

seq1  AATTGTAGGAGAAGCTGCAGTGCAGCCAGATTTGGAGGAGTCCCAAAACC  148
       | ||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  GAATGTAGGAGAAGCTGCAGTGCAGCAAGATTTGGAGGAGTCCCCAAACC  149

seq1  CTCCTGGGACAACTAGTCATGGAGTTTGTTCAGCAGCCATCCGTCTGCAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGGACAACTAGTCATGGAGTTTGTTCAGCAGCCATCCGTCTGCAG  199

seq1  GAGTCGAGGTGTTCTTCAGAGTCACATCTCTTCTCTAAATCTTTGAAGAA  248
      ||||||||||||   ||||||||||||||| ||||||||||||||||| |
seq2  GAGTCGAGGTGT--CTCAGAGTCACATCTC-TCTCTAAATCTTTGAAG-A  245

seq1  CCACCTGTCTGAGGG-CCAGAAGCTCTTGTGGGTATCTGCTGATGCAGAG  297
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCACCTGTCTGAGGGCCCAGAAGCTCTTGTGGGTATCTGCTGATGCAGAG  295

seq1  TTAGAAACAGCTCTACTAAGTACTCAGCCTGATGCACAGAGGCCTAAGGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACAGCTCTACTAAGTACTCAGCCTGATGCACAGAGGCCTAAGGG  345

seq1  GAGACACAGC-AAATACAGAGGTCTGAAGGAAAGGACAAAGTACCCAAAA  396
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAGACACAGCAAAATACAGAGGTCTGAAGGAAAGGACAAAGTACCCAAAA  395

seq1  TCTGAGTATCCAAGGCTGTATCCTCAGATTAGAAAGACAACAGAAAAAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTATCCAAGGCTGTATCCTCAGATTAGAAAGACAACAGAAAAAAT  445

seq1  GGAGAGAGAACCCAGTAAGTGACAATGGGGAGAAGGGAGGCCAGGTGCTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGAACCCAGTAAGTGACAATGGGGAGAAGGGAGGCCAGGTGCTC  495

seq1  CTGGTGGTCATGAACTCTGCACAGAGTTCACATCAAATTTCAATGTGGAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGTCATGAACTCTGCACAGAGTTCACATCAAATTTCAATGTGGAT  545

seq1  TATAAAAGTAGAAAATGTTCACTTTGTTTTATTACATTCACCTTGTTTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGTAGAAAATGTTCACTTTGTTTTATTACATTCACCTTGTTTGG  595

seq1  GCAGATAATCCATGCAGGAAGGCTGAGAAAGGGCTAAGAAAGAAAGTTGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAATCCATGCAGGAAGGCTGAGAAAGGGCTAAGAAAGAAAGTTGA  645

seq1  TCTCAGAGAAACAGGTGGACTGGGGGTGCTCTAGTGTAGTGTACTGTAGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGAAACAGGTGGACTGGGGGTGCTCTAGTGTAGTGTACTGTAGT  695

seq1  GTGGTGTGGTGCAGTGTGTTGTGGTGAAGTGTAGTGTATTCTCCTGCAGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTGGTGCAGTGTGTTGTGGTGAAGTGTAGTGTATTCTCCTGCAGT  745

seq1  GTTTGCTGCTTGGTATGCATGAGGCCCTGGGCTCCCTCTTCAGTTTAGCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTGCTTGGTATGCATGAGGCCCTGGGCTCCCTCTTCAGTTTAGCC  795

seq1  CACTTAGAGAAGCTGAAATTAGAATAACAGTTGCCAGATCTTAAGACAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGAGAAGCTGAAATTAGAATAACAGTTGCCAGATCTTAAGACAGA  845

seq1  TGTTGGGAGGGTGATGGGGGACAGGGAGTTGCAATCTCAGCTACCAAGGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGAGGGTGATGGGGGACAGGGAGTTGCAATCTCAGCTACCAAGGG  895

seq1  ATTACCACGTCTATAGAAATTTGATGGGTTGCAAAGGTCAAATATCTCCA  946
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATTACCACGTCTATAGAAATTTGATGGGTTGCAATGGTCAAATATCTCCA  945

seq1  AGTAACTGCAAAAGAGTAATAAATATGTTCTCACCACACAGAAAATAATG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTGCAAAAGAGTAATAAATATGTTCTCACCACACAGAAAATAATG  995

seq1  AGATAGATGCCTGAATTGATGCCTGTGCCAGATACCATCTTCTTCAGCAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATGCCTGAATTGATGCCTGTGCCAGATACCATCTTCTTCAGCAA  1045

seq1  TGTGTTCTTACCATTATCTTCCAGAAAGGAAGGAAGAGCAATGGCATCAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTACCATTATCTTCCAGAAAGGAAGGAAGAGCAATGGCATCAG  1095

seq1  TCTTTAATGACTGGGGAGTGTGTATGAGACTCAATGATGAGCAACCCCAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATGACTGGGGAGTGTGTATGAGACTCAATGATGAGCAACCCCAA  1145

seq1  ACAAGATAACCCAAACTTGTCCCTGGGCTTTTCATTGGGTAGTATATTGT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATAACCCAAACTTGTCCCTGGGCTTTTCATTGGGTAGTATATTGT  1195

seq1  TCTGAATTC  1205
      |||||||||
seq2  TCTGAATTC  1204

seq1: chr14_43614991_43615934
seq2: B6Ng01-326J04.g_266_1218

seq1  CAGCAGGCTGAGAACTAGCCCTGAAATCAGGGAATGGGGAATTCTGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGCTGAGAACTAGCCCTGAAATCAGGGAATGGGGAATTCTGGATT  50

seq1  AGCTCAGAGGTGACTAGCCCAGGAGTATTGAGGGGCCTTCTGTTGGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGAGGTGACTAGCCCAGGAGTATTGAGGGGCCTTCTGTTGGAGAC  100

seq1  TTAGATGGCAAGGCTCTGTAGGCAAAGGCTTTTTCTCCATGTAACCCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGGCAAGGCTCTGTAGGCAAAGGCTTTTTCTCCATGTAACCCACA  150

seq1  GTTGGTTTGATGAGAGAGACAGTCCTTGGTTGTAAACTGTTTATTGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTTGATGAGAGAGACAGTCCTTGGTTGTAAACTGTTTATTGCTTT  200

seq1  TCATGGAAAAGAAAGCATAACATGTCTTGAGGTTAGACTAGAAGTTAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAAAAGAAAGCATAACATGTCTTGAGGTTAGACTAGAAGTTAAGT  250

seq1  ACCTTGTGAGGAAGGAATGTGCAGGAAGGGAAGGTTATTGACTGAACCCT  300
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACCTTGTGAGGAAGGAATGTCCAGGAAGGGAAGGTTATTGACTGAACCCT  300

seq1  ACCATCTTCTAGGTACCTCATTAGCAGGGAAAACCCTATTCTGTTCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTTCTAGGTACCTCATTAGCAGGGAAAACCCTATTCTGTTCTAAA  350

seq1  TGACCACAGGCCATGTTCCTATGTAGAGATTTTGGTCCCATGAAAGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACAGGCCATGTTCCTATGTAGAGATTTTGGTCCCATGAAAGAGGC  400

seq1  CTGCTAGGAAGCAGGTGACACTTTTGCCATCTACTTTAGGTCTGGGACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGGAAGCAGGTGACACTTTTGCCATCTACTTTAGGTCTGGGACTT  450

seq1  CCAACCCACTCAAATTTACCAAATTCTGGACATGGTAGTCTACTGTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCACTCAAATTTACCAAATTCTGGACATGGTAGTCTACTGTCCCA  500

seq1  GGTCTTAGTCTGAGATTTATTGATGTGAGGAGACACCAGGACATATGTTT  550
      |||||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  GGTCTTAGTCTGAGATTTATTGATATGAGGAAACACCAGGACATATGTTT  550

seq1  AGTATGAGGGTCTGAATGCCTACCCTCCACACTGACACACTGTTTCTAAC  600
      |||||| |||||| | ||||||||||||||||||||||| ||||||||||
seq2  AGTATGCGGGTCTCAGTGCCTACCCTCCACACTGACACAATGTTTCTAAC  600

seq1  AAGGCCACAACTCCTAAAAGTACCACCTCCATATTCAAGCCACCACACTC  650
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  AAGGCCACAACTCCTAAAAGTAACACCCCCATATTCAAGCCACCACACTC  650

seq1  CTCTGCAATCTCCCAAGACATTTACCTCACTCTGTCCTATTGTTTTCCTT  700
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTCTGCAATCTCCCAAGACATTTACCTCACTCTGTCCTACTGTTTTCCTT  700

seq1  TTTTTCCTTCACAAATTATGTGTTCTATTATTTTCTTGAAATATCCTCCT  750
      ||| |||||||||||||||||||||||||| ||||||| |||||||||||
seq2  TTTCTCCTTCACAAATTATGTGTTCTATTA-TTTCTTG-AATATCCTCCT  748

seq1  ATAACCCAACACTAGTGCATTACCTTCTATGGATACTGCAGTTTAAATGC  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATAACCCAACACTAGTGCATTACCTTCTATGGATACTGAAGTTTAAATGC  798

seq1  ACATCTCT-AGACATTCAATGTTACCAT-CCACATAAGACACATT-AT-G  846
      |||||||| ||||||||||||||||||| || ||||||||||||| || |
seq2  ACATCTCTAAGACATTCAATGTTACCATCCCTCATAAGACACATTCATGG  848

seq1  TGGTATTTGTC--TTTTTGGGTCTTGTTTATAT-CACTCAG-AAAGATTA  892
       | |  |||||  ||||||||| | | | |||| ||||||| ||||| ||
seq2  AGTTCCTTGTCCTTTTTTGGGTGTGGGTCATATCCACTCAGAAAAGAATA  898

seq1  TTCATGTCTCCAT-CCATTAA-CCTGTAAATTTCATTTATATTGTCACAG  940
      |||||||||| || ||||||| |||||||| | ||||||  | |||||||
seq2  TTCATGTCTCTATCCCATTAACCCTGTAAAGTCCATTTAATTGGTCACAG  948

seq1  -TTCA  944
       ||||
seq2  CTTCA  953