BAC Information

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BAC

Clone NameB6Ng01-342J12
Chromosome14 (Build37)
Map Location 99,110,015 - 99,239,400
singlet/doubletdoublet
Overlap geneLOC619716
Upstream geneDach1, LOC635593
Downstream geneLOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342J12.bB6Ng01-342J12.g
ACCGA125630GA125631
length1,2011,110
definitionB6Ng01-342J12.b B6Ng01-342J12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,110,015 - 99,111,230)(99,238,266 - 99,239,400)
sequence
gaattcattgtttttaataactgagttgtattgtgtaaatgtagcacatt
ttctgtatccattcctctgttgagggacatctgggttctttccagcttct
gactattataaataaggctgctatgaacatagtggagcatgtgtccttat
tacatgttggagtatcttctgggtagtatagctgagttctcaggtaatac
tatgtccaggtttctgaggaaccaccaaactaatttacagaggagttgta
ccagcttgcaatcccaccaacaatggaggagtgttcctctttcatggaag
ccattccttaattgaggttcccccattgaacataactttggcaagccagc
agtcttttcttatctttgccaatgtgagtgtcgaatgtcatccactcacc
ttcagctaaccttctctcccagtataacttttaaaaatagaaacaaaaga
gaaatggcttctagtttaattcttaaaaaccacagtttgttacttaacat
gagcaagaatatagaaaacaatatatttattaatttaatatccaatcaaa
acttgaaagtttttacatttaaagatttccatctggcactgggaaagctg
ctggcattaggggttcattaaagtcatttacaaaagacactaaatgaaaa
tattaaggaagaaagcactttggattttctctttgaagatggagaaaata
aaccagctttactaagaatattaggttattaagagatataaataaatatc
tatttgagcattcattcaaagtggcatcacattcctcagagggccacctc
tgattctgaaagcaatctcaaactgagaacctttagtgcccttcagggag
tttattggtgatttggaacttattcctgattctctaataaaagacataca
aattttccttaatcttctttaaggactagagtggccttcaaaaaaccaaa
catgtgtacttttcaagcaaaattctccttgtatgctgtcaccatctctg
ttggcacgggataatttggggcttcactatagatataaataattacggac
ttgtatctcatacagtatgaaagctagcgatcatgttttgtctagcagca
gcacacatgttctccaccatgtgtgtgagaacaggtttttgtgaatgaat
gaatatggccctttcggatacattttaatgattgtgagtccaaccaacat
t

gaattctcttgagataaatgcagatttttttccccctttggtgataggtg
ctccaccatgcaattgaagaggctaaacatggatgaagtgttctcttcaa
gggaacctgcgggaataggtggtctcactaagccacaagggcaaaacgaa
acgacacctttgccgtttgccactgcccagaaaactccactctgacattt
cattttacttcggcaaacaaccaccatgaaaaatagccaggtacattaca
ggatatgcccttacgcatgatattttgtatcagatatatcagtcacattg
caaaggacttagatcaacttaaaaaaataaaacccaatagaatgattaca
gccgctgcctagaatgacaagtattatcaacaaaaattaatcaggcgcat
cttttagtgaactcaattaataatgtgcaacaacagggtctcttttctta
agatgaaaattaattagtggagggaaggtcactcggagatgctgacatca
ctcatcagaatgctctggcagctctaattatttgtcttccaggcttgggt
gatcagaaattattgcaatacctgagcaacattttgaaaaagctttgtgc
atggctcttttaattagacctggtatttgattaatgcggtggaagccttt
agatcagcctcttatcattgagtgacttagaagttttagggaattatact
gtgtaagacagggtcactgaaggggtttggaatctatacgtttttattat
taaaagagttataatgttaaatttgatttatccttttctctttcaagccc
cttcttttattaccaagcatgataatagatgggatagaatttcattaatt
tttattttaaacgttttctttttctttctttttcttttctttcttcttct
ttcttctttcttcttttttttttcctcttttgcctctcgatacagtaact
tgcttggggtttggactgagattcatttgaaatcatctaggattttgtat
aggagcatctaaaaggtgactaacattattgtcaaatctcacgtacatga
tactttagctcctttctttattcagacttgcagcctcacatgttacctag
agaaatagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_99110015_99111230
seq2: B6Ng01-342J12.b_48_1248

seq1  GAATTCATTGTTTTTAATAACTGAGTTGTATTGTGTAAATGTAGCACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTTTTAATAACTGAGTTGTATTGTGTAAATGTAGCACATT  50

seq1  TTCTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCT  100

seq1  GACTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTAT  150

seq1  TACATGTTGGAGTATCTTCTGGGTAGTATAGCTGAGTTCTCAGGTAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTTGGAGTATCTTCTGGGTAGTATAGCTGAGTTCTCAGGTAATAC  200

seq1  TATGTCCAGGTTTCTGAGGAACCACCAAACTAATTTACAGAGGAGTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCAGGTTTCTGAGGAACCACCAAACTAATTTACAGAGGAGTTGTA  250

seq1  CCAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCATGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCATGGAAG  300

seq1  CCATTCCTTAATTGAGGTTCCCCCATTGAACATAACTTTGGCAAGCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCTTAATTGAGGTTCCCCCATTGAACATAACTTTGGCAAGCCAGC  350

seq1  AGTCTTTTCTTATCTTTGCCAATGTGAGTGTCGAATGTCATCCACTCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTTCTTATCTTTGCCAATGTGAGTGTCGAATGTCATCCACTCACC  400

seq1  TTCAGCTAACCTTCTCTCCCAGTATAACTTTTAAAAATAGAAACAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTAACCTTCTCTCCCAGTATAACTTTTAAAAATAGAAACAAAAGA  450

seq1  GAAATGGCTTCTAGTTTAATTCTTAAAAACCACAGTTTGTTACTTAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGCTTCTAGTTTAATTCTTAAAAACCACAGTTTGTTACTTAACAT  500

seq1  GAGCAAGAATATAGAAAACAATATATTTATTAATTTAATATCCAATCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGAATATAGAAAACAATATATTTATTAATTTAATATCCAATCAAA  550

seq1  ACTTGAAAGTTTTTACATTTAAAGATTTCCATCTGGCACTGGGAAAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAAGTTTTTACATTTAAAGATTTCCATCTGGCACTGGGAAAGCTG  600

seq1  CTGGCATTAGGGGTTCATTAAAGTCATTTACAAAAGACACTAAATGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATTAGGGGTTCATTAAAGTCATTTACAAAAGACACTAAATGAAAA  650

seq1  TATTAAGGAAGAAAGCACTTTGGATTTTCTCTTTGAAGATGGAGAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGGAAGAAAGCACTTTGGATTTTCTCTTTGAAGATGGAGAAAATA  700

seq1  AACCAGCTTTACTAAGAATATTAGGTTATTAAGAGATATAAATAAATATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCTTTACTAAGAATATTAGGTTATTAAGAGATATAAATAAATATC  750

seq1  TATTTGAGCATTCATTCAAAGTGGCATCACATTCCTCAGAGGGCCACCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAGCATTCATTCAAAGTGGCATCACATTCCTCAGAGGGCCACCTC  800

seq1  TGATTCTGAAAGCAATCTCAAACTGAGAACCTTTAGTGCCCTTCAGGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTGAAAGCAATCTCAAACTGAGAACCTTTAGTGCCCTTCAGGGAG  850

seq1  TTTATTGGTGATTTGGAACTTATTCCTGATTCTCTAAATAAAAGACATAC  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTATTGGTGATTTGGAACTTATTCCTGATTCTCT-AATAAAAGACATAC  899

seq1  AAAATTTTCCTTAATCTTCTTTAAGGACTAGAGTGGCCTTCAAAAAACCA  950
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAATTTTCCTTAATCTTCTTTAAGGACTAGAGTGGCCTTCAAAAAACCA  948

seq1  AACATGTGTACTTTTCAAGCAAAATTCTCCTTGTATGCTGTCACCATCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AACATGTGTACTTTTCAAGCAAAATTCTCCTTGTATGCTGTCACCATCT-  997

seq1  CCTTGTTGGCACGGGATAATTT-GGGCTTCACTTATAGAATAATAAATAA  1049
         ||||||||||||||||||| ||||||||| ||||||   ||||||||
seq2  --CTGTTGGCACGGGATAATTTGGGGCTTCAC-TATAGA--TATAAATAA  1042

seq1  ATACAGACTTGTATCTCATAACAGTATGGAAAGCTAGCAGATCATTGTTT  1099
       ||| |||||||||||||| ||||||| |||||||||| ||||| |||||
seq2  TTACGGACTTGTATCTCAT-ACAGTAT-GAAAGCTAGC-GATCA-TGTTT  1088

seq1  TGTCTAAGCAGCAGCAACACATG-TCTCCA-CAT-TGTGTGAG-ACA-GT  1144
      ||||| ||||||||| ||||||| |||||| ||| |||||||| ||| ||
seq2  TGTCT-AGCAGCAGC-ACACATGTTCTCCACCATGTGTGTGAGAACAGGT  1136

seq1  TTTTGTGGAATGGAATGAATAT-GCCTCTTCTGATAACATTTTTTAAATG  1193
      |||||| |||| |||||||||| |||  ||| ||| |||||||   ||||
seq2  TTTTGT-GAAT-GAATGAATATGGCCCTTTCGGAT-ACATTTT---AATG  1180

seq1  ATTTGTGAAGTCAAACCAACATT  1216
      | ||||| |||| ||||||||||
seq2  A-TTGTG-AGTCCAACCAACATT  1201


seq1: chr14_99238266_99239400
seq2: B6Ng01-342J12.g_68_1177 (reverse)

seq1  GTCTATTTCTCTAGTTACATTGTGAGGCTGCAATGTCTGAATACAGAA--  48
      |||||||||||||| ||   ||||||||||||| ||||||||| ||||  
seq2  GTCTATTTCTCTAGGTAACATGTGAGGCTGCAA-GTCTGAATAAAGAAAG  49

seq1  GAGCCTAAAGTATTCATGGTTAACGTTGAGATTTGAC-ATAATGTTTAAG  97
      ||| |||||||| |||||    ||| ||||||||||| ||||||||  ||
seq2  GAG-CTAAAGTA-TCATG---TACG-TGAGATTTGACAATAATGTT--AG  91

seq1  TTCACTTTTTAGATGCTTCCCTATACAAAATCCTAGATGATTTTCAAATT  147
       |||| |||||||||||  ||||||||||||||||||||| ||||||| |
seq2  -TCACCTTTTAGATGCT--CCTATACAAAATCCTAGATGA-TTTCAAA-T  136

seq1  GAATTCTCAGTTCCAAAACCCCAAGCAAGTTACTGTAATCGAGAGGCAAA  197
      ||| |||||||  | ||||||||||||||||||||| |||||||||||||
seq2  GAA-TCTCAGT--CCAAACCCCAAGCAAGTTACTGT-ATCGAGAGGCAAA  182

seq1  AGAGGAAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAA  247
      |||||||||||||||   ||||||| |||||||||   ||||||| ||||
seq2  AGAGGAAAAAAAAAA--GAAGAAAG-AAGAAAGAA--GAAGAAAG-AAAA  226

seq1  GAAAAAAGAAAAGAAAAAAGAAAAACGTTTAAAATAAAAATTAATGAAAT  297
      ||||||   |||||||||   |||||||||||||||||||||||||||||
seq2  GAAAAA--GAAAGAAAAA--GAAAACGTTTAAAATAAAAATTAATGAAAT  272

seq1  TCTATCCCATCTATTATCATGCTTGGTAATAAAAGAAGGGGCTTGAAAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCCATCTATTATCATGCTTGGTAATAAAAGAAGGGGCTTGAAAGA  322

seq1  GAAAAGGATAAATCAAATTTAACATTATAACTCTTTTAATAATAAAAACG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGATAAATCAAATTTAACATTATAACTCTTTTAATAATAAAAACG  372

seq1  TATAGATTCCAAACCCCTTCAGTGACCCTGTCTTACACAGTATAATTCCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATTCCAAACCCCTTCAGTGACCCTGTCTTACACAGTATAATTCCC  422

seq1  TAAAACTTCTAAGTCACTCAATGATAAGAGGCTGATCTAAAGGCTTCCAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTCTAAGTCACTCAATGATAAGAGGCTGATCTAAAGGCTTCCAC  472

seq1  CGCATTAATCAAATACCAGGTCTAATTAAAAGAGCCATGCACAAAGCTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATTAATCAAATACCAGGTCTAATTAAAAGAGCCATGCACAAAGCTTT  522

seq1  TTCAAAATGTTGCTCAGGTATTGCAATAATTTCTGATCACCCAAGCCTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATGTTGCTCAGGTATTGCAATAATTTCTGATCACCCAAGCCTGG  572

seq1  AAGACAAATAATTAGAGCTGCCAGAGCATTCTGATGAGTGATGTCAGCAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAATAATTAGAGCTGCCAGAGCATTCTGATGAGTGATGTCAGCAT  622

seq1  CTCCGAGTGACCTTCCCTCCACTAATTAATTTTCATCTTAAGAAAAGAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGAGTGACCTTCCCTCCACTAATTAATTTTCATCTTAAGAAAAGAGA  672

seq1  CCCTGTTGTTGCACATTATTAATTGAGTTCACTAAAAGATGCGCCTGATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTGTTGCACATTATTAATTGAGTTCACTAAAAGATGCGCCTGATT  722

seq1  AATTTTTGTTGATAATACTTGTCATTCTAGGCAGCGGCTGTAATCATTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGTTGATAATACTTGTCATTCTAGGCAGCGGCTGTAATCATTCT  772

seq1  ATTGGGTTTTATTTTTTTAAGTTGATCTAAGTCCTTTGCAATGTGACTGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTTTTATTTTTTTAAGTTGATCTAAGTCCTTTGCAATGTGACTGA  822

seq1  TATATCTGATACAAAATATCATGCGTAAGGGCATATCCTGTAATGTACCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTGATACAAAATATCATGCGTAAGGGCATATCCTGTAATGTACCT  872

seq1  GGCTATTTTTCATGGTGGTTGTTTGCCGAAGTAAAATGAAATGTCAGAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTTTTCATGGTGGTTGTTTGCCGAAGTAAAATGAAATGTCAGAGT  922

seq1  GGAGTTTTCTGGGCAGTGGCAAACGGCAAAGGTGTCGTTTCGTTTTGCCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTTCTGGGCAGTGGCAAACGGCAAAGGTGTCGTTTCGTTTTGCCC  972

seq1  TTGTGGCTTAGTGAGACCACCTATTCCCGCAGGTTCCCTTGAAGAGAACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCTTAGTGAGACCACCTATTCCCGCAGGTTCCCTTGAAGAGAACA  1022

seq1  CTTCATCCATGTTTAGCCTCTTCAATTGCATGGTGGAGCACCTATCACCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCCATGTTTAGCCTCTTCAATTGCATGGTGGAGCACCTATCACCA  1072

seq1  AAGGGGGAAAAAAATCTGCATTTATCTCAAGAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGAAAAAAATCTGCATTTATCTCAAGAGAATTC  1110


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