BAC Information

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BAC

Clone NameB6Ng01-341D05
Chromosome14 (Build37)
Map Location 115,210,164 - 115,421,763
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC382947, LOC668791, LOC100043821, LOC100043521
Downstream geneGpc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341D05.bB6Ng01-341D05.g
ACCGA124658GA124659
length1,0911,063
definitionB6Ng01-341D05.b B6Ng01-341D05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,210,164 - 115,211,271)(115,420,713 - 115,421,763)
sequence
gaattccaaacagacagtggggaaaacagtgctatccctactgagatggg
ctgtatttgaaaggtaatggtgtaacattaaaatcaaatcagaacctaat
gagttaattatttagacttccaaatcatggttctcagctttcgtttctct
aacattccatcctaaattgtttctataacttttaaacagctttacaatag
gaaattaatctttacttttcattgagtcttgggaataattagttgtcgta
agaattaataattatttattctgagtcataggctttttgcattggattcc
attcttacaggggatgttagtttaggtgtgcttaaagaacttagcattga
gaaactcataatgtatagctgggaactagaagctatttgctgcacacaga
cttatggtttggataacaggataacagggtagctctgagaaatgtattac
tgagacgttagttattttgtgaacactacagagtacactcacatagactt
atagggccaggaagttacctagtaatctcaggagaacacccatgtgtaga
gagtcagtccttgatggaaatggcaggcagcacttgaccccattcatata
aaagcaaattatttcataacaatatttttattggatattttctttattta
catttcaaattttatgccctttctcagttcccccaggaacccccatccca
ccccctccccctgcttctttctatgagggtgctccccacccacccactcc
cacctcccaatcctggccttcccctacactggggcatcaagccttcacaa
gaccaagggcctctcctttcactgatgcccaacaagtccatcctctacta
catatgctgccagagccatgggtccctccatgcatactcttggggtcccc
aatggaggagctagagaaatgactgaggagctgaaggggttgcaccccat
agggaaaacaacaatatcaaccaaacagactcccctagagtcgcaggtct
accacctccaacaatattttaatcatttattcttttaggatcaatactcc
tccttctcctcctcctcctactctcaatatgcatcttacct

gaattcaaggccaacgtgcgttacagagtgaggctctgacaaaactaaaa
ggaaacactaggtgtagggaattggttctagagggggaaaattacaaaaa
caaacaaacaaataaataaatttcttctctcctaacgtgacatttcagac
aatgaatgagaataacttctaatcgaccttcactctcaccccacttgaag
gaactgacccagtaatcacatagcgtgcacaccatgtgaacaggtcaagc
ttcccctcggtggaaagaaaaggactctgctgccagctatcaagagatgt
aaatgagccgcgcgtatcgacatagggggttacacgttaagtgttttaag
tgtgcggaattccagctttccactagtagatgaaacagtgcgactcgtcc
tgccccatgtgactttcgcttactacaaaaggctttgaattgtccacact
ttaggtttttggttttgtgccacggcattttatgaaattgtgtccatcac
ggggtaagatattcaacactcatgttggagatgtgtggatgaaagtgaaa
acttgaattcttccaatttcaaaggaaaaatacaaacacgttcatattta
aggtttgtttgaggccagttttaagattgagggatgaaccttggggaggt
gaagaataaggtgaccattcaaaaggtatggtacaggctatttcaaattc
tccatacccaccctgacacaggtgtgcatgtcaattttcaactttatcat
gtctcttttttgagtaagatcttcttaagctatactgatatgtattgccg
tcttctgtagtctaatctgattctgatacatttagataaattacattaga
attagtttctctctggggtttactctgaacatcacacatttcacttttac
atttgattattggttgggaaaaaaataaaagaagctgggtgaacagatgg
tgaaatcaatcaaaaacggctgccactttgttaacattatgtggctacat
ttcttatggtttgttgtgaaaattgtataataccaaactaataaactaaa
tgtggtgacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_115210164_115211271
seq2: B6Ng01-341D05.b_50_1140

seq1  GAATTCCAAACAGACAGTGGGGAAAACAGTGCTATCCCTACTGAGATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACAGACAGTGGGGAAAACAGTGCTATCCCTACTGAGATGGG  50

seq1  CTGTATTTGAAAGGTAATGGTGTAACATTAAAATCAAATCAGAACCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTGAAAGGTAATGGTGTAACATTAAAATCAAATCAGAACCTAAT  100

seq1  GAGTTAATTATTTAGACTTCCAAATCATGGTTCTCAGCTTTCGTTTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAATTATTTAGACTTCCAAATCATGGTTCTCAGCTTTCGTTTCTCT  150

seq1  AACATTCCATCCTAAATTGTTTCTATAACTTTTAAACAGCTTTACAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCCATCCTAAATTGTTTCTATAACTTTTAAACAGCTTTACAATAG  200

seq1  GAAATTAATCTTTACTTTTCATTGAGTCTTGGGAATAATTAGTTGTCGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAATCTTTACTTTTCATTGAGTCTTGGGAATAATTAGTTGTCGTA  250

seq1  AGAATTAATAATTATTTATTCTGAGTCATAGGCTTTTTGCATTGGATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAATAATTATTTATTCTGAGTCATAGGCTTTTTGCATTGGATTCC  300

seq1  ATTCTTACAGGGGATGTTAGTTTAGGTGTGCTTAAAGAACTTAGCATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTACAGGGGATGTTAGTTTAGGTGTGCTTAAAGAACTTAGCATTGA  350

seq1  GAAACTCATAATGTATAGCTGGGAACTAGAAGCTATTTGCTGCACACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCATAATGTATAGCTGGGAACTAGAAGCTATTTGCTGCACACAGA  400

seq1  CTTATGGTTTGGATAACAGGATAACAGGGTAGCTCTGAGAAATGTATTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGTTTGGATAACAGGATAACAGGGTAGCTCTGAGAAATGTATTAC  450

seq1  TGAGACGTTAGTTATTTTGTGAACACTACAGAGTACACTCACATAGACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACGTTAGTTATTTTGTGAACACTACAGAGTACACTCACATAGACTT  500

seq1  ATAGGGCCAGGAAGTTACCTAGTAATCTCAGGAGAACACCCATGTGTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGCCAGGAAGTTACCTAGTAATCTCAGGAGAACACCCATGTGTAGA  550

seq1  GAGTCAGTCCTTGATGGAAATGGCAGGCAGCACTTGACCCCATTCATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGTCCTTGATGGAAATGGCAGGCAGCACTTGACCCCATTCATATA  600

seq1  AAAGCAAATTATTTCATAACAATATTTTTATTGGATATTTTCTTTATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAATTATTTCATAACAATATTTTTATTGGATATTTTCTTTATTTA  650

seq1  CATTTCAAATTTTATGCCCTTTCTCAGTTCCCCCAGGAACCCCCATCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAAATTTTATGCCCTTTCTCAGTTCCCCCAGGAACCCCCATCCCA  700

seq1  CCCCCTCCCCCTGCTTCTTTCTATGAGGGTGCTCCCCACCCACCCACTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCCCCTGCTTCTTTCTATGAGGGTGCTCCCCACCCACCCACTCC  750

seq1  CACCTCCCAATCCTGGCCTTCCCCTACACTGGGGCATCAAGCCTTCACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCCAATCCTGGCCTTCCCCTACACTGGGGCATCAAGCCTTCACAA  800

seq1  GACCAAGGGCCTCTCCTTTCACTGATGCCCAACAAGTCCATCCTCTACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGGGCCTCTCCTTTCACTGATGCCCAACAAGTCCATCCTCTACTA  850

seq1  CATATGCTGCCAGAGCCATGGGTCCCTCCATGCATACTCTTGGGGTCCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCTGCCAGAGCCATGGGTCCCTCCATGCATACTCTTGGGGTCCCC  900

seq1  AATGGAGGAGCTAGAGAAATGACTGAAGGAGCTGAAGGGGGTTGCAACCC  950
      ||||||||||||||||||||||||| |||||||||| |||||||| ||||
seq2  AATGGAGGAGCTAGAGAAATGACTG-AGGAGCTGAA-GGGGTTGC-ACCC  947

seq1  CATAGGGAAAACAACAATATCAACCAAACAGACTCCCCTAGAGCTCGCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATAGGGAAAACAACAATATCAACCAAACAGACTCCCCTAGAG-TCGCAG  996

seq1  GTTCTA-CACCTCCAAACAATAATTTTTAATCATTTATTTTCTTTTTATG  1049
      | |||| ||||||| |||||||  |||||||||||||||    ||||| |
seq2  G-TCTACCACCTCC-AACAATA--TTTTAATCATTTATT---CTTTTAGG  1039

seq1  ATCATATTACTTCTTCCTTCTCTCTTCTCCCTCCTACCTCTCCAATATGC  1099
      |||  | ||| || |||||||| || || ||||||| |||| ||||||||
seq2  ATC--AATAC-TCCTCCTTCTC-CTCCT-CCTCCTA-CTCT-CAATATGC  1082

seq1  ATCTTACCT  1108
      |||||||||
seq2  ATCTTACCT  1091


seq1: chr14_115420713_115421763
seq2: B6Ng01-341D05.g_67_1129 (reverse)

seq1  TTTTGT-----TATTTAG-------GTTTGGTA-TATACAATTTTTCACA  37
      ||||||      ||||||       |||||||| ||||||| ||||||||
seq2  TTTTGTCACCACATTTAGTTTATTAGTTTGGTATTATACAA-TTTTCACA  49

seq1  ACAAAACATAAGAAATGTAGCCACATAAATGTTTAACAAAGTGGCAGCCG  87
      ||||| |||||||||||||||||||| |||| ||||||||||||||||||
seq2  ACAAACCATAAGAAATGTAGCCACAT-AATG-TTAACAAAGTGGCAGCCG  97

seq1  TTTTTGATTGATTTTCACCATCTGTTCA-CCAGCTTCTTTTATTTTTTTC  136
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  TTTTTGATTGA-TTTCACCATCTGTTCACCCAGCTTCTTTTATTTTTTTC  146

seq1  CCAACCAATAATCAAATGTAAAAGTG-AATGTGTTGATGTTCAGAGTAAA  185
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  CCAACCAATAATCAAATGTAAAAGTGAAATGTG-TGATGTTCAGAGTAAA  195

seq1  -CCCAGAGAGAAACTAATTCTAATGTAATTTATCTAAATGTATCAGAATC  234
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAGAGAAACTAATTCTAATGTAATTTATCTAAATGTATCAGAATC  245

seq1  AGATTAGACTACAGAAGACGGCAATACATATCAGTATAGCTTAAGAAGAT  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGACTACAGAAGACGGCAATACATATCAGTATAGCTTAAGAAGAT  295

seq1  CTTACTC-AAAAAGAGACATGATAAAGTTGAAAATTGACATGCACACCTG  333
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCAAAAAAGAGACATGATAAAGTTGAAAATTGACATGCACACCTG  345

seq1  TGTCAGGGTGGGTATGGAGAATTTGAAATAGCCTGTACCATACCTTTTGA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGGTGGGTATGGAGAATTTGAAATAGCCTGTACCATACCTTTTGA  395

seq1  ATGGTCACCTTATTCTTCACCTCCCCAAGGTTCATCCCTCAATCTTAAAA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCACCTTATTCTTCACCTCCCCAAGGTTCATCCCTCAATCTTAAAA  445

seq1  CTGGCCTCAAACAAACCTTAAATATGAACGTGTTTGTATTTTTCCTTTGA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCAAACAAACCTTAAATATGAACGTGTTTGTATTTTTCCTTTGA  495

seq1  AATTGGAAGAATTCAAGTTTTCACTTTCATCCACACATCTCCAACATGAG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAAGAATTCAAGTTTTCACTTTCATCCACACATCTCCAACATGAG  545

seq1  TGTTGAATATCTTACCCCGTGATGGACACAATTTCATAAAATGCCGTGGC  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAATATCTTACCCCGTGATGGACACAATTTCATAAAATGCCGTGGC  595

seq1  ACAAAACCAAAAACCTAAAGTGTGGACAATTCAAAGCCTTTTGTAGTAAG  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCAAAAACCTAAAGTGTGGACAATTCAAAGCCTTTTGTAGTAAG  645

seq1  CGAAAGTCACATGGGGCAGGACGAGTCGCACTGTTTCATCTACTAGTGGA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGTCACATGGGGCAGGACGAGTCGCACTGTTTCATCTACTAGTGGA  695

seq1  AAGCTGGAATTCCGCACACTTAAAACACTTAACGTGTAACCCCCTATGTC  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGAATTCCGCACACTTAAAACACTTAACGTGTAACCCCCTATGTC  745

seq1  GATACGCGCGGCTCATTTACATCTCTTGATAGCTGGCAGCAGAGTCCTTT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACGCGCGGCTCATTTACATCTCTTGATAGCTGGCAGCAGAGTCCTTT  795

seq1  TCTTTCCACCGAGGGGAAGCTTGACCTGTTCACATGGTGTGCACGCTATG  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCACCGAGGGGAAGCTTGACCTGTTCACATGGTGTGCACGCTATG  845

seq1  TGATTACTGGGTCAGTTCCTTCAAGTGGGGTGAGAGTGAAGGTCGATTAG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACTGGGTCAGTTCCTTCAAGTGGGGTGAGAGTGAAGGTCGATTAG  895

seq1  AAGTTATTCTCATTCATTGTCTGAAATGTCACGTTAGGAGAGAAGAAATT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATTCTCATTCATTGTCTGAAATGTCACGTTAGGAGAGAAGAAATT  945

seq1  TATTTATTTGTTTGTTTGTTTTTGTAATTTTCCCCCTCTAGAACCAATTC  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTGTTTGTTTGTTTTTGTAATTTTCCCCCTCTAGAACCAATTC  995

seq1  CCTACACCTAGTGTTTCCTTTTAGTTTTGTCAGAGCCTCACTCTGTAACG  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACCTAGTGTTTCCTTTTAGTTTTGTCAGAGCCTCACTCTGTAACG  1045

seq1  CACGTTGGCCTTGAATTC  1051
      ||||||||||||||||||
seq2  CACGTTGGCCTTGAATTC  1063


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