BAC Information

Click to search

BAC

Clone NameB6Ng01-333M13
Chromosome14 (Build37)
Map Location 27,176,591 - 27,276,240
singlet/doubletdoublet
Overlap gene4933413J09Rik, Slmap
Upstream geneZmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538
Downstream geneLOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333M13.bB6Ng01-333M13.g
ACCGA119464GA119465
length1,176859
definitionB6Ng01-333M13.b B6Ng01-333M13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,275,052 - 27,276,240)(27,176,591 - 27,177,446)
sequence
gaattcaagtaatagactttaagtgtcatgtttgaaatgcttagacagac
tccgagaatgttgtcttatgtacgtaaaggtgcttttgtagacatagcac
atatgtatttgcctttttacttaaacagtagactttatctaaactagtct
actaaatagtttagggtcagattcagatattataaatagagtactcaggg
tactggagagatggctcagtggttcagagaattttctgccctgcaaggag
gacccaggtttgattcctataacccacatagcatctcacaaccagcagta
actctagctccaggggatccaccatccttttctgacctttgtggcttcct
gcatgcaaaactagaataaatgatccttagcttagtgagtaacagtgggt
gttgtggttactgttctgttgtgtgaagagacaccataaccaaagcaact
tacagaaaaaaacatttaattgggggcttacagtatcagagggtgagtgt
ctatcatcatgataggaagcagggcacaggtaggcagacactggtgctag
agaattatcagagagctcacatctgatctgcaagttgcaggccaagaaag
agtgagacagggcctggcttgggtttttaaaccccaaagtcaaccccccc
aatgacacacctccttcaacaaggccacacctcctaattttcccaaacag
ttctaccaactggggaccagacattcaaatatatcaccctatggaggcca
ttctcattcaaacctccccagtgattctctgcttttagtaagaattccag
gaattgataaatattggtttgaaatttggtttcatatctgtcataaagtc
ctttagttatgttcaagtttggtttaaaatgagttttaacaattttcggt
aagcatacataaagatttctgacattttcgtccatgtgtgctcttcctta
ccatccccctctactgactccttctctcccaaaggttcttctttgcttta
tatccagtaagtggatttaagctagattacatgcagagatgtatttatct
ttttcctcccacttatctttcttgttccctccccttttagaccactttcc
tcccgtcataatcctctattccccatcacatggtgttgataacatacata
ttagatttgcaaagaaaagaagcttg
gaattctagggaaacccttgataatgggcagtaggtgatcaggtgtgtgt
gtgggggggggtcttcaaatagcttgggggctggcctaactcctctcagc
acctgctccttcaaccagtgaactctggcctcctgaggctccggagcgga
gctgataggtcaggttcaggggccatgacccttctgaatctgatgcctta
gcctccagccagaaggcaggacagaggcagtgaatgctggcaggaagttg
tgttggctgaggtggtgagttcgcatagccttgggctctcagccaaattc
ctttagcagcaaatgcagtttgcaggacagcaagaagcctagaggcagag
tgggagtgcctttaggccagccatgcagccatccccagctccaccccctc
ctcctccacctcttccttcagactccttggggcagcagcccactgggcta
cacccgggaaggcaggatggagcctctaagagtcacccaaacgtttcagc
cccaggcctgctggccctggctggtgggccttcccgcctcacagctgccc
tcccccgaagacaccgcaaaggtaggaagaaaacagctaggttgttactg
gtatctctggagccatctgtcagcacttgagccccaccaaacgggacagg
gagagaagtagttgaagggccactctgaaaccacacagccgggagctgct
cgctcgtcctatggcagcagagtctggcccaggccatgatggaggtagat
accatgctcagatgcagagggagatctgtgtctaggcaaatggcaacagc
tggaaaaatataggggggcttacgggggaagctgctgcttcggtacacct
ggtcaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_27275052_27276240
seq2: B6Ng01-333M13.b_46_1221 (reverse)

seq1  CAAGCTTCTTTCATATGCAAAATCTAGATTTAAATGTATG-TATC-ACA-  47
      |||||||||||  | ||| |||||||     | ||||||| |||| ||| 
seq2  CAAGCTTCTTTTCTTTGC-AAATCTA-----ATATGTATGTTATCAACAC  44

seq1  CATGTGATGGGGGAAATAGGAAGGGATTATGGACGGGGAGGAAAGTGGTC  97
      ||||||||||||  |||||    ||||||| ||| |||||||||||||||
seq2  CATGTGATGGGG--AATAG---AGGATTAT-GAC-GGGAGGAAAGTGGTC  87

seq1  TAAAAGGGGAGAGAACAAGAAAGGATAGTGGGAGGAAAAAGATAAATACA  147
      ||||||||||| |||||||||||   ||||||||||||||||||||||||
seq2  TAAAAGGGGAGGGAACAAGAAAGATAAGTGGGAGGAAAAAGATAAATACA  137

seq1  TCTCTTGCATGTAATCTAGCTTAAATCCACTTACTGGATATAAAGCAAAG  197
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTC-TGCATGTAATCTAGCTTAAATCCACTTACTGGATATAAAGCAAAG  186

seq1  AAGAACCTTTGGGGAGAGAAGGAGTCAGTAGAGGGGGGATGGTAAGGAAG  247
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  AAGAACCTTT-GGGAGAGAAGGAGTCAGTAGA-GGGGGATGGTAAGGAAG  234

seq1  AGCACACATGGACGAAAATGTCAGAAATCTTTATGTATGCTTACCGAAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACATGGACGAAAATGTCAGAAATCTTTATGTATGCTTACCGAAAA  284

seq1  TTGTTAAAACTCATTTTAAACCAAACTTGAACATAACTAAAGGACTTTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAAACTCATTTTAAACCAAACTTGAACATAACTAAAGGACTTTAT  334

seq1  GACAGATATGAAACCAAATTTCAAACCAATATTTATCAATTCCTGGAATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATATGAAACCAAATTTCAAACCAATATTTATCAATTCCTGGAATT  384

seq1  CTTACTAAAAGCAGAGAATCACTGGGGAGGTTTGAATGAGAATGGCCTCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTAAAAGCAGAGAATCACTGGGGAGGTTTGAATGAGAATGGCCTCC  434

seq1  ATAGGGTGATATATTTGAATGTCTGGTCCCCAGTTGGTAGAACTGTTTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTGATATATTTGAATGTCTGGTCCCCAGTTGGTAGAACTGTTTGG  484

seq1  GAAAATTAGGAGGTGTGGCCTTGTTGAAGGAGGTGTGTCATTGGGGGGGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTAGGAGGTGTGGCCTTGTTGAAGGAGGTGTGTCATTGGGGGGGT  534

seq1  TGACTTTGGGGTTTAAAAACCCAAGCCAGGCCCTGTCTCACTCTTTCTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGGGGTTTAAAAACCCAAGCCAGGCCCTGTCTCACTCTTTCTTG  584

seq1  GCCTGCAACTTGCAGATCAGATGTGAGCTCTCTGATAATTCTCTAGCACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAACTTGCAGATCAGATGTGAGCTCTCTGATAATTCTCTAGCACC  634

seq1  AGTGTCTGCCTACCTGTGCCCTGCTTCCTATCATGATGATAGACACTCAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGCCTACCTGTGCCCTGCTTCCTATCATGATGATAGACACTCAC  684

seq1  CCTCTGATACTGTAAGCCCCCAATTAAATGTTTTTTTCTGTAAGTTGCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGATACTGTAAGCCCCCAATTAAATGTTTTTTTCTGTAAGTTGCTT  734

seq1  TGGTTATGGTGTCTCTTCACACAACAGAACAGTAACCACAACACCCACTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATGGTGTCTCTTCACACAACAGAACAGTAACCACAACACCCACTG  784

seq1  TTACTCACTAAGCTAAGGATCATTTATTCTAGTTTTGCATGCAGGAAGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCACTAAGCTAAGGATCATTTATTCTAGTTTTGCATGCAGGAAGCC  834

seq1  ACAAAGGTCAGAAAAGGATGGTGGATCCCCTGGAGCTAGAGTTACTGCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTCAGAAAAGGATGGTGGATCCCCTGGAGCTAGAGTTACTGCTG  884

seq1  GTTGTGAGATGCTATGTGGGTTATAGGAATCAAACCTGGGTCCTCCTTGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAGATGCTATGTGGGTTATAGGAATCAAACCTGGGTCCTCCTTGC  934

seq1  AGGGCAGAAAATTCTCTGAACCACTGAGCCATCTCTCCAGTACCCTGAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGAAAATTCTCTGAACCACTGAGCCATCTCTCCAGTACCCTGAGT  984

seq1  ACTCTATTTATAATATCTGAATCTGACCCTAAACTATTTAGTAGACTAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATTTATAATATCTGAATCTGACCCTAAACTATTTAGTAGACTAGT  1034

seq1  TTAGATAAAGTCTACTGTTTAAGTAAAAAGGCAAATACATATGTGCTATG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATAAAGTCTACTGTTTAAGTAAAAAGGCAAATACATATGTGCTATG  1084

seq1  TCTACAAAAGCACCTTTACGTACATAAGACAACATTCTCGGAGTCTGTCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAAGCACCTTTACGTACATAAGACAACATTCTCGGAGTCTGTCT  1134

seq1  AAGCATTTCAAACATGACACTTAAAGTCTATTACTTGAATTC  1189
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTCAAACATGACACTTAAAGTCTATTACTTGAATTC  1176

seq1: chr14_27176591_27177446
seq2: B6Ng01-333M13.g_66_924

seq1  GAATTCTAGGGAAACCCTTGATAATGGGCAGTAGGTGATCAGGTGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGGAAACCCTTGATAATGGGCAGTAGGTGATCAGGTGTGTGT  50

seq1  GTGGGGGGGGGTCTTCAAATAGCTTGGGGGCTGGCCTAACTCCTCTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGGGGGTCTTCAAATAGCTTGGGGGCTGGCCTAACTCCTCTCAGC  100

seq1  ACCTGCTCCTTCAACCAGTGAACTCTGGCCTCCTGAGGCTCCGGAGCGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTCCTTCAACCAGTGAACTCTGGCCTCCTGAGGCTCCGGAGCGGA  150

seq1  GCTGATAGGTCAGGTTCAGGGGCCATGACCCTTCTGAATCTGATGCCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATAGGTCAGGTTCAGGGGCCATGACCCTTCTGAATCTGATGCCTTA  200

seq1  GCCTCCAGCCAGAAGGCAGGACAGAGGCAGTGAATGCTGGCAGGAAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAGCCAGAAGGCAGGACAGAGGCAGTGAATGCTGGCAGGAAGTTG  250

seq1  TGTTGGCTGAGGTGGTGAGTTCGCATAGCCTTGGGCTCTCAGCCAAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCTGAGGTGGTGAGTTCGCATAGCCTTGGGCTCTCAGCCAAATTC  300

seq1  CTTTAGCAGCAAATGCAGTTTGCAGGACAGCAAGAAGCCTAGAGGCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCAGCAAATGCAGTTTGCAGGACAGCAAGAAGCCTAGAGGCAGAG  350

seq1  TGGGAGTGCCTTTAGGCCAGCCATGCAGCCATCCCCAGCTCCACCCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTGCCTTTAGGCCAGCCATGCAGCCATCCCCAGCTCCACCCCCTC  400

seq1  CTCCTCCACCTCTTCCTTCAGACTCCTTGGGGCAGCAGCCCACTGGGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCACCTCTTCCTTCAGACTCCTTGGGGCAGCAGCCCACTGGGCTA  450

seq1  CACCCGGGAAGGCAGGATGGAGCCTCTAAGAGTCACCCAAACGTTTCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCGGGAAGGCAGGATGGAGCCTCTAAGAGTCACCCAAACGTTTCAGC  500

seq1  CCCAGGCCTGCTGGCCCTGGCTGGTGGGCCTTCCCGCCTCACAGCTGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCCTGCTGGCCCTGGCTGGTGGGCCTTCCCGCCTCACAGCTGCCC  550

seq1  TCCCCCGAAGACACCGCAAAGGTAGGAAGAAAACAGCTAGGTTGTTACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCGAAGACACCGCAAAGGTAGGAAGAAAACAGCTAGGTTGTTACTG  600

seq1  GTATCTCTGGAGCCATCTGTCAGCAC-TGAGCCCCACCAAACGGGACAGG  649
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTATCTCTGGAGCCATCTGTCAGCACTTGAGCCCCACCAAACGGGACAGG  650

seq1  GAGAGAAGTAGTTGAA-GGCCACTCTGAAACCACACAGCCGGGAGCTGCT  698
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAGAGAAGTAGTTGAAGGGCCACTCTGAAACCACACAGCCGGGAGCTGCT  700

seq1  CGCTCGTCCTATGGCAGCAGAGTCTGGCCCAGGCCATGATGGAGGTAGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CGCTCGTCCTATGGCAGCAGAGTCTGGCCCAGGCCATGATGGAGGTAGAT  750

seq1  ACCATGCTCAGATGCAGAGGGAGAGCTGTGCCTAGGCAAATGGCAACAGC  798
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  ACCATGCTCAGATGCAGAGGGAGATCTGTGTCTAGGCAAATGGCAACAGC  800

seq1  TGG-AGAAGACAGGGGGGCTCAC-GGGGAAGCTGCTGCTTCAGGTACACC  846
      ||| | || | ||||||||| || ||||||||||||||||| ||||||||
seq2  TGGAAAAATATAGGGGGGCTTACGGGGGAAGCTGCTGCTTC-GGTACACC  849

seq1  TGGCCAAGGA  856
      ||| ||||||
seq2  TGGTCAAGGA  859