BAC Information

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BAC

Clone NameB6Ng01-334A11
Chromosome14 (Build37)
Map Location 36,979,196 - 36,980,392
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid1, 4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
Downstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334A11.bB6Ng01-334A11.g
ACCGA119637GA119638
length4081,178
definitionB6Ng01-334A11.b B6Ng01-334A11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tcaactgaggaataccgaatggctgagaagcacctgaaaaaatgttcaaa
atccttaatcatcagggaaatgtaaatcaaaacaaccttgagattccacc
tcacaccagtcagaatggctaagatcaaaaattcaagtgacagcaaatgc
tggccagggtgtggagaaagaggaacactcctccattgttggtgggattg
caagcttgtacgaccactctggaagtcagtctggaggtttctcagaaaat
tggacataatactactggatgatccagcaatatctctcctgggcatatac
ccagaagaaattccaactggcaataagaatgcatgccccaactttatatg
cctcagtacaggggaacgccagggccaagaagtgggagtgggtgggtagg
tgagtggg

gaattctcttctaaatgtagactctgttacaggctcactgggaatcaagg
tcaagttgctttactacacttggtcttgtgaactcagatggaaaattggg
ttagaacagatcacaggatagaaaatggctgccctttcctggcttatgta
tgaagcctctgaggacagatagttagggcatatgggtagagagagatgtg
gaaggagacagaccactaggaagttagagtttttactaccttagcagcac
tatactgtgaagatatctccttttccccacccaaagtccttgcctcctct
cagactcacagtggataattttgcccaaactttggtggggacatttctgg
gatttaggagcactgagtggatattatgagaataagtagaatgttaggga
tgaatgtcacccaatgtgttccatgccaatgaaaatgaaaaggggagttg
cttttaatctgtcctctgactcactgtcaacttgaagcattggttccatt
gctcctaaggaaacagttctaggcattcctagttaactcttctaggatta
agctctgtggttctcagtgtctgacagtcagttgtgtgctttggctgtga
ctcggtaccttttcactacatgtttgtccaaatatgtttcagcagcccaa
atctgagaagactagctatcaacacttcctatacaagacaaacgcaggat
tggatctttcctaagctgaatttatccaatgcctttatgtgaagatagtg
atgaaagagcccacgttaggtgtgcctgcgctccacatctccagtcaagc
ataaccacggaaaagagaaataaattgatgttctccacctgccgtataaa
atgaaaattttctgccagatacctagagctagacaggaagccattgatca
acctgaataaacatcctttaataaatctttatctctccacaagataattg
ggaggacagtggcttcctagtttactccgtttcaggaatgccctcccttt
cactcatatacgtattatttgctttcagagccaaaatgttctacatggcc
ccatcatcagtgacgagacaaaagatttgctatttcagtcaatgtgtcaa
gctttagaattctctctaattcacttgcttgtaggtgctggcattccatt
aagtgccaagttggttgcgtactccttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_36979196_36980392
seq2: B6Ng01-334A11.g_67_1244

seq1  GAATTCTCTTCTAAATGTAGACTCTGTTACAGGCTCACTGGGAATCAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCTAAATGTAGACTCTGTTACAGGCTCACTGGGAATCAAGG  50

seq1  TCAAGTTGCTTTACTACACTTGGTCTTGTGAACTCAGATGGAAAATTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTGCTTTACTACACTTGGTCTTGTGAACTCAGATGGAAAATTGGG  100

seq1  TTAGAACAGATCACAGGATAGAAAATGGCTGCCCTTTCCTGGCTTATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACAGATCACAGGATAGAAAATGGCTGCCCTTTCCTGGCTTATGTA  150

seq1  TGAAGCCTCTGAGGACAGATAGTTAGGGCATATGGGTAGAGAGAGATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCTCTGAGGACAGATAGTTAGGGCATATGGGTAGAGAGAGATGTG  200

seq1  GAAGGAGACAGACCACTAGGAAGTTAGAGTTTTTACTACCTTAGCAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGACAGACCACTAGGAAGTTAGAGTTTTTACTACCTTAGCAGCAC  250

seq1  TATACTGTGAAGATATCTCCTTTTCCCCACCCAAAGTCCTTGCCTCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGTGAAGATATCTCCTTTTCCCCACCCAAAGTCCTTGCCTCCTCT  300

seq1  CAGACTCACAGTGGATAATTTTGCCCAAACTTTGGTGGGGACATTTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCACAGTGGATAATTTTGCCCAAACTTTGGTGGGGACATTTCTGG  350

seq1  GATTTAGGAGCACTGAGTGGATATTATGAGAATAAGTAGAATGTTAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGGAGCACTGAGTGGATATTATGAGAATAAGTAGAATGTTAGGGA  400

seq1  TGAATGTCACCCAATGTGTTCCATGCCAATGAAAATGAAAAGGGGAGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTCACCCAATGTGTTCCATGCCAATGAAAATGAAAAGGGGAGTTG  450

seq1  CTTTTAATCTGTCCTCTGACTCACTGTCAACTTGAAGCATTGGTTCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATCTGTCCTCTGACTCACTGTCAACTTGAAGCATTGGTTCCATT  500

seq1  GCTCCTAAGGAAACAGTTCTAGGCATTCCTAGTTAACTCTTCTAGGATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTAAGGAAACAGTTCTAGGCATTCCTAGTTAACTCTTCTAGGATTA  550

seq1  AGCTCTGTGGTTCTCAGTGTCTGACAGTCAGTTGTGTGCTTTGGCTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTGGTTCTCAGTGTCTGACAGTCAGTTGTGTGCTTTGGCTGTGA  600

seq1  CTCGGTACCTTTTCACTACATGTTTGTCCAAATATGTTTCAGCAGCCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTACCTTTTCACTACATGTTTGTCCAAATATGTTTCAGCAGCCCAA  650

seq1  ATCTGAGAAGACTAGCTATCAACACTTCCTATACAAGACAAACGCAGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGAAGACTAGCTATCAACACTTCCTATACAAGACAAACGCAGGAT  700

seq1  TGGATCTTTCCTAAGCTGAATTTATCCAATGCCTTTATGTGAAGATAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTTTCCTAAGCTGAATTTATCCAATGCCTTTATGTGAAGATAGTG  750

seq1  ATGAAAGAGCCCACGTTAGGTGTGCCTGCGCTCCACATCTCCAGTCAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAGCCCACGTTAGGTGTGCCTGCGCTCCACATCTCCAGTCAAGC  800

seq1  ATAACCACGGAAAAGAGAAATAAATTGATGTTCTCCACCTGCCGTATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCACGGAAAAGAGAAATAAATTGATGTTCTCCACCTGCCGTATAAA  850

seq1  ATGAAAATTTTCTGCCAGATACCTAGAGCTAGACAGGAAGCCATTGATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATTTTCTGCCAGATACCTAGAGCTAGACAGGAAGCCATTGATCA  900

seq1  ACCTGAATAAACATCCTTTAATAAATCTTTATCTCTCCACAAGATAATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAATAAACATCCTTTAATAAATCTTTATCTCTCCACAAGATAATTG  950

seq1  GGAGGACAGTGGCTTCCTAGTTTACTCCGTTTCAGGAATGCCCTCCCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACAGTGGCTTCCTAGTTTACTCCGTTTCAGGAATGCCCTCCCTTT  1000

seq1  CACTCATATACGTA-TATTTGCTTTCAGAGCCAAAATGTTCTACATGGCC  1049
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACTCATATACGTATTATTTGCTTTCAGAGCCAAAATGTTCTACATGGCC  1050

seq1  CCATCCATCAAGGTGACGGAGGACCAAAAGATTTGCTATTTCAGTTCCAA  1099
      |||| |||||  ||||| |||   |||||||||||||||||||||  |||
seq2  CCAT-CATCA--GTGAC-GAG--ACAAAAGATTTGCTATTTCAGT--CAA  1092

seq1  TGTGTCAAGCTTTTAAGAATTCTCT-TAATCCACTGGCTTTGTAAGGTGC  1148
      |||||||||||||  |||||||||| |||| |||| || |||| ||||| 
seq2  TGTGTCAAGCTTT--AGAATTCTCTCTAATTCACTTGC-TTGT-AGGTG-  1137

seq1  CTGGCATTTTCCATTATAGGTGGGCCATGTTGTGTTGCTGTACTCCTTG  1197
      ||||||  ||||||||     | |||| |||| ||||| ||||||||||
seq2  CTGGCA--TTCCATTA----AGTGCCAAGTTG-GTTGC-GTACTCCTTG  1178


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