BAC Information

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BAC

Clone NameB6Ng01-341C08
Chromosome14 (Build37)
Map Location 80,787,911 - 80,844,884
singlet/doubletdoublet
Overlap geneLOC672828
Upstream geneNarg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341C08.bB6Ng01-341C08.g
ACCGA124620GA124621
length1,1381,169
definitionB6Ng01-341C08.b B6Ng01-341C08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,843,726 - 80,844,884)(80,787,911 - 80,789,087)
sequence
gaattcacctgtcagcactcagttagttagatgtgtgggagcgaataggc
tagtcctgactggagggggaaaaaagttatagacagctcaagatgaaatt
actaataactaatgtagagaaaattgaaactgtacaggaaaaagtgacat
catcatactgattataggaaactaagccattctccactgtggttgccaat
caacctctgaacctccccccctttcccttctttccttcagggtcatggga
acattatactttttgctttctctttggttggccaaggctcagtaattgat
tctcttgctgacttgggaattaatgtaatacatagctcatcacctgttct
agggattttcctagaaaattctcattaagcaaaaagggacattttagccc
atcagatagacagaaactcttcaggtgacccacatcagatctttaggatt
aaaagatatgtctttgttcctttaattataaataatatttaaatgttacc
cagtgctgttcactgcattataacttagctctccctaaccaatacagtca
ggatcctgctacatggcatcccttagagaacgggagagcagtgagaccag
ggagttagagttgaagcatcctgcttctgagttatatctccatcacttcc
tatctgtggccttaagaaagttacttaacctttccatgccttggtttcct
ataaattagagatgatattaccatttgaaagacacattatgaagattaaa
tgagctaggatagaccaagcatactacaatgccccggagctgccgagagc
actcagttaagattttttaatattaccctttgaaattagttctgattcct
agaccattgctctctatggcactgaccttatcacatcccctgtatttaca
acagctggagatgaaatagcatcatactgcaagaccctttaacctccacc
atcatgctctcctgaccagcacaaactgtcatcagcctataaactaagat
ttcatttccatctgtctctgtactaaatttaaagctaaaagacagaaagt
gctgtatcagcatagagcatcatgacagtgtctatgagatctagagtttc
tagatactgattctagaaatctttctcagtcattattt

gaattcctgtcctgacttccttcagagatggactatagtccagaaatgta
agctgatataaaagtttacctctctaagttgcacttggtcagagagtttt
attcaagcagtgaaaataaaaatagaataaatatcgtattagtgacgaag
agaaggaattcaaagggaaaaaaaggaactaggaagagtagtcacttact
tatccttaggaaatgatgactaactgtaatagttcaccttgggatatata
taagaaggcgtctatgtggctcacaatttaggagtgaaaagtccaagata
atgtggctccatgaacatactttggtgaaagcctccctggctatgcagaa
catggtgaagaaggacaagaaacacagctgactgaagaatgggctaagca
tgtggaccatctcgatttcctaacactctcatcttgagtaccaaccattt
gggagaccaatactagtgccttctcacgaccaggcctctgtgacttttcc
tttgtttctaccatcagcagtctcaccatcttgataccattatagccaca
acagaacttccaggaacatggaactaggcaaggccttctgatctgagaag
aatcagaattaggagaaaacccaggggaatattttgatggtgtttattat
tctaataacacatgaatgccaagggggtgagggaaggggaatttagccat
gatttctgaccattttgacttgagtaacaggagcagaaactagaaaagaa
atccattgtttctggtgtgctgaatttgaagtgcacaacgttttctagga
gaggtatcttatagttatccatcagtctttataaacagtgtgttagtttc
aagctgataatataaacaggcatgatagccctcatttgatggacaacatc
tgaaatttactgaggctagatggcttctcctttatttcagtcacagaggt
taagttgctcaaggccaatatttgttgttctacgattcaaagatccagga
tccaaatggttgttgttactctcttacaaacgtaaagctaagtagttcac
agaatattttatctctcagacaattctctgttttcatcctgatcaagaac
ctaaccatgtatcagaatcttagcagctgccccaaggttatgttgaaata
acctaatgtctggtgcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80843726_80844884
seq2: B6Ng01-341C08.b_45_1182 (reverse)

seq1  AAATAATGGACTGAGAAAGATTTTCTAGGAAATCCAGTATCTAGAAACTC  50
      ||||||| |||||||||||| |||||||  ||| ||||||||||||||||
seq2  AAATAAT-GACTGAGAAAGA-TTTCTAG--AAT-CAGTATCTAGAAACTC  45

seq1  TAGAATCCTCCATTAAGACACTGTCATGATGCTTCTTATTGCTGATACAG  100
      ||| |||   |||  ||||||||||||||||| |||   |||||||||||
seq2  TAG-ATC--TCAT--AGACACTGTCATGATGC-TCT--ATGCTGATACAG  87

seq1  CACTTTTCTGTCCTTTTAGCTTTAAATTTTAAGTAACAGAGGACAGATGG  150
      ||| ||||||| |||||||||||||||||  ||| ||||| |||||||||
seq2  CAC-TTTCTGT-CTTTTAGCTTTAAATTT--AGT-ACAGA-GACAGATGG  131

seq1  AAATTGAAAATCTTAGTTTATAGGCTGATGAACAGTTTGTGCTGGTCAGG  200
      ||||   ||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAT--GAAATCTTAGTTTATAGGCTGATG-ACAGTTTGTGCTGGTCAGG  178

seq1  AGAGCATGATGGTGGAGGTT-AAGGGTCTTGCAGTATGATGCTATTTCAT  249
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGAGCATGATGGTGGAGGTTAAAGGGTCTTGCAGTATGATGCTATTTCAT  228

seq1  CTCCAGCTGTTGTAAATACAGGGGATGTGATAAGGTCAGTGCCATAGAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTGTTGTAAATACAGGGGATGTGATAAGGTCAGTGCCATAGAGA  278

seq1  GCAATGGTCTAGGAATCAGAACTAATTTCAAAGGGTAATATTAAAAAATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGTCTAGGAATCAGAACTAATTTCAAAGGGTAATATTAAAAAATC  328

seq1  TTAACTGAGTGCTCTCGGCAGCTCCGGGGCATTGTAGTATGCTTGGTCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGAGTGCTCTCGGCAGCTCCGGGGCATTGTAGTATGCTTGGTCTA  378

seq1  TCCTAGCTCATTTAATCTTCATAATGTGTCTTTCAAATGGTAATATCATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCTCATTTAATCTTCATAATGTGTCTTTCAAATGGTAATATCATC  428

seq1  TCTAATTTATAGGAAACCAAGGCATGGAAAGGTTAAGTAACTTTCTTAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTATAGGAAACCAAGGCATGGAAAGGTTAAGTAACTTTCTTAAG  478

seq1  GCCACAGATAGGAAGTGATGGAGATATAACTCAGAAGCAGGATGCTTCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGATAGGAAGTGATGGAGATATAACTCAGAAGCAGGATGCTTCAA  528

seq1  CTCTAACTCCCTGGTCTCACTGCTCTCCCGTTCTCTAAGGGATGCCATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACTCCCTGGTCTCACTGCTCTCCCGTTCTCTAAGGGATGCCATGT  578

seq1  AGCAGGATCCTGACTGTATTGGTTAGGGAGAGCTAAGTTATAATGCAGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGATCCTGACTGTATTGGTTAGGGAGAGCTAAGTTATAATGCAGTG  628

seq1  AACAGCACTGGGTAACATTTAAATATTATTTATAATTAAAGGAACAAAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCACTGGGTAACATTTAAATATTATTTATAATTAAAGGAACAAAGA  678

seq1  CATATCTTTTAATCCTAAAGATCTGATGTGGGTCACCTGAAGAGTTTCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTTTTAATCCTAAAGATCTGATGTGGGTCACCTGAAGAGTTTCTG  728

seq1  TCTATCTGATGGGCTAAAATGTCCCTTTTTGCTTAATGAGAATTTTCTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTGATGGGCTAAAATGTCCCTTTTTGCTTAATGAGAATTTTCTAG  778

seq1  GAAAATCCCTAGAACAGGTGATGAGCTATGTATTACATTAATTCCCAAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCCCTAGAACAGGTGATGAGCTATGTATTACATTAATTCCCAAGT  828

seq1  CAGCAAGAGAATCAATTACTGAGCCTTGGCCAACCAAAGAGAAAGCAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGAGAATCAATTACTGAGCCTTGGCCAACCAAAGAGAAAGCAAAA  878

seq1  AGTATAATGTTCCCATGACCCTGAAGGAAAGAAGGGAAAGGGGGGGAGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAATGTTCCCATGACCCTGAAGGAAAGAAGGGAAAGGGGGGGAGGT  928

seq1  TCAGAGGTTGATTGGCAACCACAGTGGAGAATGGCTTAGTTTCCTATAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGTTGATTGGCAACCACAGTGGAGAATGGCTTAGTTTCCTATAAT  978

seq1  CAGTATGATGATGTCACTTTTTCCTGTACAGTTTCAATTTTCTCTACATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGATGATGTCACTTTTTCCTGTACAGTTTCAATTTTCTCTACATT  1028

seq1  AGTTATTAGTAATTTCATCTTGAGCTGTCTATAACTTTTTTCCCCCTCCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTAGTAATTTCATCTTGAGCTGTCTATAACTTTTTTCCCCCTCCA  1078

seq1  GTCAGGACTAGCCTATTCGCTCCCACACATCTAACTAACTGAGTGCTGAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGACTAGCCTATTCGCTCCCACACATCTAACTAACTGAGTGCTGAC  1128

seq1  AGGTGAATTC  1159
      ||||||||||
seq2  AGGTGAATTC  1138


seq1: chr14_80787911_80789087
seq2: B6Ng01-341C08.g_68_1236

seq1  GAATTCCTGTCCTGACTTCCTTCAGAGATGGACTATAGTCCAGAAATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCCTGACTTCCTTCAGAGATGGACTATAGTCCAGAAATGTA  50

seq1  AGCTGATATAAAAGTTTACCTCTCTAAGTTGCACTTGGTCAGAGAGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATATAAAAGTTTACCTCTCTAAGTTGCACTTGGTCAGAGAGTTTT  100

seq1  ATTCAAGCAGTGAAAATAAAAATAGAATAAATATCGTATTAGTGACGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGCAGTGAAAATAAAAATAGAATAAATATCGTATTAGTGACGAAG  150

seq1  AGAAGGAATTCAAAGGGAAAAAAAGGAACTAGGAAGAGTAGTCACTTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAATTCAAAGGGAAAAAAAGGAACTAGGAAGAGTAGTCACTTACT  200

seq1  TATCCTTAGGAAATGATGACTAACTGTAATAGTTCACCTTGGGATATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTAGGAAATGATGACTAACTGTAATAGTTCACCTTGGGATATATA  250

seq1  TAAGAAGGCGTCTATGTGGCTCACAATTTAGGAGTGAAAAGTCCAAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGGCGTCTATGTGGCTCACAATTTAGGAGTGAAAAGTCCAAGATA  300

seq1  ATGTGGCTCCATGAACATACTTTGGTGAAAGCCTCCCTGGCTATGCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCTCCATGAACATACTTTGGTGAAAGCCTCCCTGGCTATGCAGAA  350

seq1  CATGGTGAAGAAGGACAAGAAACACAGCTGACTGAAGAATGGGCTAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGAAGAAGGACAAGAAACACAGCTGACTGAAGAATGGGCTAAGCA  400

seq1  TGTGGACCATCTCGATTTCCTAACACTCTCATCTTGAGTACCAACCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACCATCTCGATTTCCTAACACTCTCATCTTGAGTACCAACCATTT  450

seq1  GGGAGACCAATACTAGTGCCTTCTCACGACCAGGCCTCTGTGACTTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACCAATACTAGTGCCTTCTCACGACCAGGCCTCTGTGACTTTTCC  500

seq1  TTTGTTTCTACCATCAGCAGTCTCACCATCTTGATACCATTATAGCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTACCATCAGCAGTCTCACCATCTTGATACCATTATAGCCACA  550

seq1  ACAGAACTTCCAGGAACATGGAACTAGGCAAGGCCTTCTGATCTGAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTTCCAGGAACATGGAACTAGGCAAGGCCTTCTGATCTGAGAAG  600

seq1  AATCAGAATTAGGAGAAAACCCAGGGGAATATTTTGATGGTGTTTATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAATTAGGAGAAAACCCAGGGGAATATTTTGATGGTGTTTATTAT  650

seq1  TCTAATAACACATGAATGCCAAGGGGGTGAGGGAAGGGGAATTTAGCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAACACATGAATGCCAAGGGGGTGAGGGAAGGGGAATTTAGCCAT  700

seq1  GATTTCTGACCATTTTGACTTGAGTAACAGGAGCAGAAACTAGAAAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGACCATTTTGACTTGAGTAACAGGAGCAGAAACTAGAAAAGAA  750

seq1  ATCCATTGTTTCTGGTGTGCTGAATTTGAAGTGCACAACGTTTTCTAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTGTTTCTGGTGTGCTGAATTTGAAGTGCACAACGTTTTCTAGGA  800

seq1  GAGGTATCTTATAGTTATCCATCAGTCTTTATAAACAGTGTGTTAGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATCTTATAGTTATCCATCAGTCTTTATAAACAGTGTGTTAGTTTC  850

seq1  AAGCTGATAATATAAACAGGCATGATAGCCCTCATTTGATGGACAACATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGATAATATAAACAGGCATGATAGCCCTCATTTGATGGACAACATC  900

seq1  TGAAATTTACTGAGGCTAGATGGCTTCTCCTTTATTTCAGTCACAGAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTACTGAGGCTAGATGGCTTCTCCTTTATTTCAGTCACAGAGGT  950

seq1  TAAGTTGCTCAAGGCCAATATTTGTTGTTCTACGATTCAAAGATCCAAGG  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAAGTTGCTCAAGGCCAATATTTGTTGTTCTACGATTCAAAGATCC-AGG  999

seq1  ATCCAAATGGTTGTTGTTACTCTCTTACAAACGTAAAGCTAAAGTAGTTC  1050
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATCCAAATGGTTGTTGTTACTCTCTTACAAACGTAAAGCT-AAGTAGTTC  1048

seq1  ACAGAATA-TTTATCTCTCAGGACAAATTCTCTGTTTTCATCCTGATCAG  1099
      |||||||| ||||||||||| ||| |||||||||||||||||||||||| 
seq2  ACAGAATATTTTATCTCTCA-GAC-AATTCTCTGTTTTCATCCTGATCAA  1096

seq1  GA--CTACACATGTATCAGATTCTTAGCAGCTGCCCACAGTGTTAATGTT  1147
      ||  |||  ||||||||||| ||||||||||||||| ||  ||| ||| |
seq2  GAACCTAACCATGTATCAGAATCTTAGCAGCTGCCC-CAAGGTT-ATG-T  1143

seq1  TGAAATAACACTAATGTCCTGGTTTGCTTC  1177
      ||||||||| ||||||| ||||  ||||||
seq2  TGAAATAAC-CTAATGT-CTGG--TGCTTC  1169


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