BAC Information

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BAC

Clone NameB6Ng01-329I01
Chromosome14 (Build37)
Map Location 94,249,610 - 94,250,745
singlet/doubletsinglet
Overlap genePcdh9
Upstream geneLOC668566
Downstream geneLOC100043356, LOC100043783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329I01.bB6Ng01-329I01.g
ACCGA116447GA116448
length1,1181,170
definitionB6Ng01-329I01.b B6Ng01-329I01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagcagaaactacatgagcaaatgcttccctagacagttataggt
ctaagataatgcaactggtaagagagtaacttaaatatagtatttctgta
tgtggagtatgtgtaatactacaacagggatcatgttatctatgtagaaa
tatgttcatacttagatatgcaacatattgtataattgattataaagagt
atatatttccatatgatgaaattatattttgtctctctccatgtgtgtgt
gtctttgtgtttgtgtgtacattcatagagatgatgtaggcaagcatgtg
ccatggtacacatgtggaattcagctgacaacacgaatgtcagttttcac
acactaactaatatgttaaaaggacatctttcttattttgcagatgctta
tactattctagatgaaacatcagcttttttgaaatctcttgtctccacct
catgacttcctgcagaactgaccattttgaatacaggctagggctacaat
atctagctatatattgtttctggggacttgaactcagttactcacactta
tgtggccattgagccatctcaccaagccaggaaaatattacatgtgaaac
taacataatctaggtttagtgcaaacatcaatcattgaaatattgtttgt
tcatgtactcaacttatttttaaacctttttttaacagcactgtgtagtt
tattcttaaacctttttaagaacatggattaggaaaacatataacataaa
tctataaaaaaacaaaaacaaaaaaaaacagaaatctcagtgacatggaa
aagttatacagtttatatttttcaagtattgtaagcatctttgttaggtt
aggtttttttacacattaatcttgcatacaaagatgaaacaatatggagg
aatctgttcaaatggctctcatagtaacttgaatgtgaagaaagtagatt
ccaatgaacactatggatcttgatgatgaggacattctaaaactacctat
agttgtttaaccttaaatatgatttgtaatcagagtgagagctccatgct
gtttcacataatagaaaacatttaagaaaagctcctctagactcttggct
tctgttctcccctgtcct

gaattctttgtttagctctgtaccccatttttaatggagttatttgaatt
tctggagttcaggttcttgagctctgtatatattggatattagtccccta
tcatatttaggattggtaaaaattctttctcaatctgttggtgacctttt
tgtcttattgatggtgtcttttgccctacagaagctttgcaaccttgtga
agtcccatttgtcgaaagatctgtatgacgagaacttcaagtctctgaag
aaagaaattgatctcagaagatggaaagatctccagtgctcatggattgg
caggattaatatagtaaaaatggctatcctgctgaaagctatctacagat
ttaatgcaatccccatcaaaataccaactcaattcttcactgagttagaa
agggcaatgtgcaaattcatctagaattacaaaaaacctaggatagcaaa
aactattcttaacaataaaagaacctctgggggaatcaccatgtctgacc
ttaagctgtactacagagcaattgtgataaaaaaaaaaaaaaacccttca
tggtactggtacagggacagataggtagataatggaatagaattgaagac
ccagaaatgaacccacacacctatggtcacctgatctttgacaagggagc
taaaaacatctagtggaaaaaaagacagcattttcaacaaatggtgctgg
cacaactggcagttatcatgcagaagattgtgaattgatccattcttatc
tccttgtacaaagctcaagtctaagtggaccaaagacctccacataaaac
cagagacactgaaatttatagaggagaaagtgggggaaaccctcaaagac
atgggcacagggaaaaaaattcctaaacagaacagcaatagcctgtactg
taagatcaagactctgattccatttcttataaatagcagtacatactctg
cagtgttatttgttagaagaatgtgatttcaaagtattagaagttaaaag
attatactatttttcagaagaagaactttggccattcagaactggtggga
atctgccaagactaatgagggttttcaacttggcacaactgcagttttta
ttatgatatggaactatgttgaaccggtagccatgggctggaattgagta
ttggatcttgctctggcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_94249610_94250745
seq2: B6Ng01-329I01.b_46_1163

seq1  GAATTCAGCAGAAACTACATGAGCAAATGCTTCCCTAGACAGTTATAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGAAACTACATGAGCAAATGCTTCCCTAGACAGTTATAGGT  50

seq1  CTAAGATAATGCAACTGGTAAGAGAGTAACTTAAATATAGTATTTCTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATAATGCAACTGGTAAGAGAGTAACTTAAATATAGTATTTCTGTA  100

seq1  TGTGGAGTATGTGTAATACTACAACAGGGATCATGTTATCTATGTAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGTATGTGTAATACTACAACAGGGATCATGTTATCTATGTAGAAA  150

seq1  TATGTTCATACTTAGATATGCAACATATTGTATAATTGATTATAAAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCATACTTAGATATGCAACATATTGTATAATTGATTATAAAGAGT  200

seq1  ATATATTTCCATATGATGAAATTATATTTTGTCTCTCTCCATGTGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTCCATATGATGAAATTATATTTTGTCTCTCTCCATGTGTGTGT  250

seq1  GTCTTTGTGTTTGTGTGTACATTCATAGAGATGATGTAGGCAAGCATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTGTTTGTGTGTACATTCATAGAGATGATGTAGGCAAGCATGTG  300

seq1  CCATGGTACACATGTGGAATTCAGCTGACAACACGAATGTCAGTTTTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTACACATGTGGAATTCAGCTGACAACACGAATGTCAGTTTTCAC  350

seq1  ACACTAACTAATATGTTAAAAGGACATCTTTCTTATTTTGCAGATGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAACTAATATGTTAAAAGGACATCTTTCTTATTTTGCAGATGCTTA  400

seq1  TACTATTCTAGATGAAACATCAGCTTTTTTGAAATCTCTTGTCTCCACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTCTAGATGAAACATCAGCTTTTTTGAAATCTCTTGTCTCCACCT  450

seq1  CATGACTTCCTGCAGAACTGACCATTTTGAATACAGGCTAGGGCTACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTTCCTGCAGAACTGACCATTTTGAATACAGGCTAGGGCTACAAT  500

seq1  ATCTAGCTATATATTGTTTCTGGGGACTTGAACTCAGTTACTCACACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCTATATATTGTTTCTGGGGACTTGAACTCAGTTACTCACACTTA  550

seq1  TGTGGCCATTGAGCCATCTCACCAAGCCAGGAAAATATTACATGTGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCATTGAGCCATCTCACCAAGCCAGGAAAATATTACATGTGAAAC  600

seq1  TAACATAATCTAGGTTTAGTGCAAACATCAATCATTGAAATATTGTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAATCTAGGTTTAGTGCAAACATCAATCATTGAAATATTGTTTGT  650

seq1  TCATGTACTCAACTTATTTTTAAACCTTTTTTTAACAGCACTGTGTAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTACTCAACTTATTTTTAAACCTTTTTTTAACAGCACTGTGTAGTT  700

seq1  TATTCTTAAACCTTTTTAAGAACATGGATTAGGAAAACATATAACATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTAAACCTTTTTAAGAACATGGATTAGGAAAACATATAACATAAA  750

seq1  TCTATAAAAAAACAAAAACAAAAAAAAACAGAAATCTCAGTGACATGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAAAAAACAAAAACAAAAAAAAACAGAAATCTCAGTGACATGGAA  800

seq1  AAGTTATACAGTTTATATTTTTCAAGTATTGTAAGCATCTTTGTTAGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATACAGTTTATATTTTTCAAGTATTGTAAGCATCTTTGTTAGGTT  850

seq1  AGGTTTTTTTACACATTAATCTTGCATACAAAGATGAAACAATATGGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTTTACACATTAATCTTGCATACAAAGATGAAACAATATGGAGG  900

seq1  AATCTGTTCAAATGGCTCTCATAGTAACTTGAATGTGAAGAAAGTAGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTTCAAATGGCTCTCATAGTAACTTGAATGTGAAGAAAGTAGATT  950

seq1  CCAATGAACACTATGGATCTTGATGAATGAGGACATTCTAAAACTAACTT  1000
      ||||||||||||||||||||||||| ||||||||||||||||||| || |
seq2  CCAATGAACACTATGGATCTTGATG-ATGAGGACATTCTAAAACT-ACCT  998

seq1  ATAGTTGTTTACCTTTAAATATGATTTGTAATCAGGAAGTGAAGAGCTCA  1050
      ||||||||||| | |||||||||||||||||||||  |||| ||||||| 
seq2  ATAGTTGTTTAACCTTAAATATGATTTGTAATCAG--AGTG-AGAGCTCC  1045

seq1  TGGCTGTTTTCACATAATAGAAAAACAATTTTATAGGAAAAAAAGGCTCC  1100
        |||| |||||||||||||||||   ||||       || ||| |||||
seq2  ATGCTG-TTTCACATAATAGAAAA--CATTT-------AAGAAAAGCTCC  1085

seq1  TCTAGCTCTCTTGTCTTCTTGTTCTCCCTCTGTCCT  1136
      |||||  |||||| |||| ||||||||| |||||||
seq2  TCTAG-ACTCTTGGCTTC-TGTTCTCCC-CTGTCCT  1118


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