BAC Information

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BAC

Clone NameB6Ng01-332O09
Chromosome9 (Build37)14 (Build37)
Map Location 21,272,271 - 21,272,71818,207,314 - 18,208,450
singlet/doubletsingletsinglet
Overlap geneDnm2
Upstream geneZfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1
Downstream geneTmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332O09.bB6Ng01-332O09.g
ACCGA118868GA118869
length1,1471,117
definitionB6Ng01-332O09.b B6Ng01-332O09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,272,271 - 21,272,718)(18,207,314 - 18,208,450)
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggatgtggagcaagaggaacagtcctccattgttggtg
ggattgcaagcttgtacaaccactctgaaaatcattctggcggttcctca
gaaaattggacatagtactcccagacgaccgtgcaatacctctcctgggc
atatatccagaagatgttccaaccggtaagaaggacacatgctccactac
gttcatagcagccttattaataatagctagaagctggaaagaacccagat
gtcccttaacagaggaatggatacagaaaatttggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattactaggcaa
atggatggacctagaaggcatcatcctgagtgaggtaacccaatcacaaa
agaactcacacaatatgtacttactgataagtggatattagcccagaaac
ttagaatacccaagatataagatacaatttgctaaacacatgaaactcaa
gaagaaccaagatcaaagtatggccactttgccccttcttagaattggga
acaaaacacccatggaaggagttacagagacacagtttggagctgagaca
aaaggatggaccatctagagactgtcatttctggggatccatcccataat
catcctccaaacgctgacaccattgcatacactagcaagattttgctgaa
aggtccctgacatagctgtctcttgtgagactatgccggggcctagcaaa
cacagaagtggatgctcacagtcagctattggatggatcacagagccccc
aatggaggagctagagaaagtaaccaaggagctaaagggatctgcaaccc
tataggtagaactacatatgaagtaaccagtacccctgggctcttgactc
tagctgcatatgtatcagaggatggcctagtggccatcagtggaaagaga
ggcccattggacttgcaactttatatgcccagttacagggaatgctg
gaattccatgaaactaccaggaggtagggcctggttagtttaagtaagta
atttaggaagagctctgaaggcaatatctaccccagctctggtctatctc
tagacttcctgtgtgcaccatgaaaacaaggacccagccttcctgttctg
acactagagatagagcgacttctgcagccatgccttccctggccaatgaa
cagaagccctacgtgacctcaaaccagacaaactttcctctcttaagtag
ctacactcaggtatttggtgacagagatgagatgtgaaaagacacatcat
gcagaatgtaaagctgcattaggaaacctaacaaggtccgtgtgaaggtt
gggtgggattcagcaacttgattctctttttctagcatctattttcctat
ttgcatatgtgtgctgaacaaactatgatgagcaagccagtaagcagcac
ccttccctggcttctgcatcagctcctacttccaggtccttgccctgttt
gagttcctgtactgacttcctttatgataaacagcaatgtggaagtgtaa
gctgaccaaacccttttgtctccaacatgaccaaaaatggtcatggtatt
tcattgcagcaatagaaaccctaaaacaggtgttttgcttgaatgtatgt
ccatgcacttggagactggaaaaggacatctgataccattgggactgaag
taataggtggttgtcagccactacctgggtgctgagaatctaatgcagga
ttctgggagagcagccagtgcccttaactatggggccatctatctctcca
gcctcctgattgtccttttaatgataactgaagaagtcttttggattagg
ccatttttccataaacaatcattgttttatggacacttagtgcctgccag
ataagacgactagcaaagtaaccctgaaggtatccttgagttgccttgct
gtgacaggcacctgctagaactgacattgtttatcttgtcaattgagtct
gaaaatgtaatcatgatttacataatattttcagtattttctttttcatg
gatttctatttctttagttgtttttatctgttggggggttgagagttaag
gtgacaacatgggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_21272271_21272718
seq2: B6Ng01-332O09.b_935_1193 (reverse)

seq1  CAGCATTCCCTGTAACCACATCACTATAACCAACACTGTGACAGAGCCAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CGTCTTTTTTTTTTTCTTTTTTTTCCTTTTTTTTTTAATTAGGTATTTTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCC  150
                                                        
seq2  --------------------------------------------------  0

seq1  CACTACCCTCCCCACCCACTCCCACGTTTTGGCCCTGGCGTTCCCCTGCA  200
                                           || |||||    |
seq2  -----------------------------------CAGCATTCCCTGTAA  15

seq1  CTGAGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAATGATG  250
      ||| ||||||||||| ||||  |||||||||||||||||||||| |||||
seq2  CTG-GGCATATAAAG-TTGCAAGTCCAATGGGCCTCTCTTTCCACTGATG  63

seq1  GCCGACTAGGCCATCTTCTGATACATATGCAGCTAGAGTCAAGAGCTCCG  300
      ||| ||||||||||| |||||||||||||||||||||||||||||| | |
seq2  GCC-ACTAGGCCATCCTCTGATACATATGCAGCTAGAGTCAAGAGCCCAG  112

seq1  GGGTACTGGTTAGTTCATATTGTTGTTCCACCTGTAGGGTTGCAGTTCCC  350
      |||||||||||| |||||| ||| |||| |||| ||||||||||| ||||
seq2  GGGTACTGGTTACTTCATA-TGTAGTTCTACCTATAGGGTTGCAGATCCC  161

seq1  TTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCCTTGGGAGCCCTGTGAT  400
      ||||||||||||| ||||||||||||||||||| ||||| || |||||||
seq2  TTTAGCTCCTTGGTTACTTTCTCTAGCTCCTCCATTGGGGGCTCTGTGAT  211

seq1  CCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCC  448
      ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCC  259

seq1: chr14_18207314_18208450
seq2: B6Ng01-332O09.g_72_1188

seq1  GAATTCCATGAAACTACCAGGAGGTAGGGCCTGGTTAGTTTAAGTAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAAACTACCAGGAGGTAGGGCCTGGTTAGTTTAAGTAAGTA  50

seq1  ATTTAGGAAGAGCTCTGAAGGCAATATCTACCCCAGCTCTGGTCTATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGAAGAGCTCTGAAGGCAATATCTACCCCAGCTCTGGTCTATCTC  100

seq1  TAGACTTCCTGTGTGCACCATGAAAACAAGGACCCAGCCTTCCTGTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTCCTGTGTGCACCATGAAAACAAGGACCCAGCCTTCCTGTTCTG  150

seq1  ACACTAGAGATAGAGCGACTTCTGCAGCCATGCCTTCCCTGGCCAATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGAGATAGAGCGACTTCTGCAGCCATGCCTTCCCTGGCCAATGAA  200

seq1  CAGAAGCCCTACGTGACCTCAAACCAGACAAACTTTCCTCTCTTAAGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCCCTACGTGACCTCAAACCAGACAAACTTTCCTCTCTTAAGTAG  250

seq1  CTACACTCAGGTATTTGGTGACAGAGATGAGATGTGAAAAGACACATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTCAGGTATTTGGTGACAGAGATGAGATGTGAAAAGACACATCAT  300

seq1  GCAGAATGTAAAGCTGCATTAGGAAACCTAACAAGGTCCGTGTGAAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATGTAAAGCTGCATTAGGAAACCTAACAAGGTCCGTGTGAAGGTT  350

seq1  GGGTGGGATTCAGCAACTTGATTCTCTTTTTCTAGCATCTATTTTCCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGATTCAGCAACTTGATTCTCTTTTTCTAGCATCTATTTTCCTAT  400

seq1  TTGCATATGTGTGCTGAACAAACTATGATGAGCAAGCCAGTAAGCAGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATATGTGTGCTGAACAAACTATGATGAGCAAGCCAGTAAGCAGCAC  450

seq1  CCTTCCCTGGCTTCTGCATCAGCTCCTACTTCCAGGTCCTTGCCCTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTGGCTTCTGCATCAGCTCCTACTTCCAGGTCCTTGCCCTGTTT  500

seq1  GAGTTCCTGTACTGACTTCCTTTATGATAAACAGCAATGTGGAAGTGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCTGTACTGACTTCCTTTATGATAAACAGCAATGTGGAAGTGTAA  550

seq1  GCTGACCAAACCCTTTTGTCTCCAACATGACCAAAAATGGTCATGGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCAAACCCTTTTGTCTCCAACATGACCAAAAATGGTCATGGTATT  600

seq1  TCATTGCAGCAATAGAAACCCTAAAACAGGTGTTTTGCTTGAATGTATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCAGCAATAGAAACCCTAAAACAGGTGTTTTGCTTGAATGTATGT  650

seq1  CCATGCACTTGGAGACTGGAAAAGGACATCTGATACCATTGGGACTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCACTTGGAGACTGGAAAAGGACATCTGATACCATTGGGACTGAAG  700

seq1  TAATAGGTGGTTGTCAGCCACTACCTGGGTGCTGAGAATCTAATGCAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGTGGTTGTCAGCCACTACCTGGGTGCTGAGAATCTAATGCAGGA  750

seq1  TTCTGGGAGAGCAGCCAGTGCCCTTAACTATGGGGCCATCTATCTCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGAGAGCAGCCAGTGCCCTTAACTATGGGGCCATCTATCTCTCCA  800

seq1  GCCTCCTGATTGTCCTTTTAATGATAACTGAAGAAGTCTTTTGGATTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTGATTGTCCTTTTAATGATAACTGAAGAAGTCTTTTGGATTAGG  850

seq1  CCATTTTTCCATAAACAATCATTGTTTTATGGACACTTAGGTGCCTGCCA  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCATTTTTCCATAAACAATCATTGTTTTATGGACACTTA-GTGCCTGCCA  899

seq1  GATAAGACGACTAGCAAAGTAACCCTGAAGGTTATCCTTGAGTTGCCTTG  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GATAAGACGACTAGCAAAGTAACCCTGAAGG-TATCCTTGAGTTGCCTTG  948

seq1  CTGTGACAAGGCACCTGCTAAGAACTTGACATTGTATATC-TGTCAATTG  999
      ||||||| ||||||||||| ||||| ||||||||| |||| |||||||||
seq2  CTGTGAC-AGGCACCTGCT-AGAAC-TGACATTGTTTATCTTGTCAATTG  995

seq1  AGTCTGAAAATGTAAATCATTGATTTACATAATTAATTTTCAGTTATTTC  1049
      ||||||||||||| ||||| |||||||||||||  |||||||||  ||||
seq2  AGTCTGAAAATGT-AATCA-TGATTTACATAAT--ATTTTCAGTATTTTC  1041

seq1  TTTTTCATTGATATCTATTTCTTTAAGGTTTGTTTTTTATCTGTGTGGGG  1099
      |||||||| ||| ||||||||||||  |||   ||||||||||| |||||
seq2  TTTTTCATGGATTTCTATTTCTTTA--GTT--GTTTTTATCTGT-TGGGG  1086

seq1  GGTGGAAGAAGTAAAAAGGTGACCCAGACATGGGAAGA  1137
      ||| ||   |||   ||||||||    |||||||||||
seq2  GGTTGA--GAGT--TAAGGTGAC---AACATGGGAAGA  1117