BAC Information

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BAC

Clone NameB6Ng01-341H09
Chromosome14 (Build37)
Map Location 96,419,607 - 96,551,889
singlet/doubletdoublet
Overlap geneKlhl1
Upstream geneLOC677613, LOC100043784, LOC382931, 4921530L21Rik
Downstream geneLOC100043366, LOC668654
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341H09.bB6Ng01-341H09.g
ACCGA124836GA124837
length1,1741,091
definitionB6Ng01-341H09.b B6Ng01-341H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,419,607 - 96,420,782)(96,550,813 - 96,551,889)
sequence
gaattcactagaaagccagcctaaccaataatacgaagggcatcagctcc
agtaagagatcctgtcattaaaaaatatctatgaaagaaatagaagccat
tgacacagtcctctgacctttaaatgcctttgtacacacagataagtgca
tctgtggacccacatgcatgtaataaacaaacattcatgcaacacacatg
gatacacacacactcataaaacatacttgtacacacaaaagaagtagaaa
tataacgctctttgaaccagattaacttagtattgacttaaagatcttta
tttcacctctttcgaagaacagttccttgaattcaaatacctatcttcct
gtgttctaatggtaaaaggaaaggctcattatctttagaagttctgttcc
agattgtatgaaatatagcataccttatacaaactgattacagaaaggaa
taattttaactacatggaagaatcacacaaataaaaacaaagtagtaaac
attaattttaaacacttaaacataatatagagaacttgattaattcctaa
gatatacatttactctagaaaatattgatctccttatataaaaacaaaaa
gcagatcactcaatcaaaccaaggtgattttaattaaagcagaaactatt
caagaagcttctttgagaaacagtatctataagctcttaaggtaatatct
ttttctaatcaactgatttatttgtttccattccaaatgctgcctgcctc
cttgtccctccttcacataaccctcctccctttcagctctgcctctgagg
atcaagtctgtgcaagattagcttcatcatctcttgctgagacaggacaa
tgcagcccactgctctatatgtgcctcggcctcagaccaacccctgggtg
ctctttggttggtagcttagtctctgagaactcccagagatccaggttag
ttgacactattagtcctcctgtagggttcccataccctccaaggcctaca
attctttccccagctctctctagagtctcaacttcatcaatatttgactt
atgggtacctgcatcttgttttggtcatctactggagatccttctcaaga
gaaacattattgctaggcttctgtctgtttagtggagatataagccataa
tggagatacatacttgtgtacttg

gaattcctatgtgtattgaccatgttgatgtagagggccttgatctatgg
tgtcctccatcccctctggctcttatactctttctgtatcttccccgtgg
ttcactgagccctgatggcaagattagagtgagaaatactatttcagtag
agtgttcttagttttctcagtacctctgtgggtataatttgacactctaa
ataccatgttttttacagattttgattttgtctatcttgttcttaccctt
tcatatgctatgaaagccctggtttgtttgcctctttgttttctagacag
aaagaaaggaaagagaggggagaggggtgtagttgagtggtcgacaaagg
gagaaggatctagaaaagagtggggccaggaaaaccatcatcagaatatg
ttgcataaaaatacttattttcaataaaagaatacgaaagaaaaatctct
aaaatacaaaagtaattattttataattttggttcatattattttaggat
aaggacacaatatgaaacttaacttcctaacatattttcactgtatactg
tactattgctaactccacacccattgttttatgtttccctgcaatgtctt
aggagtaactgtactggaagggcctatctatgcagtgggaggccatgacg
gctggagctatctgaacacagtggaaaggtgggatccccagagccagcag
tggacatatgtagccagtatgtccattgctcggagcacggttggagtagc
agcactgaatggaaagtgagtagatatttcctgtgatgttcttatagtta
agaagaaaataaatgtgtggtagtatttaagaataatctttaataatggg
cattgtgtgccttaccatagataataaccaaaatttggtatataattgac
taatcaagaattattaagtatgtggttatgagaatattcctatactttga
gaataattattaagtagccttccgaaaattacctaaagggttggaggtta
cctggggatttttctttatagactgactgtaccatttcatcctccacttt
cccatgctgcctcttcctatcaaagctttaattagggaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_96419607_96420782
seq2: B6Ng01-341H09.b_50_1223

seq1  GAATTCACTAGAAAGCCAGCCTAACCAATAATACGAAGGGCATCAGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGAAAGCCAGCCTAACCAATAATACGAAGGGCATCAGCTCC  50

seq1  AGTAAGAGATCCTGTCATTAAAAAATATCTATGAAAGAAATAGAAGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAGATCCTGTCATTAAAAAATATCTATGAAAGAAATAGAAGCCAT  100

seq1  TGACACAGTCCTCTGACCTTTAAATGCCTTTGTACACACAGATAAGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAGTCCTCTGACCTTTAAATGCCTTTGTACACACAGATAAGTGCA  150

seq1  TCTGTGGACCCACATGCATGTAATAAACAAACATTCATGCAACACACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGACCCACATGCATGTAATAAACAAACATTCATGCAACACACATG  200

seq1  GATACACACACACTCATAAAACATACTTGTACACACAAAAGAAGTAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACACACACTCATAAAACATACTTGTACACACAAAAGAAGTAGAAA  250

seq1  TATAACGCTCTTTGAACCAGATTAACTTAGTATTGACTTAAAGATCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACGCTCTTTGAACCAGATTAACTTAGTATTGACTTAAAGATCTTTA  300

seq1  TTTCACCTCTTTCGAAGAACAGTTCCTTGAATTCAAATACCTATCTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCTCTTTCGAAGAACAGTTCCTTGAATTCAAATACCTATCTTCCT  350

seq1  GTGTTCTAATGGTAAAAGGAAAGGCTCATTATCTTTAGAAGTTCTGTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTAATGGTAAAAGGAAAGGCTCATTATCTTTAGAAGTTCTGTTCC  400

seq1  AGATTGTATGAAATATAGCATACCTTATACAAACTGATTACAGAAAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTATGAAATATAGCATACCTTATACAAACTGATTACAGAAAGGAA  450

seq1  TAATTTTAACTACATGGAAGAATCACACAAATAAAAACAAAGTAGTAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAACTACATGGAAGAATCACACAAATAAAAACAAAGTAGTAAAC  500

seq1  ATTAATTTTAAACACTTAAACATAATATAGAGAACTTGATTAATTCCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTTAAACACTTAAACATAATATAGAGAACTTGATTAATTCCTAA  550

seq1  GATATACATTTACTCTAGAAAATATTGATCTCCTTATATAAAAACAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACATTTACTCTAGAAAATATTGATCTCCTTATATAAAAACAAAAA  600

seq1  GCAGATCACTCAATCAAACCAAGGTGATTTTAATTAAAGCAGAAACTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCACTCAATCAAACCAAGGTGATTTTAATTAAAGCAGAAACTATT  650

seq1  CAAGAAGCTTCTTTGAGAAACAGTATCTATAAGCTCTTAAGGTAATATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGCTTCTTTGAGAAACAGTATCTATAAGCTCTTAAGGTAATATCT  700

seq1  TTTTCTAATCAACTGATTTATTTGTTTCCATTCCAAATGCTGCCTGCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAATCAACTGATTTATTTGTTTCCATTCCAAATGCTGCCTGCCTC  750

seq1  CTTGTCCCTCCTTCACATAACCCTCCTCCCTTTCAGCTCTGCCTCTGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCCTCCTTCACATAACCCTCCTCCCTTTCAGCTCTGCCTCTGAGG  800

seq1  ATCAAGTCTGTGCAAGATTAGCTTCATCATCTCTTGCTGAGACAGGACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTCTGTGCAAGATTAGCTTCATCATCTCTTGCTGAGACAGGACAA  850

seq1  TGCAGCCCACTGCTCTATATGTGCCTCGGCCTCAGACCAACCCCTGGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCCACTGCTCTATATGTGCCTCGGCCTCAGACCAACCCCTGGGTG  900

seq1  CTCTTTGGTTGGTAGCTTAGTCTCTGAGAACTCCCAGAGATCCAGGTTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGGTTGGTAGCTTAGTCTCTGAGAACTCCCAGAGATCCAGGTTAG  950

seq1  TTGACACTATTAGTCCTCCTGTAGGGTTCCCATACCCTCCAAGGCCTACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACTATTAGTCCTCCTGTAGGGTTCCCATACCCTCCAAGGCCTACA  1000

seq1  ATTCTTTCCCCAGCTCTTCTTCTAAGAGTCTCCAACTTCCATCCAATATT  1050
      |||||||||||||||||   ||| ||||||| |||||| ||| |||||||
seq2  ATTCTTTCCCCAGCTCT--CTCT-AGAGTCT-CAACTT-CAT-CAATATT  1044

seq1  TGAC-TATGGGTACCTGCATC-TGTTTTGGTCATCTACTGGGAAGATCC-  1097
      |||| |||||||||||||||| |||||||||||||||||||  |||||| 
seq2  TGACTTATGGGTACCTGCATCTTGTTTTGGTCATCTACTGG--AGATCCT  1092

seq1  TCTC-AGAGAACAATTA-TGCTAGGCTTCTGTCTGTTTAGTGGAG-TATA  1144
      |||| ||||||  |||| ||||||||||||||||||||||||||| ||||
seq2  TCTCAAGAGAAACATTATTGCTAGGCTTCTGTCTGTTTAGTGGAGATATA  1142

seq1  AAGCATAATGGAGTATCATAATTGTGTACTTG  1176
      |  ||||||||||   |||| |||||||||||
seq2  AGCCATAATGGAGATACATACTTGTGTACTTG  1174


seq1: chr14_96550813_96551889
seq2: B6Ng01-341H09.g_66_1156 (reverse)

seq1  AATT-CCTAATTTAAGCTTTGATAGGA--AGGCAGC-TGGAAAAGTGGA-  45
      |||| ||||||| ||||||||||||||  ||||||| ||| |||||||| 
seq2  AATTCCCTAATTAAAGCTTTGATAGGAAGAGGCAGCATGGGAAAGTGGAG  50

seq1  GATGAAATGGTACAGTCAGTC-ATAAAGAAAAATCAC--AGTAAACTTCA  92
      ||||||||||||||||||||| ||||||||||||| |   |||| || ||
seq2  GATGAAATGGTACAGTCAGTCTATAAAGAAAAATCCCCAGGTAACCTCCA  100

seq1  AACCTTTA-GTAATTTTCTGAAGGCTACTTAATAATTATTCTCAAAGTAT  141
      | |||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  ACCCTTTAGGTAATTTTCGGAAGGCTACTTAATAATTATTCTCAAAGTAT  150

seq1  AGAAATATTCTCATAA-CACATACTTAATAATTCTTGGATTAGTCATTTA  190
      || ||||||||||||| ||||||||||||||||||| ||||||||| |||
seq2  AGGAATATTCTCATAACCACATACTTAATAATTCTT-GATTAGTCAATTA  199

seq1  TATA-CAAATTTTGGTTATTATCTATGGTAA-GCACAC-ATG-CCATTAT  236
      |||| |||||||||||||||||||||||||| |||||| ||| |||||||
seq2  TATACCAAATTTTGGTTATTATCTATGGTAAGGCACACAATGCCCATTAT  249

seq1  TAAAGATTATTCTTAAATACTACCACACATTTATTTTCTTCTTAACTATA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATTATTCTTAAATACTACCACACATTTATTTTCTTCTTAACTATA  299

seq1  AGAACATCACAGG-AATATCTACTCACTTTCCATTCAGTGCTGCTACTCC  335
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGAACATCACAGGAAATATCTACTCACTTTCCATTCAGTGCTGCTACTCC  349

seq1  AACCGTGCTCCGAGCAATGGACATACTGGCTACATATGTCCACTGCTGGC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTGCTCCGAGCAATGGACATACTGGCTACATATGTCCACTGCTGGC  399

seq1  TCTGGGGATCCCACCTTTCCACTGTGTTCAGATAGCTCCAGCCGTCATGG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGATCCCACCTTTCCACTGTGTTCAGATAGCTCCAGCCGTCATGG  449

seq1  CCTCCCACTGCATAGATAGGCCCTTCCAGTACAGTTACTCCTAAGACATT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACTGCATAGATAGGCCCTTCCAGTACAGTTACTCCTAAGACATT  499

seq1  GCAGGGAAACATAAAACAATGGGTGTGGAGTTAGCAATAGTACAGTATAC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAAACATAAAACAATGGGTGTGGAGTTAGCAATAGTACAGTATAC  549

seq1  AGTGAAAATATGTTAGGAAGTTAAGTTTCATATTGTGTCCTTATCCTAAA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAATATGTTAGGAAGTTAAGTTTCATATTGTGTCCTTATCCTAAA  599

seq1  ATAATATGAACCAAAATTATAAAATAATTACTTTTGTATTTTAGAGATTT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATGAACCAAAATTATAAAATAATTACTTTTGTATTTTAGAGATTT  649

seq1  TTCTTTCGTATTCTTTTATTGAAAATAAGTATTTTTATGCAACATATTCT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCGTATTCTTTTATTGAAAATAAGTATTTTTATGCAACATATTCT  699

seq1  GATGATGGTTTTCCTGGCCCCACTCTTTTCTAGATCCTTCTCCCTTTGTC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGGTTTTCCTGGCCCCACTCTTTTCTAGATCCTTCTCCCTTTGTC  749

seq1  GACCACTCAACTACACCCCTCTCCCCTCTCTTTCCTTTCTTTCTGTCTAG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTCAACTACACCCCTCTCCCCTCTCTTTCCTTTCTTTCTGTCTAG  799

seq1  AAAACAAAGAGGCAAACAAACCAGGGCTTTCATAGCATATGAAAGGGTAA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGAGGCAAACAAACCAGGGCTTTCATAGCATATGAAAGGGTAA  849

seq1  GAACAAGATAGACAAAATCAAAATCTGTAAAAAACATGGTATTTAGAGTG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGATAGACAAAATCAAAATCTGTAAAAAACATGGTATTTAGAGTG  899

seq1  TCAAATTATACCCACAGAGGTACTGAGAAAACTAAGAACACTCTACTGAA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTATACCCACAGAGGTACTGAGAAAACTAAGAACACTCTACTGAA  949

seq1  ATAGTATTTCTCACTCTAATCTTGCCATCAGGGCTCAGTGAACCACGGGG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATTTCTCACTCTAATCTTGCCATCAGGGCTCAGTGAACCACGGGG  999

seq1  AAGATACAGAAAGAGTATAAGAGCCAGAGGGGATGGAGGACACCATAGAT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACAGAAAGAGTATAAGAGCCAGAGGGGATGGAGGACACCATAGAT  1049

seq1  CAAGGCCCTCTACATCAACATGGTCAATACACATAGGAATTC  1077
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCCTCTACATCAACATGGTCAATACACATAGGAATTC  1091


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