BAC Information

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BAC

Clone NameB6Ng01-339I08
Chromosome14 (Build37)
Map Location 6,516,022 - 6,617,265
singlet/doubletdoublet
Overlap geneLOC100041817, LOC100041431, LOC100041438, LOC100041442, LOC100041848
Upstream geneLOC100041158, LOC100041515, LOC100041184, EG666706, LOC100041195, LOC100041545, LOC100041565, LOC100041215, LOC100041226, ENSMUSG00000057445, LOC100041598, LOC100041243, EG666684, LOC100041268, LOC100041279, LOC100041651, LOC100041287, LOC100041299, LOC666637, EG622640, LOC100041333, LOC100041678, LOC100041702, LOC100041363, LOC100041721, LOC100041784, LOC100041735, LOC100041406, LOC100041825, LOC100041421
Downstream geneLOC100041456, LOC100041758, LOC100041470, LOC100041804, LOC100041487, LOC100041747, LOC100041507, LOC100041836, LOC100041728, LOC100041774, LOC100041530, LOC100041540, LOC100041840, EG666844, LOC666851, LOC100041569, LOC100041970, LOC100042000, EG666874, B930046C15Rik, LOC100041600, LOC100041958, LOC100041964, LOC546590, LOC666906, LOC100042024, LOC100041664, LOC100042077, LOC100041675, LOC666329, EG666833, LOC100042043, EG666918
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339I08.bB6Ng01-339I08.g
ACCGA123498GA123499
length1,1511,136
definitionB6Ng01-339I08.b B6Ng01-339I08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,616,101 - 6,617,265)(6,516,022 - 6,517,172)
sequence
gaattcccatagctgtggagcaaaccaggcctgttacaggagcccattga
gggtcttgataatctaaagtactcacaatatcttatctgtgtagcattta
gcatgactgttcttcaacatcattttctcagagttaaaatcagccttagt
gggggttgggagaaatgaggaccttcagacagttctggtagtataaaatt
gcttatgtctgttagaggccatgttcagaaagtggaaaagaagtcttttt
tgacccagtgcttccagaacaaggaggagttatccacagagttgagggcg
ttcagggttgtagtggtcgtcagagcagccctgaaggagaagctatcctg
atgtccatctgctgaaggatgaaaaggccctgtgtggtgcagcccttcca
tgaactcagtgtgcgataatccatgcaagcttttgtccttcaaattgtca
gccttatcctactcaaaatagctctgacacagtcacattctagggagaaa
aatgttcctttgcatcctggttgtagacagttcctattactcttggctca
tacctttggacaccaagtcagtcaggtgatggaaaagggagatcctattg
gaagaaactgtttactttgggacaagtctgaaacagtgagcaacaacaag
agactggtccatcaccaacatgtgaccctaggctgggaaacaaacctatt
ctacacagccttgggaacttgctgagccagattggataacaggacaagaa
ccctgaaattcagactggtatatgagtggaaagcatatcactgattgagc
tgcctatatgctatgcccactaagtacctttcccattcaagatttgtttt
tatgcctccaaagtgtcctgggagatttttatatttgtattaaccgggaa
actaaacaggtcactgcagtacaatatgcttgtattgcataaatacaaat
atatgtgtgtttgagggtgtaacctacatagtcacagggggtgtttttct
gtttcttcatgaccatcacttttaggtcagtgcagcttttgatattttta
tttagcaagttggcagaatactgtgactatgagtacccaatggattggat
ggatgggggttcctggtatgagatgaaggattggacaagaggactccctg
t
gaattctgtaaccaaagttgtgcacaacaatggctcaccaatgaagatct
caaggtaacagtaataaaagggaattcatgagcaacaggggaaaaattat
ttgaaactctaaaacactaaagaaagtcaaggaactttttataaaccaaa
tgagacaatatgccatgtatttgaaattgtagtagccatattgagaaata
gagtttgatgctggagacctgccataaatgccaattcagattgggcctga
ggtgtgctaggggactccctcaagacaaagaaacaaactgaacaaagaaa
agacaagtggatgtcccttaggtcagagaaccattgtgaaagcttttaac
taggaaaagcagttagtaggttagaaactattttaaattggggattcctt
gaaagtttctcagaagcaatgggcttccaccaggcttttcccctgagctg
cctttagtgggaaatgaggcagctttcctttctttgcctacacagtattt
ccacccatcctgggtttcctctacagctgcagatgctgtagagttgcagt
catttacttagcaggaaccagcttagactggctttgcttttcaaagctac
aggccttaggagctggctactgaattctgttttgatcagagcgggctgca
aggctaggtttttataagtaatggatacctgaactttgaggaattaattg
cctggttcctggatgtgaagctgtgcaatgtgtctttaagcaatcagcat
cctttgaaagagtaagaaatggaacccgtcttcttcaccaaataggcatg
ggccttagaccacctttcacttcagtcacccttgactggattctgggaaa
tgttgctatataaaacctggaaagtttaatgtgtaggttgaaatacagga
tagctgccaaagtgacctttcactatatagagtgtggggaagaagaacat
tagaatcataatcacattttggtcccagcttgtgccctctgtcttcttta
cattaaaggaaaagtctgactgcgtagcctttactagggtctttgtcttg
acttgtctgtgaaccaaatagtcagactaagacaaagttcataaagtcat
attgatttgccatgtatagcttcgtactctagcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_6616101_6617265
seq2: B6Ng01-339I08.b_45_1195 (reverse)

seq1  ACAGGG-TTCCTCTTGT-CAATCCCTCTATCTTCAAATAACCAGAGACAC  48
      ||||||  ||||||||| |||||| || ||||    ||| |  ||  | |
seq2  ACAGGGAGTCCTCTTGTCCAATCCTTC-ATCT---CATACCAGGAACCCC  46

seq1  CATACAACACAAAACCCATGGGTACTTCATAGGTCACAGTA-TCTGCAAA  97
      ||| ||   | || ||  ||||||| ||||| ||||||||| ||||| ||
seq2  CATCCA--TCCAATCCATTGGGTAC-TCATA-GTCACAGTATTCTGCCAA  92

seq1  ACTTTGCTAAATAAAAATATTCAAAAGGCCTGGCACTGAACCTTAAAAGT  147
         |||||||||||||||| |||||||  || |||||||  | |||||||
seq2  --CTTGCTAAATAAAAATA-TCAAAAG--CT-GCACTGA--CCTAAAAGT  134

seq1  GATGGTCATGAAGAAACAGAAAAACA-CCCCTGTGACTATTGTAGGTTAC  196
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  GATGGTCATGAAGAAACAGAAAAACACCCCCTGTGACTA-TGTAGGTTAC  183

seq1  ACCCTCAAACACACATAATATTTGTATTTATGCAATACAAGCATATTGTA  246
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACCCTCAAACACACAT-ATATTTGTATTTATGCAATACAAGCATATTGTA  232

seq1  CTGCAGTGACCTGTTTAGTTTCCCGGTTAATACAAATATAAAAATCTCCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTGACCTGTTTAGTTTCCCGGTTAATACAAATATAAAAATCTCCC  282

seq1  AGGACACTTTGGAGGCATAAAAACAAATCTTGAATGGGAAAGGTACTTAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACTTTGGAGGCATAAAAACAAATCTTGAATGGGAAAGGTACTTAG  332

seq1  TGGGCATAGCATATAGGCAGCTCAATCAGTGATATGCTTTCCACTCATAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATAGCATATAGGCAGCTCAATCAGTGATATGCTTTCCACTCATAT  382

seq1  ACCAGTCTGAATTTCAGGGTTCTTGTCCTGTTATCCAATCTGGCTCAGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCTGAATTTCAGGGTTCTTGTCCTGTTATCCAATCTGGCTCAGCA  432

seq1  AGTTCCCAAGGCTGTGTAGAATAGGTTTGTTTCCCAGCCTAGGGTCACAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCAAGGCTGTGTAGAATAGGTTTGTTTCCCAGCCTAGGGTCACAT  482

seq1  GTTGGTGATGGACCAGTCTCTTGTTGTTGCTCACTGTTTCAGACTTGTCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGATGGACCAGTCTCTTGTTGTTGCTCACTGTTTCAGACTTGTCC  532

seq1  CAAAGTAAACAGTTTCTTCCAATAGGATCTCCCTTTTCCATCACCTGACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAAACAGTTTCTTCCAATAGGATCTCCCTTTTCCATCACCTGACT  582

seq1  GACTTGGTGTCCAAAGGTATGAGCCAAGAGTAATAGGAACTGTCTACAAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGTGTCCAAAGGTATGAGCCAAGAGTAATAGGAACTGTCTACAAC  632

seq1  CAGGATGCAAAGGAACATTTTTCTCCCTAGAATGTGACTGTGTCAGAGCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGCAAAGGAACATTTTTCTCCCTAGAATGTGACTGTGTCAGAGCT  682

seq1  ATTTTGAGTAGGATAAGGCTGACAATTTGAAGGACAAAAGCTTGCATGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAGTAGGATAAGGCTGACAATTTGAAGGACAAAAGCTTGCATGGA  732

seq1  TTATCGCACACTGAGTTCATGGAAGGGCTGCACCACACAGGGCCTTTTCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCGCACACTGAGTTCATGGAAGGGCTGCACCACACAGGGCCTTTTCA  782

seq1  TCCTTCAGCAGATGGACATCAGGATAGCTTCTCCTTCAGGGCTGCTCTGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGCAGATGGACATCAGGATAGCTTCTCCTTCAGGGCTGCTCTGA  832

seq1  CGACCACTACAACCCTGAACGCCCTCAACTCTGTGGATAACTCCTCCTTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCACTACAACCCTGAACGCCCTCAACTCTGTGGATAACTCCTCCTTG  882

seq1  TTCTGGAAGCACTGGGTCAAAAAAGACTTCTTTTCCACTTTCTGAACATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAAGCACTGGGTCAAAAAAGACTTCTTTTCCACTTTCTGAACATG  932

seq1  GCCTCTAACAGACATAAGCAATTTTATACTACCAGAACTGTCTGAAGGTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTAACAGACATAAGCAATTTTATACTACCAGAACTGTCTGAAGGTC  982

seq1  CTCATTTCTCCCAACCCCCACTAAGGCTGATTTTAACTCTGAGAAAATGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCTCCCAACCCCCACTAAGGCTGATTTTAACTCTGAGAAAATGA  1032

seq1  TGTTGAAGAACAGTCATGCTAAATGCTACACAGATAAGATATTGTGAGTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAGAACAGTCATGCTAAATGCTACACAGATAAGATATTGTGAGTA  1082

seq1  CTTTAGATTATCAAGACCCTCAATGGGCTCCTGTAACAGGCCTGGTTTGC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGATTATCAAGACCCTCAATGGGCTCCTGTAACAGGCCTGGTTTGC  1132

seq1  TCCACAGCTATGGGAATTC  1165
      |||||||||||||||||||
seq2  TCCACAGCTATGGGAATTC  1151

seq1: chr14_6516022_6517172
seq2: B6Ng01-339I08.g_68_1203

seq1  GAATTCTGTAACCAAAGTTGTGCACAACAATGGCTCACCAATGAAGATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAACCAAAGTTGTGCACAACAATGGCTCACCAATGAAGATCT  50

seq1  CAAGGTAACAGTAATAAAAGGGAATTCATGAGCAACAGGGGAAAAATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAACAGTAATAAAAGGGAATTCATGAGCAACAGGGGAAAAATTAT  100

seq1  TTGAAACTCTAAAACACTAAAGAAAGTCAAGGAACTTTTTATAAACCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTCTAAAACACTAAAGAAAGTCAAGGAACTTTTTATAAACCAAA  150

seq1  TGAGACAATATGCCATGTATTTGAAATTGTAGTAGCCATATTGAGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAATATGCCATGTATTTGAAATTGTAGTAGCCATATTGAGAAATA  200

seq1  GAGTTTGATGCTGGAGACCTGCCATAAATGCCAATTCAGATTGGGCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGATGCTGGAGACCTGCCATAAATGCCAATTCAGATTGGGCCTGA  250

seq1  GGTGTGCTAGGGGACTCCCTCAAGACAAAGAAACAAACTGAACAAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCTAGGGGACTCCCTCAAGACAAAGAAACAAACTGAACAAAGAAA  300

seq1  AGACAAGTGGATGTCCCTTAGGTCAGAGAACCATTGTGAAAGCTTTTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGTGGATGTCCCTTAGGTCAGAGAACCATTGTGAAAGCTTTTAAC  350

seq1  TAGGAAAAGCAGTTAGTAGGTTAGAAACTATTTTAAATTGGGGATTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAAGCAGTTAGTAGGTTAGAAACTATTTTAAATTGGGGATTCCTT  400

seq1  GAAAGTTTCTCAGAAGCAATGGGCTTCCACCAGGCTTTTCCCCTGAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTTCTCAGAAGCAATGGGCTTCCACCAGGCTTTTCCCCTGAGCTG  450

seq1  CCTTTAGTGGGAAATGAGGCAGCTTTCCTTTCTTTGCCTACACAGTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGTGGGAAATGAGGCAGCTTTCCTTTCTTTGCCTACACAGTATTT  500

seq1  CCACCCATCCTGGGTTTCCTCTACAGCTGCAGATGCTGTAGAGTTGCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCATCCTGGGTTTCCTCTACAGCTGCAGATGCTGTAGAGTTGCAGT  550

seq1  CATTTACTTAGCAGGAACCAGCTTAGACTGGCTTTGCTTTTCAAAGCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACTTAGCAGGAACCAGCTTAGACTGGCTTTGCTTTTCAAAGCTAC  600

seq1  AGGCCTTAGGAGCTGGCTACTGAATTCTGTTTTGATCAGAGCGGGCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTAGGAGCTGGCTACTGAATTCTGTTTTGATCAGAGCGGGCTGCA  650

seq1  AGGCTAGGTTTTTATAAGTAATGGATACCTGAACTTTGAGGAATTAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGGTTTTTATAAGTAATGGATACCTGAACTTTGAGGAATTAATTG  700

seq1  CCTGGTTCCTGGATGTGAAGCTGTGCAATGTGTCTTTAAGCAATCAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTCCTGGATGTGAAGCTGTGCAATGTGTCTTTAAGCAATCAGCAT  750

seq1  CCTTTGAAAGAGTAAGAAATGGAACCCGTCTTCTTCACCAAATAGGCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAAAGAGTAAGAAATGGAACCCGTCTTCTTCACCAAATAGGCATG  800

seq1  GGCCTTAGACCACCTTTCACTTCAGTCACCCTTGACTGGATTCTGGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTAGACCACCTTTCACTTCAGTCACCCTTGACTGGATTCTGGGAAA  850

seq1  TGTTGCTATATAAAACCTGG-AAGTTTAATGTGTAGGTTGAAATACAGGA  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTTGCTATATAAAACCTGGAAAGTTTAATGTGTAGGTTGAAATACAGGA  900

seq1  TAGCTGCCAAAGTGACCTTTCACTATATAGAGTGTGGGGAAG-AGAACAT  948
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAGCTGCCAAAGTGACCTTTCACTATATAGAGTGTGGGGAAGAAGAACAT  950

seq1  TAGAATCATAATCACATTTTGGTCCCAGCTTGTGCCCTCTGTCTTCTTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCATAATCACATTTTGGTCCCAGCTTGTGCCCTCTGTCTTCTTTA  1000

seq1  CATTAAAAGGAAAAGTCTGAACTGCGTTAGGCCTTTTACTAGGGGTCTTT  1048
      |||| |||||||||||||| |||||| |||  | ||||||| ||||||||
seq2  CATT-AAAGGAAAAGTCTG-ACTGCG-TAG--CCTTTACTA-GGGTCTTT  1044

seq1  GTCTTGACTTGTCTGTG-ACCAAATAGTCAGACTAAGACAAAGGTCAATA  1097
      ||||||||||||||||| ||||||||||||||||||||||||| || |||
seq2  GTCTTGACTTGTCTGTGAACCAAATAGTCAGACTAAGACAAAGTTC-ATA  1093

seq1  AAAGGGCATTATTTTGGTTTTGGCCATGTATAGGCTTTCTGTACTCTAGG  1147
      ||      | || ||| |||  |||||||||| ||||   |||||||| |
seq2  AA-----GTCATATTGATTT--GCCATGTATA-GCTT--CGTACTCTA-G  1132

seq1  CACT  1151
      ||||
seq2  CACT  1136