BAC Information

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BAC

Clone NameB6Ng01-339O03
Chromosome14 (Build37)
Map Location 25,112,124 - 25,113,241
singlet/doubletsinglet
Overlap geneE330034G19Rik
Upstream geneKcnma1, LOC620499, Dlg5, LOC100039335
Downstream geneLOC669325, Polr3a, Rps24, LOC669315, LOC100039411
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339O03.bB6Ng01-339O03.g
ACCGA123756GA123757
length1,1241,112
definitionB6Ng01-339O03.b B6Ng01-339O03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtgatacaatcatctggttgggaggtttttaatgattgcttct
atttccacaggagctagaggaatattcagatgccttccctgatcttgatt
gaactttggtaagcgatatttgtctagaaaatcattcatttcatatatat
ttcacaactttgagtagtgtggcattttcaagtaagacctaatgattcta
tgaatttcctcagtggcaataagttttcctagtggtttctgattttgtta
atttggttatgatctttttgtcttttaggtagtttggctaagggtttgtc
taacttgttgatttttttttcaaagaaccagctcttggtttgttgattct
ttgtattgttctctttgtttcaaattgattgatttcaaccctaagttgaa
ttgtttccttccacatactcctcttgtgtgtgtttgcctgttttctccct
tatggctttcatatgtatttttaagtttcttgtatgatgtggtggattga
ttatgattgacccagggagtggcaagattgggaggtgtgggattgcagga
ggaactgtgtcactgtagggatggtccttgagacacctcctcctagctgc
ctggaggacagcagtcttctcctgttcaacttcagaacaagatgtagaac
aatcagctccttctccagtaccacgccttcctggattctgccatgtttca
tactatgatgataatggactgaacctctgaacctataagctagccccaat
aagtgctgtcccttataaaagttgccttggtcatgtcttttgaaatggac
atgtgaaacctaaccaaaacagaagcaggtaccaggtactggggtattaa
tgtaatagacctaaccatgtttttgtttggatgaatatggatctggagaa
tttagatttgaaagctgtagaatgatttacgtggggcttaatgggtcacc
ttaggaggaatatgtaagacactggttgcctcaaggtgacttaaactatg
agggcctggcttcaagtgttttcaaggaaaagtaggttagtatgtggcag
agacttattcttgctgatatggttgaaagaaattgctggctgttttgccc
ttgctctaacaggctctggcctga

gaattctttacttgctaaggcatcttggagcaatttttaaaagttaagca
tatggtttatctgacagtatcccctaactcacgtttcacattgcaacaag
ccctgctggtacttcctggatgtgcttccaagcagctgtagatgatggta
caggtgaccttcatcctccacactcaccctggtgtgatttctcactgttt
gctttctcatattgctgaataggggtttttgagaacggaatgagatattc
ctgggcagggtttggaaagtaaagactcaatttcccactttggaagagct
aaggtgtttccaatcaagcctagagcaaatctctggctttgaaaggagga
gttgctcattggctaagatccaggagagtcttctgggaaggacgcttcag
tttctggtgagtacagggagaacattatcagggaggcaaaggctgttccc
catgacaccagcagtccattctctggacattctattgtatcctggagagc
tcctggcatcccctgtgatgtcaccagtgttgtggcaacaacaactgctc
ttagagcattccatcagtacttcagagttcatctcgaatcatgttttcaa
tgctgaggagcagagtaaggtagaaggaagctggacctccatctcagtgc
aatccagcaaggaagaagtggttctgggaagacccggtgcgtcctgggaa
gggagtgcccaacttcctggaagaagtgggctcgagctgggtcttccagt
aatggggcactggaattggagcctccaggaggcaaatggctttctgtagc
ttattgtaactcctgaaaatccaagggtttcaaagcattagtttgtccag
cacaagctgggatctggcaagaccaaatgtgttctactgtgagcgcagag
caggattggtgtataatctgggtaacaaaaggagaccaccaggggttcaa
ggtactgactgtttccagttgaggccttaccatcactgactttactctat
ggcttcacttatgtgcagtggctctgacaatgcagcagggagaggatgtg
atctggctatgtgaacttacgttatcagacgtgtctgttcagctctccat
tggaggtcttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_25112124_25113241
seq2: B6Ng01-339O03.g_67_1178

seq1  GAATTCTTTACTTGCTAAGGCATCTTGGAGCAATTTTTAAAAGTTAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACTTGCTAAGGCATCTTGGAGCAATTTTTAAAAGTTAAGCA  50

seq1  TATGGTTTATCTGACAGTATCCCCTAACTCACGTTTCACATTGCAACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTTATCTGACAGTATCCCCTAACTCACGTTTCACATTGCAACAAG  100

seq1  CCCTGCTGGTACTTCCTGGATGTGCTTCCAAGCAGCTGTAGATGATGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGGTACTTCCTGGATGTGCTTCCAAGCAGCTGTAGATGATGGTA  150

seq1  CAGGTGACCTTCATCCTCCACACTCACCCTGGTGTGATTTCTCACTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGACCTTCATCCTCCACACTCACCCTGGTGTGATTTCTCACTGTTT  200

seq1  GCTTTCTCATATTGCTGAATAGGGGTTTTTGAGAACGGAATGAGATATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCATATTGCTGAATAGGGGTTTTTGAGAACGGAATGAGATATTC  250

seq1  CTGGGCAGGGTTTGGAAAGTAAAGACTCAATTTCCCACTTTGGAAGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGGGTTTGGAAAGTAAAGACTCAATTTCCCACTTTGGAAGAGCT  300

seq1  AAGGTGTTTCCAATCAAGCCTAGAGCAAATCTCTGGCTTTGAAAGGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTTTCCAATCAAGCCTAGAGCAAATCTCTGGCTTTGAAAGGAGGA  350

seq1  GTTGCTCATTGGCTAAGATCCAGGAGAGTCTTCTGGGAAGGACGCTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCATTGGCTAAGATCCAGGAGAGTCTTCTGGGAAGGACGCTTCAG  400

seq1  TTTCTGGTGAGTACAGGGAGAACATTATCAGGGAGGCAAAGGCTGTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTGAGTACAGGGAGAACATTATCAGGGAGGCAAAGGCTGTTCCC  450

seq1  CATGACACCAGCAGTCCATTCTCTGGACATTCTATTGTATCCTGGAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACACCAGCAGTCCATTCTCTGGACATTCTATTGTATCCTGGAGAGC  500

seq1  TCCTGGCATCCCCTGTGATGTCACCAGTGTTGTGGCAACAACAACTGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCATCCCCTGTGATGTCACCAGTGTTGTGGCAACAACAACTGCTC  550

seq1  TTAGAGCATTCCATCAGTACTTCAGAGTTCATCTCGAATCATGTTTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCATTCCATCAGTACTTCAGAGTTCATCTCGAATCATGTTTTCAA  600

seq1  TGCTGAGGAGCAGAGTAAGGTAGAAGGAAGCTGGACCTCCATCTCAGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGGAGCAGAGTAAGGTAGAAGGAAGCTGGACCTCCATCTCAGTGC  650

seq1  AATCCAGCAAGGAAGAAGTGGTTCTGGGAAGACCCGGTGCGTCCTGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGCAAGGAAGAAGTGGTTCTGGGAAGACCCGGTGCGTCCTGGGAA  700

seq1  GGGAGTGCCCAACTTCCTGGAAGAAGTGGGCTCGAGCTGGGTCTTCCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGCCCAACTTCCTGGAAGAAGTGGGCTCGAGCTGGGTCTTCCAGT  750

seq1  AATGGGGCACTGGAATTGGAGCCTCCAGGAGGCAAATGGCTTTCTGTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGCACTGGAATTGGAGCCTCCAGGAGGCAAATGGCTTTCTGTAGC  800

seq1  TTATTGTAACTCCTG-AAATCCAAGGGTTTCAAAGCATTAGTTTGTCCAG  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTATTGTAACTCCTGAAAATCCAAGGGTTTCAAAGCATTAGTTTGTCCAG  850

seq1  CACAAAGCTGGGATCTGGCAAGACCAAATGTGTTCTACTGTGAGCGCAGA  899
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAC-AAGCTGGGATCTGGCAAGACCAAATGTGTTCTACTGTGAGCGCAGA  899

seq1  GCAGGGATTGGTGTATAATCT-GGTAACAAAAGGAGACCACCAGGG--TC  946
      ||| ||||||||||||||||| ||||||||||||||||||||||||  ||
seq2  GCA-GGATTGGTGTATAATCTGGGTAACAAAAGGAGACCACCAGGGGTTC  948

seq1  -AGGTACTGACTGTTTCCCAGTTTGAGGCC-TAACATCACTGAACTTTAC  994
       ||||||||||||||| |||| |||||||| || |||||||| |||||||
seq2  AAGGTACTGACTGTTT-CCAG-TTGAGGCCTTACCATCACTG-ACTTTAC  995

seq1  TCCAATGGCTTCACTTATGTGCAGTGGCTTCCTGACCATTGCAGCAGGGA  1044
      | | |||||||||||||||||||||||||  |||| || |||||||||||
seq2  T-CTATGGCTTCACTTATGTGCAGTGGCT--CTGA-CAATGCAGCAGGGA  1041

seq1  GAGGAATGTGGTTCTGGCTATGTGACCTTACGTTATCAGACGTGTCTGTC  1094
      |||| |||| | ||||||||||||| ||||||||||||||||||||||| 
seq2  GAGG-ATGT-GATCTGGCTATGTGAACTTACGTTATCAGACGTGTCTGTT  1089

seq1  AAGCTCT-CATTGAGAGTGTCTTCT  1118
       |||||| ||||| ||| |||||||
seq2  CAGCTCTCCATTG-GAG-GTCTTCT  1112


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