BAC Information

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BAC

Clone NameB6Ng01-341L22
Chromosome14 (Build37)
Map Location 109,539,055 - 109,687,941
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341L22.bB6Ng01-341L22.g
ACCGA125040GA125041
length3491,078
definitionB6Ng01-341L22.b B6Ng01-341L22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,687,593 - 109,687,941)(109,539,055 - 109,540,135)
sequence
atatgaatgctcaaaagtaaacctgtttcatagacagcaattttacttca
tagagtaaataatcataatttgatatcctttagtattctctctgacacaa
aactccacttcttgatttcctaaatatataatgtctcagatttctttata
tgtaattcacatgaaattacttcattgcttactatgccagttcaactatg
ctgcctctgcagaggttactcccttctcatatctgctatgaactttgggt
ctctcttctccaattttatactttattccagtttcattatggaaaaatta
tctggcactcaagatagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

gaattcattgctgatgtaagacatgaaattaaagatattcaacatgctca
tgagaagttttgattctgcatctaaatgccagacttagttactagggtac
aattactacctggttttcaatttaaaacaggttggctatgttatttgtag
aatccatggtatctaatcaaccaatcaatcaatcaatcaatctgcctatg
gaggaataattttcggctaatacaatgaaaatttctcagaatttctgtga
aaacaaaattgaaaaaagcatgctgagaaataacagacttttatcctaaa
atgtatttttatatactttaaacacttatacaatctgtttagatgggtta
tttcctatgattactattaataatggtaatgaaataatttaatattgttt
ttctaattattttttaatttcgtggaaaaggaaagccttatgtaaagata
aattggtgagaatttactaaaactgtgctttttcagtagaataataacta
ggtataaaattacagaataaacagaatattcactaaatgctcttgtctta
ccatccatacaattataactcggagaataattgtcatccaatgctttttt
gcttgctacaaaacatttttcttgaaaagaaacaaggggataaataactg
ttttaaatatttgtcttcattcctatacacaaaaatataattaacatgta
ttaaactaccagccgtacacacctctgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgcatgcgcgctcatgcgtatgtatctgtgtgtgtttcacatgagcc
tactgggtgtacaggactaactgcatgtgtgctttcaaatatgccagagg
ttaaaggcctgtgtttttccttcaatgttcttcaccatattttgtcagtt
caatgagactgagagattcatctatactgagtggacaggaagtcataagc
cccttctagtgttgttcttcaccactgtgatgacagtaaacatagtacag
tgtctgcttcattacacggatgctaggataaaaatgaggtcccatgtttc
ttttcccagaaacaatataataaaggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109687593_109687941
seq2: B6Ng01-341L22.b_55_403 (reverse)

seq1  CACACACACACACACACACACACACACACACACTATCTTGAGTGCCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACTATCTTGAGTGCCAGAT  50

seq1  AATTTTTCCATAATGAAACTGGAATAAAGTATAAAATTGGAGAAGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCCATAATGAAACTGGAATAAAGTATAAAATTGGAGAAGAGAGA  100

seq1  CCCAAAGTTCATAGCAGATATGAGAAGGGAGTAACCTCTGCAGAGGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGTTCATAGCAGATATGAGAAGGGAGTAACCTCTGCAGAGGCAGC  150

seq1  ATAGTTGAACTGGCATAGTAAGCAATGAAGTAATTTCATGTGAATTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGAACTGGCATAGTAAGCAATGAAGTAATTTCATGTGAATTACAT  200

seq1  ATAAAGAAATCTGAGACATTATATATTTAGGAAATCAAGAAGTGGAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAATCTGAGACATTATATATTTAGGAAATCAAGAAGTGGAGTTT  250

seq1  TGTGTCAGAGAGAATACTAAAGGATATCAAATTATGATTATTTACTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAGAGAGAATACTAAAGGATATCAAATTATGATTATTTACTCTAT  300

seq1  GAAGTAAAATTGCTGTCTATGAAACAGGTTTACTTTTGAGCATTCATAT  349
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAAATTGCTGTCTATGAAACAGGTTTACTTTTGAGCATTCATAT  349


seq1: chr14_109539055_109540135
seq2: B6Ng01-341L22.g_68_1145

seq1  GAATTCATTGCTGATGTAAGACATGAAATTAAAGATATTCAACATGCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCTGATGTAAGACATGAAATTAAAGATATTCAACATGCTCA  50

seq1  TGAGAAGTTTTGATTCTGCATCTAAATGCCAGACTTAGTTACTAGGGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGTTTTGATTCTGCATCTAAATGCCAGACTTAGTTACTAGGGTAC  100

seq1  AATTACTACCTGGTTTTCAATTTAAAACAGGTTGGCTATGTTATTTGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTACCTGGTTTTCAATTTAAAACAGGTTGGCTATGTTATTTGTAG  150

seq1  AATCCATGGTATCTAATCAACCAATCAATCAATCAATCAATCTGCCTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATGGTATCTAATCAACCAATCAATCAATCAATCAATCTGCCTATG  200

seq1  GAGGAATAATTTTCGGCTAATACAATGAAAATTTCTCAGAATTTCTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATAATTTTCGGCTAATACAATGAAAATTTCTCAGAATTTCTGTGA  250

seq1  AAACAAAATTGAAAAAAGCATGCTGAGAAATAACAGACTTTTATCCTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAATTGAAAAAAGCATGCTGAGAAATAACAGACTTTTATCCTAAA  300

seq1  ATGTATTTTTATATACTTTAAACACTTATACAATCTGTTTAGATGGGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTTTATATACTTTAAACACTTATACAATCTGTTTAGATGGGTTA  350

seq1  TTTCCTATGATTACTATTAATAATGGTAATGAAATAATTTAATATTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATGATTACTATTAATAATGGTAATGAAATAATTTAATATTGTTT  400

seq1  TTCTAATTATTTTTTAATTTCGTGGAAAAGGAAAGCCTTATGTAAAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATTATTTTTTAATTTCGTGGAAAAGGAAAGCCTTATGTAAAGATA  450

seq1  AATTGGTGAGAATTTACTAAAACTGTGCTTTTTCAGTAGAATAATAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTGAGAATTTACTAAAACTGTGCTTTTTCAGTAGAATAATAACTA  500

seq1  GGTATAAAATTACAGAATAAACAGAATATTCACTAAATGCTCTTGTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAAAATTACAGAATAAACAGAATATTCACTAAATGCTCTTGTCTTA  550

seq1  CCATCCATACAATTATAACTCGGAGAATAATTGTCATCCAATGCTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCATACAATTATAACTCGGAGAATAATTGTCATCCAATGCTTTTTT  600

seq1  GCTTGCTACAAAACATTTTTCTTGAAAAGAAACAAGGGGATAAATAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTACAAAACATTTTTCTTGAAAAGAAACAAGGGGATAAATAACTG  650

seq1  TTTTAAATATTTGTCTTCATTCCTATACACAAAAATATAATTAACATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATATTTGTCTTCATTCCTATACACAAAAATATAATTAACATGTA  700

seq1  TTAAACTACCAGCCGTACACACCTCTGTGTGTGTGTGTGTGTGTGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTACCAGCCGTACACACCTCTGTGTGTGTGTGTGTGTGTGTGTGT  750

seq1  GTGTGCATGCGCGCTCATGCGTATGTATCTGTGTGTGTTTCACATGAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATGCGCGCTCATGCGTATGTATCTGTGTGTGTTTCACATGAGCC  800

seq1  TACT-GGTGTACAGGACTAACTGCATGTGTGCTTTCAAATATGCCAGAGG  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGTGTACAGGACTAACTGCATGTGTGCTTTCAAATATGCCAGAGG  850

seq1  TT-AAGGCCTGTG-TTTTCCTCAATTGTTCTTCACCATATTTTGTCAGTT  897
      || |||||||||| |||||||  | |||||||||||||||||||||||||
seq2  TTAAAGGCCTGTGTTTTTCCTTCAATGTTCTTCACCATATTTTGTCAGTT  900

seq1  CAATGAGAACTGAGAGATTCATCTATACTGAGTGGACAGAAAGTCATAAG  947
      ||||||| ||||||||||||||||||||||||||||||| ||||||||||
seq2  CAATGAG-ACTGAGAGATTCATCTATACTGAGTGGACAGGAAGTCATAAG  949

seq1  CCCCTTCTAGTGTTTGTTTCTTCACCACTGTGATGACAGTAAACATAGTA  997
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  CCCCTTCTAGTGTT--GTTCTTCACCACTGTGATGACAGTAAACATAGTA  997

seq1  CAGTGTCTGCCTTCATTACACGGATGCTAGGGATAAAAAATGAGGTTCTC  1047
      ||||||||| ||||||||||||||||||| |||| |||||||||| || |
seq2  CAGTGTCTG-CTTCATTACACGGATGCTA-GGAT-AAAAATGAGG-TCCC  1043

seq1  ATGTTTTCCTTTTCCCCAGA---CATATAAT-AAGGTT  1081
      ||||||  ||||| ||||||    ||||||| ||||||
seq2  ATGTTT--CTTTT-CCCAGAAACAATATAATAAAGGTT  1078


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