BAC Information

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BAC

Clone NameB6Ng01-330D23
Chromosome14 (Build37)
Map Location 96,913,789 - 97,070,171
singlet/doubletdoublet
Overlap geneKlhl1
Upstream gene4921530L21Rik
Downstream geneLOC100043366, LOC668654, EG668659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330D23.bB6Ng01-330D23.g
ACCGA116982GA116983
length1,0141,149
definitionB6Ng01-330D23.b B6Ng01-330D23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,069,165 - 97,070,171)(96,913,789 - 96,914,937)
sequence
gaattcaactctgattattttttctataattttcagatatgagtgaagac
aacttgcaattatcattcttcagaatgaggtaaactgaagctaacaaaaa
aatctaccactgctctagttgtacatatactatatgatatacacctatat
tgtctagaaagtattatctgtttacaagacattttagcctgtacattatt
cttcccttgagacactatatcttttcaattgtgaacatttttaggcatgt
ggacatttacattttgtactagaaaaataactgtctttgtggtcagtgtg
atcaagtaaagatcaaagtgaccaaacactggattccaatacaactttaa
gcacaatgctacttatgattgctatagttaaaaatgtgcataaaaataca
actttaaatttatgacattcatatttctaacacctattagaggattgata
ctcttctgttttgccacaactaaagcgtgtttatgtaagcattgaacttg
atggagctaaaattgttatgctatcagaacacttaattagtctattcatt
ttgtcaataatgacagtgaaactttcattccatctatgccttaatacccc
attttaaatataactttaaaatatttctgatctaaggaattgtgggaaaa
catggattgtgtgtgtgtttgtgtgtgtgtgtgtgtgattttcatatgag
aaaaaggaatatgccttgctaagaattaaactaatgtgacaaataatttg
gagataaaatggaaattatacacctaggtttctgtccaaagtttcttact
cattatttcaaaacaatctaagttttgtgttctatggctattataccata
aaatatagccattccctctcacataatttccctgagtaaattgagacaat
tcttattgttcttttcctctgaagctcacaaatatccactaaacacctag
tcacttgcttttcccaattacccctttatattgcataactaaattatgtg
ttaacttattataa

gaattcttgtctatgtccttgctaaagacatggaaccaggtaaatatact
gttaataaagcagaaagaacaaacaggtaaaacatgtttttttttcctat
tgtcatttataaagctatgatatatgaaccatacaatgtcatgtaccata
taaatataaatgtgagaataaagtgttcttttttttgccttattacatag
ctgatagaattttggaaacatatatgaaatgtatggaatcatatatttta
aatatgtttggacataaatatatgtaaattagtgagtaggaaagaaatga
atcatcaacttattttgtaaagtatcttcaaggatataatcaagacattg
gaagcttgagacttgtttatcatggtataaagtagcaggtattgaagagg
gtgagatggcaccattttggtagaaagttggtttatgtctgtcaaggaat
ctttatgttgcaagtccatgaaaatttgatttttccagcattcaaaaatc
atgagtatctttcttctgaatgttctccacctgcagttttaaaaaacagg
cttaactaactgaagatccatagtcatgtaaacagtatttctatttagta
ccagagcaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaa
agaaaagaaaagaaaagaagaaaagaaaagaaaaagggaaggctcacctt
tgctttaaggttgagataattttatgcagtggagagttgatgagaaatat
gatatatattcaattcaatcaagtttttatagtttttagcatatatatat
atatatatatatatatgctgcttcatctgaatatcattcacaactatgaa
tagtacagagttttccaacatgttagatctatattccagattagatagga
taaagttgtaagttgaaataaagttttttctaagtattttactctgcagt
tcctatggtgcctgggcgatgagccctatgcttattagaaattagatata
ttgagaatgactaatttgcctccattttactgggtgttctcaaatcagtc
atgaacacagaagtcaatgtctgtaaacttgtaaaaagaacaaaatatgc
cctcgaagtagcctagaaaagaatgtcacgtttatctacacttcttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_97069165_97070171
seq2: B6Ng01-330D23.b_47_1060 (reverse)

seq1  TTATAAATAAGTTAACACATAA-TTAGTTATGCAATATAAA-GGGTAATT  48
      |||| ||||||||||||||||| |||||||||||||||||| ||||||||
seq2  TTAT-AATAAGTTAACACATAATTTAGTTATGCAATATAAAGGGGTAATT  49

seq1  -GGAAAAGCAAGTGACTAGGTGTTTAGTGGATATTTGGTGAGCTTCAGAG  97
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGGAAAAGCAAGTGACTAGGTGTTTAGTGGATATTT-GTGAGCTTCAGAG  98

seq1  GAAAAGAACAATAAGAATTTGTCTCAATTTACTCAGGGAATTTATGTGAG  147
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  GAAAAGAACAATAAGAA-TTGTCTCAATTTACTCAGGGAAATTATGTGAG  147

seq1  A-GGAATGACTATA-TTTAT-GTATAATAG-CATAGAACAC-AAACTTAG  192
      | |||||| ||||| ||||| ||||||||| |||||||||| ||||||||
seq2  AGGGAATGGCTATATTTTATGGTATAATAGCCATAGAACACAAAACTTAG  197

seq1  ATTGGTTTTGAATAATGAGTAAG-AACTTTGGACAG-AACCTAGGTGTAT  240
      |||| |||  ||||||||||||| |||||||||||| |||||||||||||
seq2  ATTGTTTTGAAATAATGAGTAAGAAACTTTGGACAGAAACCTAGGTGTAT  247

seq1  AATTTCCATTTTATCTCCAAATTATTTGTCACATTAGTTTAATTCTTAGC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCATTTTATCTCCAAATTATTTGTCACATTAGTTTAATTCTTAGC  297

seq1  AAGGCATATTCCTTTTTCTCATATGAAAATCACACACACACACACACAAA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATATTCCTTTTTCTCATATGAAAATCACACACACACACACACAAA  347

seq1  CACACACACAATCCATGTTTTCCCACAATTCCTTAGATCAGAAATATTTT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAATCCATGTTTTCCCACAATTCCTTAGATCAGAAATATTTT  397

seq1  AAAGTTATATTTAAAATGGGGTATTAAGGCATAGATGGAATGAAAGTTTC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATATTTAAAATGGGGTATTAAGGCATAGATGGAATGAAAGTTTC  447

seq1  ACTGTCATTATTGACAAAATGAATAGACTAATTAAGTGTTCTGATAGCAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATTATTGACAAAATGAATAGACTAATTAAGTGTTCTGATAGCAT  497

seq1  AACAATTTTAGCTCCATCAAGTTCAATGCTTACATAAACACGCTTTAGTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTTAGCTCCATCAAGTTCAATGCTTACATAAACACGCTTTAGTT  547

seq1  GTGGCAAAACAGAAGAGTATCAATCCTCTAATAGGTGTTAGAAATATGAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAAAACAGAAGAGTATCAATCCTCTAATAGGTGTTAGAAATATGAA  597

seq1  TGTCATAAATTTAAAGTTGTATTTTTATGCACATTTTTAACTATAGCAAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATAAATTTAAAGTTGTATTTTTATGCACATTTTTAACTATAGCAAT  647

seq1  CATAAGTAGCATTGTGCTTAAAGTTGTATTGGAATCCAGTGTTTGGTCAC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTAGCATTGTGCTTAAAGTTGTATTGGAATCCAGTGTTTGGTCAC  697

seq1  TTTGATCTTTACTTGATCACACTGACCACAAAGACAGTTATTTTTCTAGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCTTTACTTGATCACACTGACCACAAAGACAGTTATTTTTCTAGT  747

seq1  ACAAAATGTAAATGTCCACATGCCTAAAAATGTTCACAATTGAAAAGATA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGTAAATGTCCACATGCCTAAAAATGTTCACAATTGAAAAGATA  797

seq1  TAGTGTCTCAAGGGAAGAATAATGTACAGGCTAAAATGTCTTGTAAACAG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCTCAAGGGAAGAATAATGTACAGGCTAAAATGTCTTGTAAACAG  847

seq1  ATAATACTTTCTAGACAATATAGGTGTATATCATATAGTATATGTACAAC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACTTTCTAGACAATATAGGTGTATATCATATAGTATATGTACAAC  897

seq1  TAGAGCAGTGGTAGATTTTTTTGTTAGCTTCAGTTTACCTCATTCTGAAG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCAGTGGTAGATTTTTTTGTTAGCTTCAGTTTACCTCATTCTGAAG  947

seq1  AATGATAATTGCAAGTTGTCTTCACTCATATCTGAAAATTATAGAAAAAA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAATTGCAAGTTGTCTTCACTCATATCTGAAAATTATAGAAAAAA  997

seq1  TAATCAGAGTTGAATTC  1007
      |||||||||||||||||
seq2  TAATCAGAGTTGAATTC  1014


seq1: chr14_96913789_96914937
seq2: B6Ng01-330D23.g_65_1213

seq1  GAATTCTTGTCTATGTCCTTGCTAAAGACATGGAACCAGGTAAATATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCTATGTCCTTGCTAAAGACATGGAACCAGGTAAATATACT  50

seq1  GTTAATAAAGCAGAAAGAACAAACAGGTAAAACATGTTTTTTTTTCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAAAGCAGAAAGAACAAACAGGTAAAACATGTTTTTTTTTCCTAT  100

seq1  TGTCATTTATAAAGCTATGATATATGAACCATACAATGTCATGTACCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTTATAAAGCTATGATATATGAACCATACAATGTCATGTACCATA  150

seq1  TAAATATAAATGTGAGAATAAAGTGTTCTTTTTTTTGCCTTATTACATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATAAATGTGAGAATAAAGTGTTCTTTTTTTTGCCTTATTACATAG  200

seq1  CTGATAGAATTTTGGAAACATATATGAAATGTATGGAATCATATATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGAATTTTGGAAACATATATGAAATGTATGGAATCATATATTTTA  250

seq1  AATATGTTTGGACATAAATATATGTAAATTAGTGAGTAGGAAAGAAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTTGGACATAAATATATGTAAATTAGTGAGTAGGAAAGAAATGA  300

seq1  ATCATCAACTTATTTTGTAAAGTATCTTCAAGGATATAATCAAGACATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAACTTATTTTGTAAAGTATCTTCAAGGATATAATCAAGACATTG  350

seq1  GAAGCTTGAGACTTGTTTATCATGGTATAAAGTAGCAGGTATTGAAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTGAGACTTGTTTATCATGGTATAAAGTAGCAGGTATTGAAGAGG  400

seq1  GTGAGATGGCACCATTTTGGTAGAAAGTTGGTTTATGTCTGTCAAGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATGGCACCATTTTGGTAGAAAGTTGGTTTATGTCTGTCAAGGAAT  450

seq1  CTTTATGTTGCAAGTCCATGAAAATTTGATTTTTCCAGCATTCAAAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTTGCAAGTCCATGAAAATTTGATTTTTCCAGCATTCAAAAATC  500

seq1  ATGAGTATCTTTCTTCTGAATGTTCTCCACCTGCAGTTTTAAAAAACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTATCTTTCTTCTGAATGTTCTCCACCTGCAGTTTTAAAAAACAGG  550

seq1  CTTAACTAACTGAAGATCCATAGTCATGTAAACAGTATTTCTATTTAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTAACTGAAGATCCATAGTCATGTAAACAGTATTTCTATTTAGTA  600

seq1  CCAGAGCAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAA  650

seq1  AGAAAAGAAAAGAAAAGAAGAAAAGAAAAGAAAAAGGGAAGGCTCACCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAAGAAAAGAAGAAAAGAAAAGAAAAAGGGAAGGCTCACCTT  700

seq1  TGCTTTAAGGTTGAGATAATTTTATGCAGTGGAGAGTTGATGAGAAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAAGGTTGAGATAATTTTATGCAGTGGAGAGTTGATGAGAAATAT  750

seq1  GATATATATTCAATTCAATCAAGTTTTTATAGTTTTTAGCATATATATAT  800
      ||||||||||||||||||||||||||||||||||||||||    ||||||
seq2  GATATATATTCAATTCAATCAAGTTTTTATAGTTTTTAGC----ATATAT  796

seq1  ATATATATATATATATATATGCTGCTTCATCTGAATATCATTCACAACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATGCTGCTTCATCTGAATATCATTCACAACTA  846

seq1  TGAATAGTACAGAGTTTTCCAACATGTTAGATCTATATTCCAGATTAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGTACAGAGTTTTCCAACATGTTAGATCTATATTCCAGATTAGAT  896

seq1  AGGATAAAGTTGTAAGTTGAAATAAAGTTTTTTCTAAGTATTTTACTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAAGTTGTAAGTTGAAATAAAGTTTTTTCTAAGTATTTTACTCTG  946

seq1  CAGTTCCTATGGTGCCTGGGCGATGAGCCCTATGCTTATTAGAAATTAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAGTTCCTATGGTGCCTGGGCGATGAGCCCTATGCTTATTAGAAATT-AG  995

seq1  ATATATTGAGAATGACTAATT--GCTCCA-TTTACTGGGTGGTTCTC-AA  1046
      |||||||||||||||||||||   ||||| |||||||||| |||||| ||
seq2  ATATATTGAGAATGACTAATTTGCCTCCATTTTACTGGGT-GTTCTCAAA  1044

seq1  TCAGTCATGAACACAG-AGTCAATGTTCTGTAAAACTGTAAAAAGACAAA  1095
      |||||||||||||||| |||||||| ||||||||  ||||||||||  ||
seq2  TCAGTCATGAACACAGAAGTCAATG-TCTGTAAACTTGTAAAAAGAACAA  1093

seq1  AATATGCCCTCAGAGTAG-CTAG-AAAGAATGTCACGTTTATCTACATTC  1143
      |||||||||||  ||||| |||| ||||||||||||||||||||||| | 
seq2  AATATGCCCTCGAAGTAGCCTAGAAAAGAATGTCACGTTTATCTACACTT  1143

seq1  CTTAAA  1149
      ||||||
seq2  CTTAAA  1149


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