BAC Information

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BAC

Clone NameB6Ng01-339H14
Chromosome14 (Build37)
Map Location 114,434,517 - 114,522,322
singlet/doubletdoublet
Overlap genenone
Upstream geneTpm3-rs7, LOC100043510, LOC382947
Downstream geneLOC668791, LOC100043821, LOC100043521, Gpc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339H14.bB6Ng01-339H14.g
ACCGA123462GA123463
length1,072990
definitionB6Ng01-339H14.b B6Ng01-339H14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,434,517 - 114,435,583)(114,521,330 - 114,522,322)
sequence
gaattcactatttttatccaatgtttaagaaatagaaggcagttaagata
atataaaaccagtctgctagacatgcaatagatttctctctgggaagtta
ttatagtgttattttcatataattcagccactgattggtataatactatt
atattcatgtacttctactgtagggatgcatgagttttaaaaagtataaa
atcatgtaaaacataacaatatcttctttacaaaacctatctacaacata
ttcaaatgagatgtgttaatgtccttatgcatattttccattaatatgac
ctattcatattctataaagatttgaaatattaaaaagaaattcatatgta
taaaattaactcaataacatatttgttagttttaaaaatagtattcttca
atgacttttttgttattgaactattatacctagcctaagaaatccagaag
acttcctcaaaatattgtttttactagaaaacctttattgcaatctattt
tgtataatcgctatttgttgcaatcatgttttctatttagtttgctaaaa
aggcctcttttttctttgtctgtgatatttttgcatttcaagagaataat
ctaaacactgtatatacttttccctgagtcttgtttacagtggagggctg
gaaatcttcaagctgacttctcctgtttatatgtatcaaaacaaagttgt
ctacctcatagggttgataaattcatgcactcacgaagagtggttggctg
cagaaaatttacagatgatcaagcaagtcaagattcagcatgaggccgcc
aaagaccattccatacctgaggagccattggcagttcatggttgccgagt
agggatggtcacttaactgatttccctctttggggaaataaccaaaataa
aacaggacttgaaaatttctctaaatgtattatctcaccaccacctccca
agttgacacatcaaattttaaaatttagatttaggcatttgaaaacgatt
gggtttcaaatatttcacaatataaactttcaagccttgagaattttttt
atgtatgcaaaatagaatatga

gaattcatgtattcacatataaagttatgtgggataaagaaaacctggct
cattgtggtggcacatgccagtaggatttcctgaaggaggcagaggcaga
agcatcatgggtatgaggccatcctgagctacacaaggctctagagatga
ctcagcgtttaagagcactcactggtcttccagaggtcccaagttcaatc
gccaggaacctcatggtggctcacaaccatctgtagtgggatctgatgct
ctcttctggagtgactgagaacagtgactgtgtatttacatgtataaaat
aagtaaaatctaaacaaaacaaaacctgaaaccttgaaacgaaatacaga
cttctatgtagttcagagagaagatccataaaagccagaatcatactgtt
ctcactattatcagcatgcttaaaaaaaaaaaaaaaaaaaattaaggtgt
tgcatatgtaactattagtaatttactagttattcattcaaattaaattg
tattcatttcctgttactgccattctcaaggctcataatataagtaacaa
aagcttatagctttacattctggttatagtaagtcctgagtagatttcat
tgttctacaatcaaagtgttggaattcctcctgagatccacagagaaata
tctgtttctttctttactctcgaaagtcgggtattttttcatgtagcatc
gatggaacactgtctccctgtgcccacaatctagtttataaatctataag
atagtataagactgacctgtataatcaaagataatagctttattttaaga
tttttgtgatgagaaatcatatttctatctccaagttaaatttcttccat
gccaaaagtgtagatatcagacttcaggcaagaagtaacatgtcttgagg
atattatttgggttagagagatacaggatagtgtgcatacatattttgag
aaattctcacagtagaaatgacagctgtcataaaataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_114434517_114435583
seq2: B6Ng01-339H14.b_50_1121

seq1  GAATTCACTATTTTTATCCAATGTTTAAGAAATAGAAGGCAGTTAAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATTTTTATCCAATGTTTAAGAAATAGAAGGCAGTTAAGATA  50

seq1  ATATAAAACCAGTCTGCTAGACATGCAATAGATTTCTCTCTGGGAAGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAACCAGTCTGCTAGACATGCAATAGATTTCTCTCTGGGAAGTTA  100

seq1  TTATAGTGTTATTTTCATATAATTCAGCCACTGATTGGTATAATACTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTGTTATTTTCATATAATTCAGCCACTGATTGGTATAATACTATT  150

seq1  ATATTCATGTACTTCTACTGTAGGGATGCATGAGTTTTAAAAAGTATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATGTACTTCTACTGTAGGGATGCATGAGTTTTAAAAAGTATAAA  200

seq1  ATCATGTAAAACATAACAATATCTTCTTTACAAAACCTATCTACAACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTAAAACATAACAATATCTTCTTTACAAAACCTATCTACAACATA  250

seq1  TTCAAATGAGATGTGTTAATGTCCTTATGCATATTTTCCATTAATATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGAGATGTGTTAATGTCCTTATGCATATTTTCCATTAATATGAC  300

seq1  CTATTCATATTCTATAAAGATTTGAAATATTAAAAAGAAATTCATATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATATTCTATAAAGATTTGAAATATTAAAAAGAAATTCATATGTA  350

seq1  TAAAATTAACTCAATAACATATTTGTTAGTTTTAAAAATAGTATTCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTAACTCAATAACATATTTGTTAGTTTTAAAAATAGTATTCTTCA  400

seq1  ATGACTTTTTTGTTATTGAACTATTATACCTAGCCTAAGAAATCCAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTTTTTGTTATTGAACTATTATACCTAGCCTAAGAAATCCAGAAG  450

seq1  ACTTCCTCAAAATATTGTTTTTACTAGAAAACCTTTATTGCAATCTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTCAAAATATTGTTTTTACTAGAAAACCTTTATTGCAATCTATTT  500

seq1  TGTATAATCGCTATTTGTTGCAATCATGTTTTCTATTTAGTTTGCTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAATCGCTATTTGTTGCAATCATGTTTTCTATTTAGTTTGCTAAAA  550

seq1  AGGCCTCTTTTTTCTTTGTCTGTGATATTTTTGCATTTCAAGAGAATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCTTTTTTCTTTGTCTGTGATATTTTTGCATTTCAAGAGAATAAT  600

seq1  CTAAACACTGTATATACTTTTCCCTGAGTCTTGTTTACAGTGGAGGGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACACTGTATATACTTTTCCCTGAGTCTTGTTTACAGTGGAGGGCTG  650

seq1  GAAATCTTCAAGCTGACTTCTCCTGTTTATATGTATCAAAACAAAGTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTCAAGCTGACTTCTCCTGTTTATATGTATCAAAACAAAGTTGT  700

seq1  CTACCTCATAGGGTTGATAAATTCATGCACTCACGAAGAGTGGTTGGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCATAGGGTTGATAAATTCATGCACTCACGAAGAGTGGTTGGCTG  750

seq1  CAGAAAATTTACAGATGATCAAGCAAGTCAAGATTCAGCATGAGGCCGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATTTACAGATGATCAAGCAAGTCAAGATTCAGCATGAGGCCGCC  800

seq1  AAAGACCATTCCATACCTGAGGAGCCATTGGCAGTTCATGGTTGCCGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCATTCCATACCTGAGGAGCCATTGGCAGTTCATGGTTGCCGAGT  850

seq1  AGGGATGGTCACTTAACTGATTTCCCTCTTTGGGGAAATAACCAAAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGGTCACTTAACTGATTTCCCTCTTTGGGGAAATAACCAAAATAA  900

seq1  AACAGGACTTGAAAA-TTCTCTAAATGTATTATCTCACCACCACCT-CCA  948
      ||||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  AACAGGACTTGAAAATTTCTCTAAATGTATTATCTCACCACCACCTCCCA  950

seq1  AGTTGACACATCAAAATTTAAAATTTAGATTTAGGCATTTGAAAACGATT  998
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGTTGACACATCAAATTTTAAAATTTAGATTTAGGCATTTGAAAACGATT  1000

seq1  GG--TTCAAATATTTCACAATATAAAC-TTCAAG-CTTGAG-ATTTTTTT  1043
      ||  ||||||||||||||||||||||| |||||| |||||| ||||||||
seq2  GGGTTTCAAATATTTCACAATATAAACTTTCAAGCCTTGAGAATTTTTTT  1050

seq1  ATGTTAATGGAAAATAGAATATGA  1067
      ||||  ||| ||||||||||||||
seq2  ATGT--ATGCAAAATAGAATATGA  1072


seq1: chr14_114521330_114522322
seq2: B6Ng01-339H14.g_66_1055 (reverse)

seq1  TTTTATTTTATGACAGCTGTCATTTCTACTGTGAGAATTTTCTCAAAATA  50
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTTATTTTATGACAGCTGTCATTTCTACTGTGAGAA-TTTCTCAAAATA  49

seq1  TGTATGCACACTATCCTGTATCTCTCTAAACCAAATAATATCCTCCAAGA  100
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  TGTATGCACACTATCCTGTATCTCTCTAACCCAAATAATATCCT-CAAGA  98

seq1  CATGTTTACTTCTTGCCTGAAGTCTGATATCTACACTTTTGGCATGGAAG  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATG-TTACTTCTTGCCTGAAGTCTGATATCTACACTTTTGGCATGGAAG  147

seq1  AAATTTAACTTGGAGATAGAAATATGATTTCTCATCACAAAAATCTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAACTTGGAGATAGAAATATGATTTCTCATCACAAAAATCTTAAA  197

seq1  ATAAAGCTATTATCTTTGATTATACAGGTCAGTCTTATACTATCTTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTATTATCTTTGATTATACAGGTCAGTCTTATACTATCTTATAG  247

seq1  ATTTATAAACTAGATTGTGGGCACAGGGAGACAGTGTTCCATCGATGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAACTAGATTGTGGGCACAGGGAGACAGTGTTCCATCGATGCTA  297

seq1  CATGAAAAAATACCCGACTTTCGAGAGTAAAGAAAGAAACAGATATTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAAAATACCCGACTTTCGAGAGTAAAGAAAGAAACAGATATTTCT  347

seq1  CTGTGGATCTCAGGAGGAATTCCAACACTTTGATTGTAGAACAATGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGATCTCAGGAGGAATTCCAACACTTTGATTGTAGAACAATGAAAT  397

seq1  CTACTCAGGACTTACTATAACCAGAATGTAAAGCTATAAGCTTTTGTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCAGGACTTACTATAACCAGAATGTAAAGCTATAAGCTTTTGTTAC  447

seq1  TTATATTATGAGCCTTGAGAATGGCAGTAACAGGAAATGAATACAATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTATGAGCCTTGAGAATGGCAGTAACAGGAAATGAATACAATTTA  497

seq1  ATTTGAATGAATAACTAGTAAATTACTAATAGTTACATATGCAACACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATGAATAACTAGTAAATTACTAATAGTTACATATGCAACACCTT  547

seq1  AATTTTTTTTTTTTTTTTTTTTAAGCATGCTGATAATAGTGAGAACAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTTTTTTTTTTTTTTAAGCATGCTGATAATAGTGAGAACAGTA  597

seq1  TGATTCTGGCTTTTATGGATCTTCTCTCTGAACTACATAGAAGTCTGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTGGCTTTTATGGATCTTCTCTCTGAACTACATAGAAGTCTGTAT  647

seq1  TTCGTTTCAAGGTTTCAGGTTTTGTTTTGTTTAGATTTTACTTATTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTTCAAGGTTTCAGGTTTTGTTTTGTTTAGATTTTACTTATTTTAT  697

seq1  ACATGTAAATACACAGTCACTGTTCTCAGTCACTCCAGAAGAGAGCATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAAATACACAGTCACTGTTCTCAGTCACTCCAGAAGAGAGCATCA  747

seq1  GATCCCACTACAGATGGTTGTGAGCCACCATGAGGTTCCTGGCGATTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCACTACAGATGGTTGTGAGCCACCATGAGGTTCCTGGCGATTGAA  797

seq1  CTTGGGACCTCTGGAAGACCAGTGAGTGCTCTTAAACGCTGAGTCATCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGACCTCTGGAAGACCAGTGAGTGCTCTTAAACGCTGAGTCATCTC  847

seq1  TAGAGCCTTGTGTAGCTCAGGATGGCCTCATACCCATGATGCTTCTGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCTTGTGTAGCTCAGGATGGCCTCATACCCATGATGCTTCTGCCT  897

seq1  CTGCCTCCTTCAGGAAATCCTACTGGCATGTGCCACCACAATGAGCCAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCTTCAGGAAATCCTACTGGCATGTGCCACCACAATGAGCCAGG  947

seq1  TTTTCTTTATCCCACATAACTTTATATGTGAATACATGAATTC  993
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTATCCCACATAACTTTATATGTGAATACATGAATTC  990


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