BAC Information

Click to search

BAC

Clone NameB6Ng01-338J19
Chromosome14 (Build37)
Map Location 27,317,983 - 27,453,032
singlet/doubletdoublet
Overlap geneSlmap, LOC100039353, LOC665279, A630054L15Rik
Upstream geneZmiz1, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik
Downstream geneArf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370, Erc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338J19.bB6Ng01-338J19.g
ACCGA122855GA122856
length1,1091,159
definitionB6Ng01-338J19.b B6Ng01-338J19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,451,946 - 27,453,032)(27,317,983 - 27,319,140)
sequence
gaattctctctccagcacctggctctttctaatagcatctaactttatag
cccagagcttgaactcaagttcctcttgcttcagcttctcagttgctgga
ttacacacctatctctaaccaatccttctttttttttttttttttggttt
tttcgagacagggtttctctgtatagccctggctgtcctggaactcactt
tgtagaccaggctggcctccaactcagaaatccgcctgcctctgcttccc
gagtgctaggattaaaggcatgcgacaccacgcccggctaaccaatcatt
cttaatgacatccctttgcttacaaatgttgtatatatagtccttttggg
tttaatgctgtaggtatttctacacttcaagctcatttaaaaaataactg
gggacagtggtacatgtctgaagttgtactactctggagtctgggatagg
aggattgtgagttcaagactacacttggctacttagcaaaaaccaaaagg
gaactgcatatttcttaacattcaaacatttgagaggatatattctatag
tactaatatctagcagtgataagtggttatgaaggattacaaagacagac
attgcactgaacatacagtattccattgaatcctcttactttgcctagtg
gtaacttgcctactgtgcatgaggctctctgatcaaattcaagtattgca
aataaataaaacttaatctcaatgtaacatatatcactcactgttcagag
actacaggcgacatggtctactaattgctgtacaaacagtggaatttttg
cccttgctttccctttggctttgtaaactgtaatcactaaatctcatttt
tcttacgttactttcattacttcatctttctgaaaaagctacattcttct
gaacattacttattcctcaggtagtagaaaagtatcctctgcctcagtgt
agaagtcttacccacctaactttttctcttgtaggcatcaagtggtggaa
tttttagagtctttagctaggtcaggtcagtgagaaactctgtcttaaaa
aaaacaaaccaaaccacaaagctatgggtttcctgatgaacaggcaactc
aaagttgat
gaattcctctgttgccgggtgtggtggcgcacacctttaatcccagcact
cgggaggcagaggcaggtggatttctgagttcgaggccaacctggtctac
aaagtgagttccaggacagccagggctatacagagaaatcctgtctcgaa
aaaccaaaaaaaaaaaaaaaaaatcttggcaaattactatttgggctaaa
aaaatataaattccttacatgattcaagggcaaaggctcctgattttctg
ctaccacatgatttggacattcagataaagacatccctcatggcacccac
ttctcagaataagtaatactccagtcagcaatcactggctggcttacatt
cttgagctgaaagtcagtaacagtattatgttcattttctacctgcactt
acagcctaggcacacgtcctaaacatttcccctagtaaaattttgagacc
caagttggagaagttgtgcaattttctcttaactatttccactcatttgt
ttgttttgagataggtctcactacagaacctgtggttgaccttaaacata
cagagatttacctgtttctgcctcctgaatgttcaaataaaatgtactca
cctccatgaaaatttttttgatttctggtccagtaggctggatcagcatg
ttaaaggtacttgccctcaagcctgaaaccagagtttgctccctgggaca
cacacagtagggaaaaaagccgccatatgagctatgtacaggtacatgta
cacacacacacacacacacacacacacataaactcaaagaataaattgat
ttcatttcacttccatgagaagcaacaccatttattcccagaattcagct
atatcgagttttatatgcagagagtaaaggcaaacaaggaattcattact
catcaatgacaaaataattcacaatcatcacagtcactatgtgcttagac
gaagctattcttgcatgcattttttctcacagaaggcacttgttacatta
tcttcacaagaacaaaataagtaattgagattgaacagataggtaacttg
ctaaaggtgttccaaactagtcatggaggaagaagtgcattttaacatta
atgtttattgttggttttggagaccaattgtacacagtgcaagctgtacc
tcagcttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_27451946_27453032
seq2: B6Ng01-338J19.b_47_1155 (reverse)

seq1  ATCAACTTTGAGT--GCTGTTCCTCAGGAA--CCATACTTTGGTGTTTTG  46
      |||||||||||||   |||||| |||||||  |||||  || ||| ||||
seq2  ATCAACTTTGAGTTGCCTGTTCATCAGGAAACCCATAGCTTTGTGGTTTG  50

seq1  GTTTG-TTTTTTTGAGACAGAGTTTCTCACTGACCTG-GCTAGCTAAAGA  94
      ||||| ||||||| |||||||||||||||||||||||  |||||||||||
seq2  GTTTGTTTTTTTTAAGACAGAGTTTCTCACTGACCTGACCTAGCTAAAGA  100

seq1  CTCTAAAAATTCCA-CAC-TGATGCCTACAGGAG-AAAAGGTAGGTGGGT  141
      |||||||||||||| ||| ||||||||||| ||| ||||| |||||||||
seq2  CTCTAAAAATTCCACCACTTGATGCCTACAAGAGAAAAAGTTAGGTGGGT  150

seq1  AAGAC-TCTTCACTGAGGCAGA-GATACTTTTCTACTA-CTGAGG-ATAA  187
      ||||| ||| |||||||||||| ||||||||||||||| |||||| ||||
seq2  AAGACTTCTACACTGAGGCAGAGGATACTTTTCTACTACCTGAGGAATAA  200

seq1  GTAATGTTCAGAAG-ATGTAGC-TTTTCAG-AAGATG-AGTAATG-AAGT  232
      |||||||||||||| ||||||| ||||||| |||||| ||||||| ||||
seq2  GTAATGTTCAGAAGAATGTAGCTTTTTCAGAAAGATGAAGTAATGAAAGT  250

seq1  AACGTAAG-AAAATGAGA-TTAGTGA-TACAGTTTACAAAGCCAAAGGGA  279
      |||||||| ||||||||| ||||||| |||||||||||||||||||||||
seq2  AACGTAAGAAAAATGAGATTTAGTGATTACAGTTTACAAAGCCAAAGGGA  300

seq1  AAGCAAGGGCAAAAATTCCACTGTTTGTACAGCAATTAGTAGACCATGTC  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGGGCAAAAATTCCACTGTTTGTACAGCAATTAGTAGACCATGTC  350

seq1  GCCTGTAGTCTCTGAACAGTGAGTGATATATGTTACATTGAGATTAAGTT  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAGTCTCTGAACAGTGAGTGATATATGTTACATTGAGATTAAGTT  400

seq1  TTATTTATTTGCAATACTTGAATTTGATCAGAGAGCCTCATGCACAGTAG  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTGCAATACTTGAATTTGATCAGAGAGCCTCATGCACAGTAG  450

seq1  GCAAGTTACCACTAGGCAAAGTAAGAGGATTCAATGGAATACTGTATGTT  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTACCACTAGGCAAAGTAAGAGGATTCAATGGAATACTGTATGTT  500

seq1  CAGTGCAATGTCTGTCTTTGTAATCCTTCATAACCACTTATCACTGCTAG  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAATGTCTGTCTTTGTAATCCTTCATAACCACTTATCACTGCTAG  550

seq1  ATATTAGTACTATAGAATATATCCTCTCAAATGTTTGAATGTTAAGAAAT  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGTACTATAGAATATATCCTCTCAAATGTTTGAATGTTAAGAAAT  600

seq1  ATGCAGTTCCCTTTTGGTTTTTGCTAAGTAGCCAAGTGTAGTCTTGAACT  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTTCCCTTTTGGTTTTTGCTAAGTAGCCAAGTGTAGTCTTGAACT  650

seq1  CACAATCCTCCTATCCCAGACTCCAGAGTAGTACAACTTCAGACATGTAC  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCCTCCTATCCCAGACTCCAGAGTAGTACAACTTCAGACATGTAC  700

seq1  CACTGTCCCCAGTTATTTTTTAAATGAGCTTGAAGTGTAGAAATACCTAC  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCCCCAGTTATTTTTTAAATGAGCTTGAAGTGTAGAAATACCTAC  750

seq1  AGCATTAAACCCAAAAGGACTATATATACAACATTTGTAAGCAAAGGGAT  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAAACCCAAAAGGACTATATATACAACATTTGTAAGCAAAGGGAT  800

seq1  GTCATTAAGAATGATTGGTTAGCCGGGCGTGGTGTCGCATGCCTTTAATC  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTAAGAATGATTGGTTAGCCGGGCGTGGTGTCGCATGCCTTTAATC  850

seq1  CTAGCACTCGGGAAGCAGAGGCAGGCGGATTTCTGAGTTGGAGGCCAGCC  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACTCGGGAAGCAGAGGCAGGCGGATTTCTGAGTTGGAGGCCAGCC  900

seq1  TGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCT  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCT  950

seq1  GTCTCGAAAAAACC-AAAAAAAAAAAAAAAAGAAGGATTGGTTAGAGATA  978
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTCTCGAAAAAACCAAAAAAAAAAAAAAAAAGAAGGATTGGTTAGAGATA  1000

seq1  GGTGTGTAATCCAGCAACTGAGAAGCTGAAGCAAGAGGAACTTGAGTTCA  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTAATCCAGCAACTGAGAAGCTGAAGCAAGAGGAACTTGAGTTCA  1050

seq1  AGCTCTGGGCTATAAAGTTAGATGCTATTAGAAAGAGCCAGGTGCTGGAG  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGGCTATAAAGTTAGATGCTATTAGAAAGAGCCAGGTGCTGGAG  1100

seq1  AGAGAATTC  1087
      |||||||||
seq2  AGAGAATTC  1109

seq1: chr14_27317983_27319140
seq2: B6Ng01-338J19.g_66_1224

seq1  GAATTCCTCTGTTGCCGGGTGTGGTGGCGCACACCTTTAATCCCAGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGTTGCCGGGTGTGGTGGCGCACACCTTTAATCCCAGCACT  50

seq1  CGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAACCTGGTCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAACCTGGTCTAC  100

seq1  AAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAATCCTGTCTCGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAATCCTGTCTCGAA  150

seq1  AAACCAAAAAAAAAAAAAAAAAATCTTGGCAAATTACTATTTGGGCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAAAAAAAAAAAAAAATCTTGGCAAATTACTATTTGGGCTAAA  200

seq1  AAAATATAAATTCCTTACATGATTCAAGGGCAAAGGCTCCTGATTTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAAATTCCTTACATGATTCAAGGGCAAAGGCTCCTGATTTTCTG  250

seq1  CTACCACATGATTTGGACATTCAGATAAAGACATCCCTCATGGCACCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACATGATTTGGACATTCAGATAAAGACATCCCTCATGGCACCCAC  300

seq1  TTCTCAGAATAAGTAATACTCCAGTCAGCAATCACTGGCTGGCTTACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGAATAAGTAATACTCCAGTCAGCAATCACTGGCTGGCTTACATT  350

seq1  CTTGAGCTGAAAGTCAGTAACAGTATTATGTTCATTTTCTACCTGCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCTGAAAGTCAGTAACAGTATTATGTTCATTTTCTACCTGCACTT  400

seq1  ACAGCCTAGGCACACGTCCTAAACATTTCCCCTAGTAAAATTTTGAGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTAGGCACACGTCCTAAACATTTCCCCTAGTAAAATTTTGAGACC  450

seq1  CAAGTTGGAGAAGTTGTGCAATTTTCTCTTAACTATTTCCACTCATTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGGAGAAGTTGTGCAATTTTCTCTTAACTATTTCCACTCATTTGT  500

seq1  TTGTTTTGAGATAGGTCTCACTACAGAACCTGTGGTTGACCTTAAACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGAGATAGGTCTCACTACAGAACCTGTGGTTGACCTTAAACATA  550

seq1  CAGAGATTTACCTGTTTCTGCCTCCTGAATGTTCAAATAAAATGTACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTTACCTGTTTCTGCCTCCTGAATGTTCAAATAAAATGTACTCA  600

seq1  CCTCCATGAAAATTTTTTTGATTTCTGGTCCAGTAGGCTGGATCAGCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGAAAATTTTTTTGATTTCTGGTCCAGTAGGCTGGATCAGCATG  650

seq1  TTAAAGGTACTTGCCCTCAAGCCTGAAACCAGAGTTTGCTCCCTGGGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTACTTGCCCTCAAGCCTGAAACCAGAGTTTGCTCCCTGGGACA  700

seq1  CACACAGTAGGGAAAAAAGCCGCCATATGAGCTATGTACAGGTACATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGTAGGGAAAAAAGCCGCCATATGAGCTATGTACAGGTACATGTA  750

seq1  CACACACACACACACACACACACACACATAAACTCAAAGAATAAATTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACATAAACTCAAAGAATAAATTGAT  800

seq1  TTCA-TTCACTTCCATGAGAAGCAACACCATTTATTCCCAGAATTCAGCT  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCACTTCCATGAGAAGCAACACCATTTATTCCCAGAATTCAGCT  850

seq1  ATATCGAGTTTTATATGCAGAGAGTAAAGGCAAACAAGGAATTCATTACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGAGTTTTATATGCAGAGAGTAAAGGCAAACAAGGAATTCATTACT  900

seq1  CATCAATGACAAAATAATTCACAATCATCACAGTCACTATGTGCTTAGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATGACAAAATAATTCACAATCATCACAGTCACTATGTGCTTAGAC  950

seq1  G-AGCTATTC-TGCATGCA-TTTTTCTCACAGAAGGCACTTGTTACATTA  996
      | |||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  GAAGCTATTCTTGCATGCATTTTTTCTCACAGAAGGCACTTGTTACATTA  1000

seq1  TCTTCAC-AGAAC-AAATAAGTAATTGAGAATTGAAACAGATTAAGTAAC  1044
      ||||||| ||||| ||||||||||||||| |||| |||||| || |||||
seq2  TCTTCACAAGAACAAAATAAGTAATTGAG-ATTG-AACAGA-TAGGTAAC  1047

seq1  TTGCTAAAAGTGTTCCCAAACTAGTCAT-GAGGAGAAAGGTGCATTTTAA  1093
      |||||||| ||||| ||||||||||||| ||||| | | ||||||||| |
seq2  TTGCTAAAGGTGTT-CCAAACTAGTCATGGAGGA-AGAAGTGCATTTT-A  1094

seq1  ACATTATGTTTTATTGTTTGTTTTTGAGACAAAATTGTACACA-TGCAAG  1142
      ||||||   ||||||||| ||||| |||||  ||||||||||| ||||||
seq2  ACATTAATGTTTATTGTTGGTTTTGGAGAC-CAATTGTACACAGTGCAAG  1143

seq1  CTGTCACCCAGCTTGT  1158
      ||||  | ||||||||
seq2  CTGTACCTCAGCTTGT  1159