BAC Information

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BAC

Clone NameB6Ng01-331I01
Chromosome14 (Build37)
Map Location 42,703,914 - 42,705,037
singlet/doubletsinglet
Overlap geneLOC666233
Upstream geneSh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC100041930, EG666152
Downstream geneEG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331I01.bB6Ng01-331I01.g
ACCGA117849GA117850
length1,1951,057
definitionB6Ng01-331I01.b B6Ng01-331I01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
ttcttgaagtattagccagagcaattcgacaacaaaaggagatcgagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgatgtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaaaaacacccttctcaatagtcacaaataatataaactatcttggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattggaaggagcaatttgcaaattcatctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggtggaatca
ccatgccagacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatctttgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctgg
cacaactgggttgtatgtgtagagatgcgaatcgatccatactatctcct
tgtactaaggtcaaatctaagtgatcagaacttcacattaaaaccagaga
cacctgaaactatacaggagaagtggggaacgccttgagaatattggtca
caagggaaaaattccttgaccgacagcatgcttgggcgtaagatcggaat
ggcaattggaccttatggaaatctcaagttttcttcgccaagcca
gaattccagaacaaatttaaaagcatggtgttgtgctgggcatggtggtg
catgcctgtaatctcagcactcaggaggcagatgcaaggggatttctgca
ttcagttcaaggtaatcctggtctacaaagtgagctccaggacagccaga
gttatacagagaaaccctgtctcaaaaaaacaaagaaagaaagaaacacc
tggtgtagtagcataagaatactttaatctctgcacttgaatggcagcac
ttgcaggcagatatctgtgagattgaggccaatatggtcccatgagtccc
aaaacaggcagggcttgatagagagaccctatctcaaagaatgaataaat
ttaaaaataaaattctatacacacaatgaaaatgtgatatagttatgcaa
ggataacacaaaggatgtaaatcaaataaatgtaactcagcacaaaaata
gtctcaaaaattaatagttgaattgtcatttcagtacctgcagaaaatgc
attggacatgtccatcatcacctcatgataaaattcctgaagaaactagg
aataagagaaacatgcctcacctgaataaatcttctattcaacaaacata
gtcaacattatagtaatgggagagagaaaaagtctgtataaaataagaaa
caggaccagggtatacattctctctaccttattcaacataatacccgaga
ctttgaagcaatgagcaagtataaagaaacaagatagaaagagaaaataa
acatgtggatccctgcaaactctactttcattagggaagtgctcttggtg
aggtaagaagaaaagtaaggtcagttcaaattagtcagcaaaggctggtt
caaacttctggagcttgaagcctagtggatgaatttttacaaatctgaac
tcagtaaaactttggaaaatgtttccctgttgacaggtactacaagaaaa
ctttagttatgactaggtcagaagtcctctttacagttatgtgacttcaa
ccagcacccatgacccttttcacccaaatgagtgtcctgacagagaaagg
ccatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_42703914_42705037
seq2: B6Ng01-331I01.g_68_1124

seq1  GAATTCCAGAACAAATTTAAAAGCATGGTGTTGTGCTGGGCATGGTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACAAATTTAAAAGCATGGTGTTGTGCTGGGCATGGTGGTG  50

seq1  CATGCCTGTAATCTCAGCACTCAGGAGGCAGATGCAAGGGGATTTCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGTAATCTCAGCACTCAGGAGGCAGATGCAAGGGGATTTCTGCA  100

seq1  TTCAGTTCAAGGTAATCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCAAGGTAATCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGA  150

seq1  GTTATACAGAGAAACCCTGTCTCAAAAAAACAAAGAAAGAAAGAAACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACAGAGAAACCCTGTCTCAAAAAAACAAAGAAAGAAAGAAACACC  200

seq1  TGGTGTAGTAGCATAAGAATACTTTAATCTCTGCACTTGAATGGCAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTAGTAGCATAAGAATACTTTAATCTCTGCACTTGAATGGCAGCAC  250

seq1  TTGCAGGCAGATATCTGTGAGATTGAGGCCAATATGGTCCCATGAGTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGCAGATATCTGTGAGATTGAGGCCAATATGGTCCCATGAGTCCC  300

seq1  AAAACAGGCAGGGCTTGATAGAGAGACCCTATCTCAAAGAATGAATAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGCAGGGCTTGATAGAGAGACCCTATCTCAAAGAATGAATAAAT  350

seq1  TTAAAAATAAAATTCTATACACACAATGAAAATGTGATATAGTTATGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATAAAATTCTATACACACAATGAAAATGTGATATAGTTATGCAA  400

seq1  GGATAACACAAAGGATGTAAATCAAATAAATGTAACTCAGCACAAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACACAAAGGATGTAAATCAAATAAATGTAACTCAGCACAAAAATA  450

seq1  GTCTCAAAAATTAATAGTTGAATTGTCATTTCAGTACCTGCAGAAAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAAATTAATAGTTGAATTGTCATTTCAGTACCTGCAGAAAATGC  500

seq1  ATTGGACATGTCCATCATCACCTCATGATAAAATTCCTGAAGAAACTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACATGTCCATCATCACCTCATGATAAAATTCCTGAAGAAACTAGG  550

seq1  AATAAGAGAAACATGCCTCACCTGAATAAATCTTCTATTCAACAAACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAGAAACATGCCTCACCTGAATAAATCTTCTATTCAACAAACATA  600

seq1  GTCAACATTATAGTAATGGGAGAGAGAAAAAGTCTGTATAAAATAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACATTATAGTAATGGGAGAGAGAAAAAGTCTGTATAAAATAAGAAA  650

seq1  CAGGACCAGGGTATACATTCTCTCTACCTTATTCAACATAATACCCGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCAGGGTATACATTCTCTCTACCTTATTCAACATAATACCCGAGA  700

seq1  CTTTGAAGCAATGAGCAAGTATAAAGAAACAAGATAGAAAGAGAAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGCAATGAGCAAGTATAAAGAAACAAGATAGAAAGAGAAAATAA  750

seq1  ACATGTGGATCCCTGCAAACTCTACTTTCATTAGGGAAGTGCTCTTGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGATCCCTGCAAACTCTACTTTCATTAGGGAAGTGCTCTTGGTG  800

seq1  AGGTAAGAAGAAAAGTAAGGTCAGTTCAAATTAGTCAGC-AAGGCTGGTT  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGGTAAGAAGAAAAGTAAGGTCAGTTCAAATTAGTCAGCAAAGGCTGGTT  850

seq1  CAAACTTCTGGAGCTTGAAGCCTAGTGGATGAATTTTTACAAATCTGAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTCTGGAGCTTGAAGCCTAGTGGATGAATTTTTACAAATCTGAAC  900

seq1  TCAGTAAAACTTTGGAAAATGTTT-CCTGTTGACAGGTACTACAAGAAAA  948
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCAGTAAAACTTTGGAAAATGTTTCCCTGTTGACAGGTACTACAAGAAAA  950

seq1  CTTTAGTTATGACTAGGTCAGAAGTCCTCTTTACAG-TATGTGACTTCAA  997
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTTAGTTATGACTAGGTCAGAAGTCCTCTTTACAGTTATGTGACTTCAA  1000

seq1  CCAAGCACCCATGA-CCTTTTCACCCAAATGAGTTGTCCTGACAGAGAAA  1046
      || ||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  CC-AGCACCCATGACCCTTTTCACCCAAATGAG-TGTCCTGACAGAGAAA  1048

seq1  AGGCATGTGAGTTCTAGTAAGGAAGTCAAACTTACATTGAAGAAAGGATA  1096
       | ||||||                                         
seq2  GGCCATGTG-----------------------------------------  1057

seq1  CCCTTATCAAATGGTGCCTGGCCATGTG  1124
                                  
seq2  ----------------------------  1057