BAC Information

Click to search

BAC

Clone NameB6Ng01-340L06
Chromosome14 (Build37)
Map Location 117,664,333 - 117,664,769
singlet/doubletsinglet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340L06.bB6Ng01-340L06.g
ACCGA124323GA124324
length4311,212
definitionB6Ng01-340L06.b B6Ng01-340L06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
cagatcaaatattgaatgtgaagctgttgtttctgtcttcttctcctggg
tcagaaccttcaacgcatcaagtaggtttttcatctaaaatcaaacaagt
ctatttgtgaataattagctcttgaatgatgagtgacagctagtagggaa
acttggaaccccctcccttccctttaatgagttagcaattttttcttaat
ttgataagaaatagcactattcagagcctaaagaacttgagcaatactgg
tgatattacttagtaaacaagtgacatgatcttataaagtgtattttatt
ttataaatataataatatatatccacatgaatgatttaataccactgaca
ggaaagataccttgcttaatagtccaataaagtttttttcaagatgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattctcctctgaagaaacagactgggaggaagaagcagcccattacca
gccagctaattggtcaagaaaaaagccaaaagcggctggcgaaagccagc
gtactgttcaacctccgggcagtcggtttcaaggtccgccctatgcggag
cccccgccctgcgtagtgcgtcagcagtgcgcagagaggcagtgcgcaga
gaggcagtgcgcagattcattcattcccagagaggaacaaaggaaaatac
aacaggcatttccggtctttgaaggagccgagggtgggcgtgtccacgct
ctggtagaatacttacaaattaaagaacttgccgagtcggtccgtaaata
cggaaccaatgctaattttaccttggtgcagttagacaggctcgccggca
tggcactaactcctgctgactggcaaacgattgtaaaagccgctctccct
agtatgggcaaatatatggaatggagagcgctttggcacgaagctgcaca
agcgcaggcccgaacaaacgcagctgctttgactccagagcagagagatt
ggacttttgacttgttaacgggtcagggagcttattctgctgatcagaca
aactaccattggggagcttatgcccaaatttcctccacggctattagggc
ctggaaggcgctctcccgagcaggggaagccactgggcaattaacaaaga
taatccagggacctcaggaatccttctcagattttgtggccagaatgaca
gaggcagcagagcgtatttttggagagtcagagcaagctgcgcctctggt
agaacagctcatctatgagcaagccacaaaggagtgccgagcggccatag
ccccaagaaagaacaaggcttacaagactggctcaggtctgtcgagagct
tgggggaccttctcagcaatgcaggtttagcggctgccatccttcaatcc
aaaccgctccatgggcagaaaatatcagaggacatgtttactgcgaaagc
ttggcattttagaagattgcagagctccagaataacaggagggactcttc
actctttgctctagtgtgggcaagggtatcatagaagccgacagtgtcgt
cttgtgagggatataagggccagatctcccactgtaatgtccattcagct
ttagtgcaacgtaatcgccctggtcagtctccaagatatggtactgattg
tgctcaggaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_117664333_117664769
seq2: B6Ng01-340L06.b_47_483

seq1  GAATTCCAGATCAAATATTGAATGTGAAGCTGTTGTTTCTGTCTTCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATCAAATATTGAATGTGAAGCTGTTGTTTCTGTCTTCTTCT  50

seq1  CCTGGGTCAGAACCTTCAACGCATCAAGTAGGTTTTTCATCTAAAATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTCAGAACCTTCAACGCATCAAGTAGGTTTTTCATCTAAAATCAA  100

seq1  ACAAGTCTATTTGTGAATAATTAGCTCTTGAATGATGAGTGACAGCTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCTATTTGTGAATAATTAGCTCTTGAATGATGAGTGACAGCTAGT  150

seq1  AGGGAAACTTGGAACCCCCTCCCTTCCCTTTAATGAGTTAGCAATTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACTTGGAACCCCCTCCCTTCCCTTTAATGAGTTAGCAATTTTTT  200

seq1  CTTAATTTGATAAGAAATAGCACTATTCAGAGCCTAAAGAACTTGAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTGATAAGAAATAGCACTATTCAGAGCCTAAAGAACTTGAGCAA  250

seq1  TACTGGTGATATTACTTAGTAAACAAGTGACATGATCTTATAAAGTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTGATATTACTTAGTAAACAAGTGACATGATCTTATAAAGTGTAT  300

seq1  TTTATTTTATAAATATAATAATATATATCCACATGAATGATTTAATACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTATAAATATAATAATATATATCCACATGAATGATTTAATACCA  350

seq1  CTGACAGGAAAGATACCTTGCTTAATAGTCCAATAAAGTTTTTTTCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGGAAAGATACCTTGCTTAATAGTCCAATAAAGTTTTTTTCAAGA  400

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  437
      |||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  437