BAC Information

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BAC

Clone NameB6Ng01-336E01
Chromosome14 (Build37)
Map Location 97,868,173 - 98,013,027
singlet/doubletdoublet
Overlap genenone
Upstream geneKlhl1, LOC100043366, LOC668654
Downstream geneEG668659, Dach1, LOC635593
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336E01.bB6Ng01-336E01.g
ACCGA121229GA121230
length999960
definitionB6Ng01-336E01.b B6Ng01-336E01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,868,173 - 97,868,816)(98,012,043 - 98,013,027)
sequence
gaattcctttgtttgaattttattatgcagaattttttctgaagcttctt
acccagaaacccaacttcgaaagcattcccccaaattttaacatatggtt
accccaaacataaaggattataaaacctattataacctttcaacagaaat
cacactccttaaatcatggtagatgtggttgcctgcaaaagacctggaca
agatcaagtcatttggcatttcaggatggatatgggatgggcacaggagc
atgtccacttgctgaggaataattggcaaaagatggtttctgagagagga
ttattcaattgttttgaaagtatactgttgtagataagcctgggaaaaaa
ttatatttgatgttaattccgttctcctgtgagtggctgcgaaaaagagt
caagtgaataagtcagcactcaggtgatttcctgtaaacttgtttcccac
cttaatttgtaaaataaaggagagctgatgattgggcagataaaaaggaa
aggtggagaggaaggtgatgaaagaagaaggagaaaatggaagagggaga
ggacgcagaggaggaggaagaagaaaagcggagcagaagcacatggcctg
gagaaagtacaagttctaaggggtctcatagaggtggaagatcatagtat
agtggtagatctacccaatctaggcacacagaatacattcataataactg
agttgtgttttcattgccagggcatatttgggagaagatttatcataaca
gtatatccccttgtagattgaacatgctctgtgaatggcttcagaaaatg
tgatttaagatggaaataattttagacttagtgagttataattatttttt
ttaaggaagaggatatgaagttgccaggggggcatggttggagattcagg
agtagttggaataggaggatgtgagcaagtcatattatttatatataaat
ttataaaaataaattatgtgccaaagtgaaaaagtgtggattttagttt

gaattccggcatctttttttgtcatgtgaagaatgaacatcaaccttcaa
aagttaggctgtgaattgtttgggcaaaatactaattgttaccagcatgg
gcaggtaataatcacgtagcattttaatttccagtcgaaacctaggcact
ttcatgtgccaagcaattcaaattcccttcactgtcaacagaatctgtga
gctggtaagaacatctattgtgtacttcaaaagcgaataaagaatatggc
acaaagttttgctgctagtttgtgtatttctcctgtttgtgatattgtca
aaataaattcttctttagctgttgattctattgatttgtttatcgatcat
aattttttaaagaaatgcttcagaacttttatatttactttattaatttt
cctaaaactttctagtaatggaaacctaaggaaaaattgtttatcttaac
agtttgaaaaaatatatttcaacatcatcaggaaggtttagtggtgaaag
tgtcaggaaatgggacacattccatctgcagtcaatggacatagggaaaa
tgttgatgttcactttgctttcttgttccttttcgttttatccagtttag
gacctcaacccctgggatggaactactcagattcccagagagtcttttct
ccttagttaaatttctctggcagttttctcacagacatctccagaggtat
gttccttaagtgactcaaaatctactcaagttgatagtgaaaactaactg
tcataagtccattatttgtaaattatagaatgtccatactttaaatcaaa
atacacactgctgacttcttatgtcttttgtccatcccataatgaaaata
tatttagtccatctcttggattaaccaaaatcacaatcacaacatcccaa
taatgtcaaagttgaaaggaagtcttttatgtgtgtgtgtgtgtgtgtgt
gtgtggtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_97868173_97868816
seq2: B6Ng01-336E01.b_43_686

seq1  GAATTCCTTTGTTTGAATTTTATTATGCAGAATTTTTTCTGAAGCTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGTTTGAATTTTATTATGCAGAATTTTTTCTGAAGCTTCTT  50

seq1  ACCCAGAAACCCAACTTCGAAAGCATTCCCCCAAATTTTAACATATGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAAACCCAACTTCGAAAGCATTCCCCCAAATTTTAACATATGGTT  100

seq1  ACCCCAAACATAAAGGATTATAAAACCTATTATAACCTTTCAACAGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAACATAAAGGATTATAAAACCTATTATAACCTTTCAACAGAAAT  150

seq1  CACACTCCTTAAATCATGGTAGATGTGGTTGCCTGCAAAAGACCTGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCCTTAAATCATGGTAGATGTGGTTGCCTGCAAAAGACCTGGACA  200

seq1  AGATCAAGTCATTTGGCATTTCAGGATGGATATGGGATGGGCACAGGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAGTCATTTGGCATTTCAGGATGGATATGGGATGGGCACAGGAGC  250

seq1  ATGTCCACTTGCTGAGGAATAATTGGCAAAAGATGGTTTCTGAGAGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCACTTGCTGAGGAATAATTGGCAAAAGATGGTTTCTGAGAGAGGA  300

seq1  TTATTCAATTGTTTTGAAAGTATACTGTTGTAGATAAGCCTGGGAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAATTGTTTTGAAAGTATACTGTTGTAGATAAGCCTGGGAAAAAA  350

seq1  TTATATTTGATGTTAATTCCGTTCTCCTGTGAGTGGCTGCGAAAAAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTGATGTTAATTCCGTTCTCCTGTGAGTGGCTGCGAAAAAGAGT  400

seq1  CAAGTGAATAAGTCAGCACTCAGGTGATTTCCTGTAAACTTGTTTCCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAATAAGTCAGCACTCAGGTGATTTCCTGTAAACTTGTTTCCCAC  450

seq1  CTTAATTTGTAAAATAAAGGAGAGCTGATGATTGGGCAGATAAAAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTGTAAAATAAAGGAGAGCTGATGATTGGGCAGATAAAAAGGAA  500

seq1  AGGTGGAGAGGAAGGTGATGAAAGAAGAAGGAGAAAATGGAAGAGGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAGAGGAAGGTGATGAAAGAAGAAGGAGAAAATGGAAGAGGGAGA  550

seq1  GGACGCAGAGGAGGAGGAAGAAGAAAAGCGGAGCAGAAGCACATGGCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCAGAGGAGGAGGAAGAAGAAAAGCGGAGCAGAAGCACATGGCCTG  600

seq1  GAGAAAGTACAAGTTCTAAGGGGTCTCATAGAGGTGGAAGATCA  644
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTACAAGTTCTAAGGGGTCTCATAGAGGTGGAAGATCA  644


seq1: chr14_98012043_98013027
seq2: B6Ng01-336E01.g_68_1027 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACACACACACA  50
                              ||||| ||||||||||||||||||||
seq2  ------------------------CACAC-CACACACACACACACACACA  25

seq1  CACACATAAAAGACTTCCTTTCAACTTTGACATTATTGGGATGTTGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAAAAGACTTCCTTTCAACTTTGACATTATTGGGATGTTGTGAT  75

seq1  TGTGATTTTGGTTAATCCAAGAGATGGACTAAATATATTTTCATTATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTTGGTTAATCCAAGAGATGGACTAAATATATTTTCATTATGGG  125

seq1  ATGGACAAAAGACATAAGAAGTCAGCAGTGTGTATTTTGATTTAAAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAAAAGACATAAGAAGTCAGCAGTGTGTATTTTGATTTAAAGTAT  175

seq1  GGACATTCTATAATTTACAAATAATGGACTTATGACAGTTAGTTTTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTCTATAATTTACAAATAATGGACTTATGACAGTTAGTTTTCACT  225

seq1  ATCAACTTGAGTAGATTTTGAGTCACTTAAGGAACATACCTCTGGAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTTGAGTAGATTTTGAGTCACTTAAGGAACATACCTCTGGAGATG  275

seq1  TCTGTGAGAAAACTGCCAGAGAAATTTAACTAAGGAGAAAAGACTCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAGAAAACTGCCAGAGAAATTTAACTAAGGAGAAAAGACTCTCTG  325

seq1  GGAATCTGAGTAGTTCCATCCCAGGGGTTGAGGTCCTAAACTGGATAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTGAGTAGTTCCATCCCAGGGGTTGAGGTCCTAAACTGGATAAAA  375

seq1  CGAAAAGGAACAAGAAAGCAAAGTGAACATCAACATTTTCCCTATGTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAGGAACAAGAAAGCAAAGTGAACATCAACATTTTCCCTATGTCCA  425

seq1  TTGACTGCAGATGGAATGTGTCCCATTTCCTGACACTTTCACCACTAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGCAGATGGAATGTGTCCCATTTCCTGACACTTTCACCACTAAAC  475

seq1  CTTCCTGATGATGTTGAAATATATTTTTTCAAACTGTTAAGATAAACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGATGATGTTGAAATATATTTTTTCAAACTGTTAAGATAAACAAT  525

seq1  TTTTCCTTAGGTTTCCATTACTAGAAAGTTTTAGGAAAATTAATAAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTAGGTTTCCATTACTAGAAAGTTTTAGGAAAATTAATAAAGTA  575

seq1  AATATAAAAGTTCTGAAGCATTTCTTTAAAAAATTATGATCGATAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAAGTTCTGAAGCATTTCTTTAAAAAATTATGATCGATAAACAA  625

seq1  ATCAATAGAATCAACAGCTAAAGAAGAATTTATTTTGACAATATCACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAGAATCAACAGCTAAAGAAGAATTTATTTTGACAATATCACAAA  675

seq1  CAGGAGAAATACACAAACTAGCAGCAAAACTTTGTGCCATATTCTTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAAATACACAAACTAGCAGCAAAACTTTGTGCCATATTCTTTATT  725

seq1  CGCTTTTGAAGTACACAATAGATGTTCTTACCAGCTCACAGATTCTGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTTGAAGTACACAATAGATGTTCTTACCAGCTCACAGATTCTGTTG  775

seq1  ACAGTGAAGGGAATTTGAATTGCTTGGCACATGAAAGTGCCTAGGTTTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAAGGGAATTTGAATTGCTTGGCACATGAAAGTGCCTAGGTTTCG  825

seq1  ACTGGAAATTAAAATGCTACGTGATTATTACCTGCCCATGCTGGTAACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAATTAAAATGCTACGTGATTATTACCTGCCCATGCTGGTAACAA  875

seq1  TTAGTATTTTGCCCAAACAATTCACAGCCTAACTTTTGAAGGTTGATGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATTTTGCCCAAACAATTCACAGCCTAACTTTTGAAGGTTGATGTT  925

seq1  CATTCTTCACATGACAAAAAAAGATGCCGGAATTC  985
      |||||||||||||||||||||||||||||||||||
seq2  CATTCTTCACATGACAAAAAAAGATGCCGGAATTC  960


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