BAC Information

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BAC

Clone NameB6Ng01-330E03
Chromosome14 (Build37)
Map Location 122,954,009 - 122,955,082
singlet/doubletsinglet
Overlap genePcca
Upstream geneDock9, LOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2, Tm9sf2, LOC621710, Clybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847
Downstream geneBC006662, 4930594M22Rik, Tmtc4, Vgcnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330E03.bB6Ng01-330E03.g
ACCGA116990GA116991
length1,0681,212
definitionB6Ng01-330E03.b B6Ng01-330E03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatccacatatggcatatgaaaatttcaaaatatatatgtatat
gtatatatatatacacacacatatatatgcatatatatgtgtatgtatgt
atatctatctatctatctatctatctatctatctatctatctatctatct
atctatcttctctgtgtggccctggctgtccagtaaatcgctctgtagat
caggctggcctggaactcagagatccacctgcctctgcctcctgagtgct
ttaaggattaaaggagtgcaccaccatccctggctaaaatatcattattt
ttagaagagtctgttggcatgctgctgcagtagaccagtgtgtggctaca
gtgttagagccactcagaatgccagctcctctgttgcatggatggagcag
taggtgctgctgttcaccccattgtgtttgtgacctagcagagatgtgag
aaatgccagctagctttcacacctaagatgtgtatttagagtttagggct
ggctgaagctaaatattcaggttttttggagaaaggactattatctttgt
tattaagtttgctgtgacactgaactttttgtagctgttccactgagggg
ccgtagaaggttggcattttcaattctttgaaaactcattttccatttat
ttaatttttttattagttcttttgaaagtctaaatggctgaatttttatc
taaacatagagggaatgggtagagcctcctgatacactacccttccccac
ccaaattataactttgactaggcaccaatgtcatggtggaagatgctgtt
gtttctatctttaaattaaaaaacaaacttttctagctctctgatcgtca
aagttagaagctggtaggactcactttccaatgtgtaggattgggggtaa
tacagaaggaaatggagtatgatcttggtatgtactgtggaaaaatatac
ttaatttcatttccactcagcaatctttctgcttccttaactcggctgcc
ttttcatgtctcccattccttgtttcaagatgaggatgcatttgcaatct
gtagcttttatgttttta
gaattcactactcaacccaggaaacaagcaaagcccttatacactatgaa
gacaaagtaaagaacaaacaatagtctactcaatcaacaaaaatcacagg
aattagttgattcctctcagtaaaattttaaatataaatggcctcacctc
accattaaaaagacacagagtggccaactagataactagatccagctttc
tgctgcttccaagacacttactttactgctaaaggctcctccaaagattg
tgagtcaacagatagaaagaattctattattgatgtaaaccaaaacaatg
tggcccagctattctgatacatgataagtagacttccgaccagaattagc
caaaggtgataaagaagctcatgctataccaataaaggaagtgatgagtc
aagaagatctacaactgtggatgcaccaaacatgggcccctgacctccca
agcaaacacaaacactagacaggtacttgtacaataggagttgctgactt
caatacctcactctcatctctaagtcatcaaaatattcaacaaagaatac
tcagatttaagtcacatcatagatcaaatgagcttaaacagacaaataca
gaatattccattcaatagaaacagaatacatattattctaggcagcccat
agaatcttctctaaacagactatattgccagcaacaaaccaagtcttaac
aaatgaatcatcttttctggcttataatatcagtgtgatgaaactagaaa
ctagtagtgagaaaatctacagaaaccatgaaaacacatgaagatagagc
atctaacccttgaatcactgaagaaatcagaaagaaatggtcaaagtttc
taaaagggaatgaaaacacaacttgggcagaacctttcaaatacagctaa
gaagcccagaaaatctcctcttgagtttgcaggtcagagttttcagtaag
tcttaggaaaaaatctcaaatacctaatgacataggatcaggacctagaa
gacagattcaaaccccaaagcagtatagttaaaaaatataaatatcaggt
aaattaataggatgagactaagagcatagatcatcaaacgagctgatttt
gaaaaaaatagatgaacaattcatgcattgacaaaatgggaaagaaagaa
cctatgatgaacaggtggactgtttcatcatctcttccctccctctctgg
aattccccccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_122954009_122955082
seq2: B6Ng01-330E03.b_50_1117

seq1  GAATTCAATCCACATATGGCATATGAAAATTTCAAAATATATATGTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCACATATGGCATATGAAAATTTCAAAATATATATGTATAT  50

seq1  GTATATATATATACACACACATATATATGCATATATATGTGTATGTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATATATACACACACATATATATGCATATATATGTGTATGTATGT  100

seq1  ATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT  150

seq1  ATCTATCTTCTCTGTGTGGCCCTGGCTGTCCAGTAAATCGCTCTGTAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTTCTCTGTGTGGCCCTGGCTGTCCAGTAAATCGCTCTGTAGAT  200

seq1  CAGGCTGGCCTGGAACTCAGAGATCCACCTGCCTCTGCCTCCTGAGTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCTGGAACTCAGAGATCCACCTGCCTCTGCCTCCTGAGTGCT  250

seq1  TTAAGGATTAAAGGAGTGCACCACCATCCCTGGCTAAAATATCATTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGATTAAAGGAGTGCACCACCATCCCTGGCTAAAATATCATTATTT  300

seq1  TTAGAAGAGTCTGTTGGCATGCTGCTGCAGTAGACCAGTGTGTGGCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGAGTCTGTTGGCATGCTGCTGCAGTAGACCAGTGTGTGGCTACA  350

seq1  GTGTTAGAGCCACTCAGAATGCCAGCTCCTCTGTTGCATGGATGGAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGAGCCACTCAGAATGCCAGCTCCTCTGTTGCATGGATGGAGCAG  400

seq1  TAGGTGCTGCTGTTCACCCCATTGTGTTTGTGACCTAGCAGAGATGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGCTGCTGTTCACCCCATTGTGTTTGTGACCTAGCAGAGATGTGAG  450

seq1  AAATGCCAGCTAGCTTTCACACCTAAGATGTGTATTTAGAGTTTAGGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAGCTAGCTTTCACACCTAAGATGTGTATTTAGAGTTTAGGGCT  500

seq1  GGCTGAAGCTAAATATTCAGGTTTTTTGGAGAAAGGACTATTATCTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAGCTAAATATTCAGGTTTTTTGGAGAAAGGACTATTATCTTTGT  550

seq1  TATTAAGTTTGCTGTGACACTGAACTTTTTGTAGCTGTTCCACTGAGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGTTTGCTGTGACACTGAACTTTTTGTAGCTGTTCCACTGAGGGG  600

seq1  CCGTAGAAGGTTGGCATTTTCAATTCTTTGAAAACTCATTTTCCATTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAGAAGGTTGGCATTTTCAATTCTTTGAAAACTCATTTTCCATTTAT  650

seq1  TTAATTTTTTTATTAGTTC-TTTGAAAGTCTAAATGGCTGAATTTTTATC  699
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTAATTTTTTTATTAGTTCTTTTGAAAGTCTAAATGGCTGAATTTTTATC  700

seq1  TAAACATAGAGGGAATGGGTAGAGCCTCCTGATACACTACCCTTCCCCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATAGAGGGAATGGGTAGAGCCTCCTGATACACTACCCTTCCCCAC  750

seq1  CCAAATTATAACTTTGACTAGGCACCAATGTCATGGTGGAAGATGCTGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTATAACTTTGACTAGGCACCAATGTCATGGTGGAAGATGCTGTT  800

seq1  GTTTCTATCTTTAAATTAAAAAACAAACTTTTCTAGCTCTCTGATCGTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTTTCTATCTTTAAATTAAAAAACAAACTTTTCTAGCTCTCTGATCGTC-  849

seq1  AAAGTTAGAAGCTGGTAGGACTCAACTTTCCAATGTGTAGGATTGGGGGT  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAGTTAGAAGCTGGTAGGACTC-ACTTTCCAATGTGTAGGATTGGGGGT  898

seq1  AATACAGAAGGGAAATGGAGTATGATCTTGGTATGTACTGTGGATATAAT  949
      ||||||||| |||||||||||||||||||||||||||||||||| | |||
seq2  AATACAGAA-GGAAATGGAGTATGATCTTGGTATGTACTGTGGA-AAAAT  946

seq1  ATACTTAATTTCATTTCCACTCAGTCAATCTTTTCTTGCTTCCTTTAACA  999
      |||||||||||||||||||||||| ||||||||   ||||||||| |   
seq2  ATACTTAATTTCATTTCCACTCAG-CAATCTTT--CTGCTTCCTTAACTC  993

seq1  AGCTGCCTTTTTCATGTCTCCTACT-CTTGTTTCAAGTAGAGAATGCATT  1048
       |||||| ||||||||||||| | | |||||||||||  ||| ||||| |
seq2  GGCTGCC-TTTTCATGTCTCCCATTCCTTGTTTCAAGATGAGGATGCA-T  1041

seq1  TTGCAGTCTG-AGGTTTTATGTTTTTA  1074
      ||||| |||| || |||||||||||||
seq2  TTGCAATCTGTAGCTTTTATGTTTTTA  1068