BAC Information

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BAC

Clone NameB6Ng01-343M14
Chromosome14 (Build37)
Map Location 121,604,954 - 121,749,058
singlet/doubletdoublet
Overlap geneFarp1, Stk24
Upstream geneMbnl2, Rap2a, LOC668835, LOC668837, Ranbp5, LOC100043837
Downstream geneSlc15a1, LOC100043577, Dock9, LOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2, Tm9sf2, LOC621710, Clybl, 1700108J01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343M14.bB6Ng01-343M14.g
ACCGA126473GA126474
length1,1241,083
definitionB6Ng01-343M14.b B6Ng01-343M14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,747,937 - 121,749,058)(121,604,954 - 121,606,037)
sequence
gaattcattggcagacaaattagccctgggcttcagggatgctcctgcat
gcaattcactaagtaaataagaagccctcatgctgttgaggtatgtcctc
aaatcttgtctctgccagtgtttgcttcaggaagtggtaagggttaggca
gtttgcttcttgatgcgagacccatccctagagaggtaatagtaaagtag
ctacttaaaagtacaatgtaacagatctgacgctacatcgctacattgag
ggctttgtgaggaagggtgttattacatcaacagaagcaaccactgtact
tcacggcaatctgcagtccaaggaattttcattcctttggaggcaggatc
ttgtgtgtaggttgaccttgaacttgaaatcctccttggagttcacagct
gtgcaccactgcctgtctcagggcaccacagatactgtgtttccggttgc
ttagaggaagaacagatgtaaaaagtgtgtttaagtcttcaagtttcaga
tcacagcaaagcagctcttcctcctctggacatatatgctctcaccctat
accaggtatttttccagaagcaggagagagaaggcccaggaaaaggcatt
tgcccttagggatcctgtggtcttgttgtataaagatggatcaaatgcag
ttttctttaaaatagctttgctgagatgcatttatgctccaggacgccca
cttcagatgtgcaattcagagactgtactgagaacgtgaccaaaggatgt
acctgtcttaactccctctccgttccatcacagctccgtgcagtctgtct
cacatctcaacccaaagaccacagcatgtctactttatatgttgtggctc
tgtaactttgccttcctctggctttttctatgaatggaaacacatgccat
tggctctttccatatagcacggtgatggtgatggttgcgtgtacgtgtct
cagttgttctgtgtctgtggtcctgggaacggaacctagaactttgtgct
tgctgggtgcttttcataacacttagctacgtcttccaaccctcttgctc
cttttttatcgtaacaggagttcttcagtagttcttacaggccagacagc
ctgatcatcttttgaaacagcagc
gaattctttgggaaatatgagtgcctgccagctgggcagaaaattggcga
atcctaaaacaagcagacagtgttggaagttatgaaacggactgtagtct
ttcttaaaataaagaaataaagaaaaaggaaacgctgtacggcataggaa
ttcttccacagcttcatacccccatggtccgtttttaaaagaatggtttt
ttgttaaggtgtttgaattgtgctggagttaatgaaagaaagaagattcc
aggaaaaaaaaatggcaacccataagcttaatcatgcatcttcttgcatg
ctggtgtgagaagaggagcctagaaccaaggattagtctaagcagaccca
ggtccctgtctgccagcctacctgggaaatgtccgtatgtgtacagcata
ttggaaacagcagagaacagaaccacagtggcagaaggcagggttggtga
cccgtagttcgtggtcctcttttatgtcccttcctttggataagcgtgca
tgggctcgctttatattgggcagaagggagatttctggtagtcacagctc
actcctgctgcctgtgcatgtgacccacggacacaggccagagagctgag
attatccacagaagatgtcgtacacccgcaggtagctgtggctatcttcc
agcttgctctgatggcagccatgggaccataaagcggtgtctgttagagg
aataaaagcgcagaataccccacgctgaaccatctttattggcccctgca
gccttgcaaggacaggctaatgggcacactcattgtacctgtcaggtctc
agccctcaccgtcgtttaatatcgtgagttagttggctcctgttacgtgg
gtattggagaggtaatggaaacataaaaccggtgacttttgcctcccaag
gtttgatgcgtgtggtagagtttgatccatcatagcagcaggaccttagg
aagccatggagttataaagagaaaccaaggcataattctaaatgggttac
tgctcacatcattcccttctcttcacttggtgtacctgggatggaactta
ggtcacttgtcaggcttggtggccaagcccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_121747937_121749058
seq2: B6Ng01-343M14.b_50_1173 (reverse)

seq1  GCTGCTGTT--CAAAGATGAATCAAGGCCTGTCTGGGCTGTA--GACTAC  46
      |||||||||   ||||||| ||||  | |||||||| |||||   |||||
seq2  GCTGCTGTTTCAAAAGATG-ATCA--GGCTGTCTGGCCTGTAAGAACTAC  47

seq1  TG-AGAACCTCTGTTACGATAAAAAAGGAGCAAGAGGGTTGG-AGACGTA  94
      || |||||  |||||||||||||||||||||||||||||||| |||||||
seq2  TGAAGAACTCCTGTTACGATAAAAAAGGAGCAAGAGGGTTGGAAGACGTA  97

seq1  GCTAAGTGTTATGAAAAGCACCCAGCAAGCACAAAGTTCTAGGTTCCGTT  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTGTTATGAAAAGCACCCAGCAAGCACAAAGTTCTAGGTTCCGTT  147

seq1  CCCAGGACCACAGACACAGAAACAACTGAGACACGTACACGCAACCATCA  194
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCAGGACCACAGACACAG-AACAACTGAGACACGTACACGCAACCATCA  196

seq1  CCATCACCGTGCTATATGGAAAGAGCCAATGGCATGTGTTTCCATTCATA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACCGTGCTATATGGAAAGAGCCAATGGCATGTGTTTCCATTCATA  246

seq1  GAAAAAGCCAGAGGAAGGCAAAGTTACAGAGCCACAACATATAAAGTAGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGCCAGAGGAAGGCAAAGTTACAGAGCCACAACATATAAAGTAGA  296

seq1  CATGCTGTGGTCTTTGGGTTGAGATGTGAGACAGACTGCACGGAGCTGTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGTGGTCTTTGGGTTGAGATGTGAGACAGACTGCACGGAGCTGTG  346

seq1  ATGGAACGGAGAGGGAGTTAAGACAGGTACATCCTTTGGTCACGTTCTCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACGGAGAGGGAGTTAAGACAGGTACATCCTTTGGTCACGTTCTCA  396

seq1  GTACAGTCTCTGAATTGCACATCTGAAGTGGGCGTCCTGGAGCATAAATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTCTCTGAATTGCACATCTGAAGTGGGCGTCCTGGAGCATAAATG  446

seq1  CATCTCAGCAAAGCTATTTTAAAGAAAACTGCATTTGATCCATCTTTATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAGCAAAGCTATTTTAAAGAAAACTGCATTTGATCCATCTTTATA  496

seq1  CAACAAGACCACAGGATCCCTAAGGGCAAATGCCTTTTCCTGGGCCTTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGACCACAGGATCCCTAAGGGCAAATGCCTTTTCCTGGGCCTTCT  546

seq1  CTCTCCTGCTTCTGGAAAAATACCTGGTATAGGGTGAGAGCATATATGTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGCTTCTGGAAAAATACCTGGTATAGGGTGAGAGCATATATGTC  596

seq1  CAGAGGAGGAAGAGCTGCTTTGCTGTGATCTGAAACTTGAAGACTTAAAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGGAAGAGCTGCTTTGCTGTGATCTGAAACTTGAAGACTTAAAC  646

seq1  ACACTTTTTACATCTGTTCTTCCTCTAAGCAACCGGAAACACAGTATCTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTTTACATCTGTTCTTCCTCTAAGCAACCGGAAACACAGTATCTG  696

seq1  TGGTGCCCTGAGACAGGCAGTGGTGCACAGCTGTGAACTCCAAGGAGGAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCCTGAGACAGGCAGTGGTGCACAGCTGTGAACTCCAAGGAGGAT  746

seq1  TTCAAGTTCAAGGTCAACCTACACACAAGATCCTGCCTCCAAAGGAATGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTCAAGGTCAACCTACACACAAGATCCTGCCTCCAAAGGAATGA  796

seq1  AAATTCCTTGGACTGCAGATTGCCGTGAAGTACAGTGGTTGCTTCTGTTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTTGGACTGCAGATTGCCGTGAAGTACAGTGGTTGCTTCTGTTG  846

seq1  ATGTAATAACACCCTTCCTCACAAAGCCCTCAATGTAGCGATGTAGCGTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATAACACCCTTCCTCACAAAGCCCTCAATGTAGCGATGTAGCGTC  896

seq1  AGATCTGTTACATTGTACTTTTAAGTAGCTACTTTACTATTACCTCTCTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGTTACATTGTACTTTTAAGTAGCTACTTTACTATTACCTCTCTA  946

seq1  GGGATGGGTCTCGCATCAAGAAGCAAACTGCCTAACCCTTACCACTTCCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGGTCTCGCATCAAGAAGCAAACTGCCTAACCCTTACCACTTCCT  996

seq1  GAAGCAAACACTGGCAGAGACAAGATTTGAGGACATACCTCAACAGCATG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAACACTGGCAGAGACAAGATTTGAGGACATACCTCAACAGCATG  1046

seq1  AGGGCTTCTTATTTACTTAGTGAATTGCATGCAGGAGCATCCCTGAAGCC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTCTTATTTACTTAGTGAATTGCATGCAGGAGCATCCCTGAAGCC  1096

seq1  CAGGGCTAATTTGTCTGCCAATGAATTC  1122
      ||||||||||||||||||||||||||||
seq2  CAGGGCTAATTTGTCTGCCAATGAATTC  1124

seq1: chr14_121604954_121606037
seq2: B6Ng01-343M14.g_66_1148

seq1  GAATTCTTTGGGAAATATGAGTGCCTGCCAGCTGGGCAGAAAATTGGCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGGAAATATGAGTGCCTGCCAGCTGGGCAGAAAATTGGCGA  50

seq1  ATCCTAAAACAAGCAGACAGTGTTGGAAGTTATGAAACGGACTGTAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAAACAAGCAGACAGTGTTGGAAGTTATGAAACGGACTGTAGTCT  100

seq1  TTCTTAAAATAAAGAAATAAAGAAAAAGGAAACGCTGTACGGCATAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAAATAAAGAAATAAAGAAAAAGGAAACGCTGTACGGCATAGGAA  150

seq1  TTCTTCCACAGCTTCATACCCCCATGGTCCGTTTTTAAAAGAATGGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCACAGCTTCATACCCCCATGGTCCGTTTTTAAAAGAATGGTTTT  200

seq1  TTGTTAAGGTGTTTGAATTGTGCTGGAGTTAATGAAAGAAAGAAGATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAGGTGTTTGAATTGTGCTGGAGTTAATGAAAGAAAGAAGATTCC  250

seq1  AGGAAAAAAAAATGGCAACCCATAAGCTTAATCATGCATCTTCTTGCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAAAATGGCAACCCATAAGCTTAATCATGCATCTTCTTGCATG  300

seq1  CTGGTGTGAGAAGAGGAGCCTAGAACCAAGGATTAGTCTAAGCAGACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGAGAAGAGGAGCCTAGAACCAAGGATTAGTCTAAGCAGACCCA  350

seq1  GGTCCCTGTCTGCCAGCCTACCTGGGAAATGTCCGTATGTGTACAGCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTGTCTGCCAGCCTACCTGGGAAATGTCCGTATGTGTACAGCATA  400

seq1  TTGGAAACAGCAGAGAACAGAACCACAGTGGCAGAAGGCAGGGTTGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAACAGCAGAGAACAGAACCACAGTGGCAGAAGGCAGGGTTGGTGA  450

seq1  CCCGTAGTTCGTGGTCCTCTTTTATGTCCCTTCCTTTGGATAAGCGTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTAGTTCGTGGTCCTCTTTTATGTCCCTTCCTTTGGATAAGCGTGCA  500

seq1  TGGGCTCGCTTTATATTGGGCAGAAGGGAGATTTCTGGTAGTCACAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCGCTTTATATTGGGCAGAAGGGAGATTTCTGGTAGTCACAGCTC  550

seq1  ACTCCTGCTGCCTGTGCATGTGACCCACGGACACAGGCCAGAGAGCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGCTGCCTGTGCATGTGACCCACGGACACAGGCCAGAGAGCTGAG  600

seq1  ATTATCCACAGAAGATGTCGTACACCCGCAGGTAGCTGTGGCTATCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCACAGAAGATGTCGTACACCCGCAGGTAGCTGTGGCTATCTTCC  650

seq1  AGCTTGCTCTGATGGCAGCCATGGGACCATAAAGCGGTGTCTGTTAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCTCTGATGGCAGCCATGGGACCATAAAGCGGTGTCTGTTAGAGG  700

seq1  AATAAAAGCGCAGAATACCCCACGCTGAACCATCTTTATTGGCCCCTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGCGCAGAATACCCCACGCTGAACCATCTTTATTGGCCCCTGCA  750

seq1  GCCTTGCAAGGACAGGCTAATGGGCACACTCATTGTACCTGTCAGGTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCAAGGACAGGCTAATGGGCACACTCATTGTACCTGTCAGGTCTC  800

seq1  AGCCCTCACCGTCGTTTAATATCGTGAGTTAGTTGGCTCCTGTTACGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCACCGTCGTTTAATATCGTGAGTTAGTTGGCTCCTGTTACGTGG  850

seq1  GTATTGGAGAGGTAATGGAAACATAAAACCGGTGACTTTTGCCTCCCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGAGAGGTAATGGAAACATAAAACCGGTGACTTTTGCCTCCCAAG  900

seq1  GTTTGATGCGTGTGGTAGAGTTTGATCCATCATAGCAGCAAGACCTTAGG  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTTGATGCGTGTGGTAGAGTTTGATCCATCATAGCAGCAGGACCTTAGG  950

seq1  AAGCCATGGAGTTATAAAGAGAAACCAAGGCATAATTCTAAATGGGTTAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGGAGTTATAAAGAGAAACCAAGGCATAATTCTAAATGGGTTAC  1000

seq1  TGCTCACATCATTCCCTTCTCTTCCACCTTGTGTACCTGGGAATTGAACT  1050
      ||||||||||||||||||||||| ||| | ||||||||||| || |||||
seq2  TGCTCACATCATTCCCTTCTCTT-CACTTGGTGTACCTGGG-ATGGAACT  1048

seq1  TAGGTCACTTGTCAGGCTTGGTGG-CAAGCCCTTT  1084
      |||||||||||||||||||||||| ||||||||||
seq2  TAGGTCACTTGTCAGGCTTGGTGGCCAAGCCCTTT  1083