BAC Information

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BAC

Clone NameB6Ng01-340P10
Chromosome14 (Build37)
Map Location 69,722,512 - 69,834,150
singlet/doubletdoublet
Overlap geneEG545808, Nkx2-6, Nkx3-1
Upstream geneNefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082, Stc1
Downstream geneSlc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340P10.bB6Ng01-340P10.g
ACCGA124498GA124499
length1,175801
definitionB6Ng01-340P10.b B6Ng01-340P10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,722,512 - 69,723,660)(69,833,353 - 69,834,150)
sequence
gaattccatgcaattcctcaaaattttggaaaaagcttggaaagtggttt
caagcagtaatctttttcttaataaaatggacgtgatataatggtggccg
gtggttgggcaagagcatgtgataggctgcagctattgacctgaaagcag
tagtaattggtgtgtaggcacctctgtccacactgatgttgccttcccag
cagcataagtgaaaggtgacaggaacatggcaacagggtccccagtagac
ctgccctggacatgtagtgtgactgaaagacagacacctgtagctctgca
caagcagagcccagaaatgcatactgccagattctcaggaaactcagcgt
caccatggccacccaaagcataaacaggaaaaggggctggaaggactacc
cctccaaggcaggattctaaggcctttcacttctgcccctcttgggtttc
ttacttccaagttaaattgactgaggttgcgctacgattctttttcatta
agcaaaaacagatgttcttaggtgatctctgccttaggaaacaaaataga
gaggaatgttttcaaagtattctatcggggctagtgagatggctcggcaa
ggaaacacactgaagacctgagtgtgatccctagacacacacagtaaagg
agaaaactgactcccacatgctgccctctggcaaccatatccatgctgtg
gcacgggtgccccccacatacacacatacaaacaaacgtcattgaagtat
tcttctctatgtttcaatgccagccacatatcacagtgctagtttggatc
tctgttttgaagtacccttactttcctttggctcagttgtctgctctgtg
tcacacatgtagagaaacaccttcaggaagactttgctgagatgtctata
aaaaaatgttttggtcactgaggaatgctaaaggtatgtaactaaatgaa
gcacaggctccttaatatttcccttgcatttcccagcctggaaaagggaa
ttcagaaatggcttgttcgtttctcttataaaaagtcaccatgaagtctt
tctttttcagaaataagacggtcagaagcacgtgccttcttgttcacggt
ggaagaacattgacaccctaactgttttgcattcctttctcttgtgataa
acatgaagacgggatgggaagaaat
gaattcctggtcctccttcttccactcctgagttcacagatccatgacac
cacacctggtctctttggtgttggagataaagcccagggaatcatgaaga
ccaggtgctttccctcttttaatacaccaccacaacaaaacacctctatg
tggcttaaactttaagtttgttgtggacacttcttccccctgtatttctt
ttctgggagtcaccaggagagctggaaaagttctaatttgcccatgggaa
aagaggggaaagagagaatgaaaccaggaggaaagggcagtagagagaat
gaagaatgagagatgctaatgctaagaagaaccagtcagcagcttttctc
taggaagccgacagcacgaagtgtgacttcgcccatctgctattcctcag
ggatgtattgtggccaggctttgtaacctgctatctctccttggtacctc
tgccttcagactttctctgttcccatacactgaacattgcttatcagtga
ctggtccgttgaagatttaattaggtagagggagaaaaaggcagagggag
aaaagggggagggagagagaaaagaatgtaaagggggagaggaaaaagca
gtaagtagaacaatttaagctgcctagaactacgtatagattttatatgt
gtgtggtgatttgataagaatgacacccattggctcccacatttgaatgc
ttggttcccagttagtggaccatttaggaaggattaggaggtgtgtcctt
ggaattggtattggccttgttggaggaagtttgtcacctgtggggtaggc
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_69722512_69723660
seq2: B6Ng01-340P10.b_44_1218

seq1  GAATTCCATGCAATTCCTCAAAATTTTGGAAAAAGCTTGGAAAGTGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCAATTCCTCAAAATTTTGGAAAAAGCTTGGAAAGTGGTTT  50

seq1  CAAGCAGTAATCTTTTTCTTAATAAAATGGACGTGATATAATGGTGGCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGTAATCTTTTTCTTAATAAAATGGACGTGATATAATGGTGGCCG  100

seq1  GTGGTTGGGCAAGAGCATGTGATAGGCTGCAGCTATTGACCTGAAAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGGGCAAGAGCATGTGATAGGCTGCAGCTATTGACCTGAAAGCAG  150

seq1  TAGTAATTGGTGTGTAGGCACCTCTGTCCACACTGATGTTGCCTTCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATTGGTGTGTAGGCACCTCTGTCCACACTGATGTTGCCTTCCCAG  200

seq1  CAGCATAAGTGAAAGGTGACAGGAACATGGCAACAGGGTCCCCAGTAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAAGTGAAAGGTGACAGGAACATGGCAACAGGGTCCCCAGTAGAC  250

seq1  CTGCCCTGGACATGTAGTGTGACTGAAAGACAGACACCTGTAGCTCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGGACATGTAGTGTGACTGAAAGACAGACACCTGTAGCTCTGCA  300

seq1  CAAGCAGAGCCCAGAAATGCATACTGCCAGATTCTCAGGAAACTCAGCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGAGCCCAGAAATGCATACTGCCAGATTCTCAGGAAACTCAGCGT  350

seq1  CACCATGGCCACCCAAAGCATAAACAGGAAAAGGGGCTGGAAGGACTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGGCCACCCAAAGCATAAACAGGAAAAGGGGCTGGAAGGACTACC  400

seq1  CCTCCAAGGCAGGATTCTAAGGCCTTTCACTTCTGCCCCTCTTGGGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAGGCAGGATTCTAAGGCCTTTCACTTCTGCCCCTCTTGGGTTTC  450

seq1  TTACTTCCAAGTTAAATTGACTGAGGTTGCGCTACGATTCTTTTTCATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCCAAGTTAAATTGACTGAGGTTGCGCTACGATTCTTTTTCATTA  500

seq1  AGCAAAAACAGATGTTCTTAGGTGATCTCTGCCTTAGGAAACAAAATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAACAGATGTTCTTAGGTGATCTCTGCCTTAGGAAACAAAATAGA  550

seq1  GAGGAATGTTTTCAAAGTATTCTATCGGGGCTAGTGAGATGGCTCGGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATGTTTTCAAAGTATTCTATCGGGGCTAGTGAGATGGCTCGGCAA  600

seq1  GGAAACACACTGAAGACCTGAGTGTGATCCCTAGACACACACAGTAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACACTGAAGACCTGAGTGTGATCCCTAGACACACACAGTAAAGG  650

seq1  AGAAAACTGACTCCCACATGCTGCCCTCTGGCAACCATATCCATGCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTGACTCCCACATGCTGCCCTCTGGCAACCATATCCATGCTGTG  700

seq1  GCACGGGTGCCCCCCACATACACACATACAAACAAACGTCATTGAAGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGGTGCCCCCCACATACACACATACAAACAAACGTCATTGAAGTAT  750

seq1  TCTTCTCTATGTTTCAATGCCAGCCACATATCACAGTGCTAGTTTGGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTATGTTTCAATGCCAGCCACATATCACAGTGCTAGTTTGGATC  800

seq1  TCTGTTTTGAAGTACCCTTACTTTCCTTTGGCTCAGTTGTCTGCTCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTGAAGTACCCTTACTTTCCTTTGGCTCAGTTGTCTGCTCTGTG  850

seq1  TCACACATGTAGAGAAACACCTTCAGGAAGAC-TTGCTGAGATGTCTAT-  898
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  TCACACATGTAGAGAAACACCTTCAGGAAGACTTTGCTGAGATGTCTATA  900

seq1  AAAAAATGTTTTGGTCACTGAGGAATGCTAAAGGTATGTAACT-AATGAA  947
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAAAAATGTTTTGGTCACTGAGGAATGCTAAAGGTATGTAACTAAATGAA  950

seq1  GCACAGGCTCCTTAATA-TTCCCCTGCA-TTCCCAGCCT-GAAAAGGGAA  994
      ||||||||||||||||| ||||| |||| |||||||||| ||||||||||
seq2  GCACAGGCTCCTTAATATTTCCCTTGCATTTCCCAGCCTGGAAAAGGGAA  1000

seq1  TTCAGAAATGGCT--GTCGTTTCTC-TATAAAAAGTCACCATGAAGTCTT  1041
      |||||||||||||   ||||||||| ||||||||||||||||||||||||
seq2  TTCAGAAATGGCTTGTTCGTTTCTCTTATAAAAAGTCACCATGAAGTCTT  1050

seq1  --CTTTTCAG-AATAAGACGGTCCAGAGCACGTGCCT--CTGGTCAC-GT  1085
         ||||||| ||||||||||||   |||||||||||   || |||| ||
seq2  TCTTTTTCAGAAATAAGACGGTCAGAAGCACGTGCCTTCTTGTTCACGGT  1100

seq1  G--AG-ACATTGACACC--TACTG--TTGCAT--CCTTCTC-TGTGATAA  1125
      |  || |||||||||||   ||||  ||||||  | ||||| ||||||||
seq2  GGAAGAACATTGACACCCTAACTGTTTTGCATTCCTTTCTCTTGTGATAA  1150

seq1  ACATGAAGAC-GGAGTGGAAGAAAT  1149
      |||||||||| |||  |||||||||
seq2  ACATGAAGACGGGATGGGAAGAAAT  1175

seq1: chr14_69833353_69834150
seq2: B6Ng01-340P10.g_65_865 (reverse)

seq1  TGCCTA-CCCACA-GTGACAAACTTCCTCCAACAAGGCC-ATACCAATTC  47
      |||||| |||||| ||||||||||||||||||||||||| ||||||||||
seq2  TGCCTACCCCACAGGTGACAAACTTCCTCCAACAAGGCCAATACCAATTC  50

seq1  CAAGGACACACCTCCTAATCCTTCCTAAATGGTCCACTAACTGGGAACCA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACACACCTCCTAATCCTTCCTAAATGGTCCACTAACTGGGAACCA  100

seq1  AGCATTCAAATGTGGGAGCCAATGGGTGTCATTCTTATCAAATCACCACA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCAAATGTGGGAGCCAATGGGTGTCATTCTTATCAAATCACCACA  150

seq1  CACATATAAAATCTATACGTAGTTCTAGGCAGCTTAAATTGTTCTACTTA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATAAAATCTATACGTAGTTCTAGGCAGCTTAAATTGTTCTACTTA  200

seq1  CTGCTTTTTCCTCTCCCCCTTTACATTCTTTTCTCTCTCCCTCCCCCTTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTTCCTCTCCCCCTTTACATTCTTTTCTCTCTCCCTCCCCCTTT  250

seq1  TCTCCCTCTGCCTTTTTCTCCCTCTACCTAATTAAATCTTCAACGGACCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCTGCCTTTTTCTCCCTCTACCTAATTAAATCTTCAACGGACCA  300

seq1  GTCACTGATAAGCAATGTTCAGTGTATGGGAACAGAGAAAGTCTGAAGGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGATAAGCAATGTTCAGTGTATGGGAACAGAGAAAGTCTGAAGGC  350

seq1  AGAGGTACCAAGGAGAGATAGCAGGTTACAAAGCCTGGCCACAATACATC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTACCAAGGAGAGATAGCAGGTTACAAAGCCTGGCCACAATACATC  400

seq1  CCTGAGGAATAGCAGATGGGCGAAGTCACACTTCGTGCTGTCGGCTTCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGAATAGCAGATGGGCGAAGTCACACTTCGTGCTGTCGGCTTCCT  450

seq1  AGAGAAAAGCTGCTGACTGGTTCTTCTTAGCATTAGCATCTCTCATTCTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAGCTGCTGACTGGTTCTTCTTAGCATTAGCATCTCTCATTCTT  500

seq1  CATTCTCTCTACTGCCCTTTCCTCCTGGTTTCATTCTCTCTTTCCCCTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTCTACTGCCCTTTCCTCCTGGTTTCATTCTCTCTTTCCCCTCT  550

seq1  TTTCCCATGGGCAAATTAGAACTTTTCCAGCTCTCCTGGTGACTCCCAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCATGGGCAAATTAGAACTTTTCCAGCTCTCCTGGTGACTCCCAGA  600

seq1  AAAGAAATACAGGGGGAAGAAGTGTCCACAACAAACTTAAAGTTTAAGCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATACAGGGGGAAGAAGTGTCCACAACAAACTTAAAGTTTAAGCC  650

seq1  ACATAGAGGTGTTTTGTTGTGGTGGTGTATTAAAAGAGGGAAAGCACCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAGGTGTTTTGTTGTGGTGGTGTATTAAAAGAGGGAAAGCACCTG  700

seq1  GTCTTCATGATTCCCTGGGCTTTATCTCCAACACCAAAGAGACCAGGTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCATGATTCCCTGGGCTTTATCTCCAACACCAAAGAGACCAGGTGT  750

seq1  GGTGTCATGGATCTGTGAACTCAGGAGTGGAAGAAGGAGGACCAGGAATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCATGGATCTGTGAACTCAGGAGTGGAAGAAGGAGGACCAGGAATT  800

seq1  C  798
      |
seq2  C  801