BAC Information

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BAC

Clone NameB6Ng01-343N14
Chromosome14 (Build37)
Map Location 21,717,543 - 21,846,749
singlet/doubletdoublet
Overlap geneVcl
Upstream geneGng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119
Downstream geneAp3m1, Adk, Myst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343N14.bB6Ng01-343N14.g
ACCGA126515GA126516
length9161,161
definitionB6Ng01-343N14.b B6Ng01-343N14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,717,543 - 21,718,448)(21,845,573 - 21,846,749)
sequence
gaattctatgccctcatgtggtgtgtctgagaacagctactgtgtattca
catatttaaaataaataaataaatcttttattaagacaaagcaaaacaac
aaaagaatagatgggagacagctgggcgtggtggcacacacgtctttaat
cccagcactcaggaggcagaggcaggaggatttctgagtttgaggccagc
ctggtctacagagtgagttccaggacatccagagctatacagagaaaccc
tgtctcgaaaaacaaaacaaaaaacaaaacaaatacaaaaaaaaaaacca
aaaaaccaaaaagaatagatgggagaagccggagcaagggcctcacaagc
tcatcactgcatccctccccatctggccagaaatctgtgttcaccaataa
aaaacagaccagaaaatgcttagggtgcatattaacagttaattccagca
tttctgctgtttcttcttaaaaacaaactttctcttgaaggcctataaat
agaacaagccttactagatgaatatttaagatgagagtcatcagataaaa
gatgtaataataaattacatagacaaagaattaaaatgcattgccaaatc
agctatagggagaaagaagacaaaatctttgataaaatgtgagattaaca
gattggttttagcactaaaacaagaagaagtaaacataaaaaaaaaagca
acaaagaattgttttgcttcaaacaccagtgggaaagtacaagcgattct
tgggggtgttgagtatagctcagtggcagaagatttgcctagcattttat
aagctcctgaattggggtccctacgtggaatgaagagtgggaagagatca
cagtttctggaattgtaaaatttcaatattacctatagatctctcttttt
taaaggatcataaatt
gaattctttggaaagtgacccccatatccttgtattccacaaacataaat
gcaattcagttgggcattagcaaacctattaaacttgtgaagccagtcct
aacaacaaggtgcagacagacaattgcccgcccggctcagactcacagga
cccgcacagataatgagtgatgcaaggtgtcaaggctgcacatggccgga
tgcatttggagcagcccccaactgggggtaccgatcagtaccttactaga
ccacttggtagcttcccggtgcaaggactgagccgcggccagaatgggct
ggttgaccggctgattagatggcattaacagcagctcaggttcgtaatcg
tcttccatgtcagaggggaaagggaacccaacagcatcagccgcatttgc
ctcagctacaactcctatacccacctgagcggctgggatacccggctttg
tcgatggcgggaagggtgagaaacagggatagtgttagtaagaacaacag
gactcgggaacgaagcttcagctggtttagttaccaaagcttgcctggga
tgggaaagaaaatggcatgctctccaggagccatgggaaccaagattcaa
agacaggaactcagcctccaacctaagtctccttgagataagtggagaaa
tttgatccagcaaaatgtttccacagagggcaggggctatatacttgctg
ctgaagttaaatttgaccacaatcacatgtttggggagccaaacaaccca
gtagccattacctttacagagactctagaggagaaaagtgagcacagtca
tgtaagctgtttggaaggaaaaactgagcatcctcctaaatcactattcc
atcatccaggagcacacagctctgcagctcccagactctccttatttcct
tcagggatcagaagttctacgttagaaatggtatgtcaaggtagcaaaca
ggagacaaaagtgagaggtttacaataccctacaccacccagctagctct
aagggcccaagaagacactcatctagtcctagaagcagtgaaacccctac
actcggacttgtctttcctcttaaaatggtctcggagacaactcttccaa
gtatctcactgcagcactgaaaggtgccacgggtaggtacagctaacttc
tctgtgaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_21717543_21718448
seq2: B6Ng01-343N14.b_50_965

seq1  GAATTCTATGCCCTCATGTGGTGTGTCTGAGAACAGCTACTGTGTATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGCCCTCATGTGGTGTGTCTGAGAACAGCTACTGTGTATTCA  50

seq1  CATATTTAAAATAAATAAATAAATCTTTTATTAAGACAAAGCAAAACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTAAAATAAATAAATAAATCTTTTATTAAGACAAAGCAAAACAAC  100

seq1  AAAAGAATAGATGGGAGACAGCTGGGCGTGGTGGCACACACGTCTTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATAGATGGGAGACAGCTGGGCGTGGTGGCACACACGTCTTTAAT  150

seq1  CCCAGCACTCAGGAGGCAGAGGCAGGAGGATTTCTGAGTTTGAGGCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTCAGGAGGCAGAGGCAGGAGGATTTCTGAGTTTGAGGCCAGC  200

seq1  CTGGTCTACAGAGTGAGTTCCAGGACATCCAGAGCTATACAGAGAAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAGAGTGAGTTCCAGGACATCCAGAGCTATACAGAGAAACCC  250

seq1  TGTCTCGAAAAACAAAACAAAAAACAAAACAAATACAAAAAAAAAAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCGAAAAACAAAACAAAAAACAAAACAAATACAAAAAAAAAAACCA  300

seq1  AAAAACCAAAAAGAATAGATGGGAGAAGCCGGAGCAAGGGCCTCACAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAAAAAGAATAGATGGGAGAAGCCGGAGCAAGGGCCTCACAAGC  350

seq1  TCATCACTGCATCCCTCCCCATCTGGCCAGAAATCTGTGTTCACCAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACTGCATCCCTCCCCATCTGGCCAGAAATCTGTGTTCACCAATAA  400

seq1  AAAACAGACCAGAAAATGCTTAGGGTGCATATTAACAGTTAATTCCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGACCAGAAAATGCTTAGGGTGCATATTAACAGTTAATTCCAGCA  450

seq1  TTTCTGCTGTTTCTTCTTAAAAACAAACTTTCTCTTGAAGGCCTATAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTGTTTCTTCTTAAAAACAAACTTTCTCTTGAAGGCCTATAAAT  500

seq1  AGAACAAGCCTTACTAGATGAATATTTAAGATGAGAGTCATCAGATAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAGCCTTACTAGATGAATATTTAAGATGAGAGTCATCAGATAAAA  550

seq1  GATGTAATAATAAATTACATAGACAAAGAATTAAAATGCATTGCCAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAATAATAAATTACATAGACAAAGAATTAAAATGCATTGCCAAATC  600

seq1  AGCTATAGGGAGAAAGAAGACAAAATCTTTGATAAAATGTGAGATTAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAGGGAGAAAGAAGACAAAATCTTTGATAAAATGTGAGATTAACA  650

seq1  GATTGGTTTTAGCACTAAAACAAGAAGAAGTAAACATAAAAAAAAAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTTTTAGCACTAAAACAAGAAGAAGTAAACATAAAAAAAAAAGCA  700

seq1  ACAAAGAATTGTTTTGCTTCAAACACCAGTGGGAAAGTACAAGCGATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAATTGTTTTGCTTCAAACACCAGTGGGAAAGTACAAGCGATTCT  750

seq1  T-GGGGTGTTGAGTATAGCTCAGTGGCAGAAGATTTGCCTAGCA-TTTAT  798
      | |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGGGGGTGTTGAGTATAGCTCAGTGGCAGAAGATTTGCCTAGCATTTTAT  800

seq1  AAGCTCCTGAATT-GGGTCCCTACGTGGAATGAAGAGTGGG-AGAGATCA  846
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  AAGCTCCTGAATTGGGGTCCCTACGTGGAATGAAGAGTGGGAAGAGATCA  850

seq1  CAGTTTCTGG-ATTGT-AAATTTCAATATTA-CTATAGAT-TCTCTTTTT  892
      |||||||||| ||||| |||||||||||||| |||||||| |||||||||
seq2  CAGTTTCTGGAATTGTAAAATTTCAATATTACCTATAGATCTCTCTTTTT  900

seq1  --AAAGATCATAAATT  906
        || |||||||||||
seq2  TAAAGGATCATAAATT  916

seq1: chr14_21845573_21846749
seq2: B6Ng01-343N14.g_66_1226 (reverse)

seq1  GTTTTCAACAAAGGAGAGAGTTAGGCTGTACTTACACGGTGGCA-CTTTC  49
      |||||| |||   |||| ||||| ||||||| ||| | |||||| |||||
seq2  GTTTTC-ACA---GAGA-AGTTA-GCTGTACCTAC-CCGTGGCACCTTTC  43

seq1  AGTTGCTGCAGTGAGATACTTTGGAAGAGTTGTCTCTGAAGACATTTTTA  99
      || |||||||||||||||| |||||||||||||||| | ||||  |||||
seq2  AG-TGCTGCAGTGAGATAC-TTGGAAGAGTTGTCTCCG-AGACCATTTTA  90

seq1  AGGAGGAAGAC-AGTCCGAGGTGTAGGGTTTTCACTGC-TCTAGGAACTA  147
      ||  | ||||| ||||||| |||||||| ||||||||| |||||| ||||
seq2  AGAGGAAAGACAAGTCCGA-GTGTAGGGGTTTCACTGCTTCTAGG-ACTA  138

seq1  GATGAGTGTCTTCTTGGGCCCCTTAGAGCTAGCTGGGTGGTTGTAGGGTA  197
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  GATGAGTGTCTTCTTGGG-CCCTTAGAGCTAGCTGGGTGG-TGTAGGGTA  186

seq1  TTTGGTAAACCTCTTCACTTTTGTCTCCTGGTTTGCTACCTTTGACATAC  247
      ||  ||||||||| ||||||||||||||| |||||||||| |||||||||
seq2  TT--GTAAACCTC-TCACTTTTGTCTCCT-GTTTGCTACC-TTGACATAC  231

seq1  CATTTCTAACGTAGAACTTCTGATCCCTGAAGGAAATAAGGAGAGTCTGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTAACGTAGAACTTCTGATCCCTGAAGGAAATAAGGAGAGTCTGG  281

seq1  GAGCTGCAGAGCTGTGTGCTCCTGGATGATGGAATAGTGATTTAGGAGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCAGAGCTGTGTGCTCCTGGATGATGGAATAGTGATTTAGGAGGA  331

seq1  TGCTCAGTTTTTCCTTCCAAACAGCTTACATGACTGTGCTCACTTTTCTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTTTTTCCTTCCAAACAGCTTACATGACTGTGCTCACTTTTCTC  381

seq1  CTCTAGAGTCTCTGTAAAGGTAATGGCTACTGGGTTGTTTGGCTCCCCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAGTCTCTGTAAAGGTAATGGCTACTGGGTTGTTTGGCTCCCCAA  431

seq1  ACATGTGATTGTGGTCAAATTTAACTTCAGCAGCAAGTATATAGCCCCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGATTGTGGTCAAATTTAACTTCAGCAGCAAGTATATAGCCCCTG  481

seq1  CCCTCTGTGGAAACATTTTGCTGGATCAAATTTCTCCACTTATCTCAAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGTGGAAACATTTTGCTGGATCAAATTTCTCCACTTATCTCAAGG  531

seq1  AGACTTAGGTTGGAGGCTGAGTTCCTGTCTTTGAATCTTGGTTCCCATGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAGGTTGGAGGCTGAGTTCCTGTCTTTGAATCTTGGTTCCCATGG  581

seq1  CTCCTGGAGAGCATGCCATTTTCTTTCCCATCCCAGGCAAGCTTTGGTAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGAGAGCATGCCATTTTCTTTCCCATCCCAGGCAAGCTTTGGTAA  631

seq1  CTAAACCAGCTGAAGCTTCGTTCCCGAGTCCTGTTGTTCTTACTAACACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCAGCTGAAGCTTCGTTCCCGAGTCCTGTTGTTCTTACTAACACT  681

seq1  ATCCCTGTTTCTCACCCTTCCCGCCATCGACAAAGCCGGGTATCCCAGCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGTTTCTCACCCTTCCCGCCATCGACAAAGCCGGGTATCCCAGCC  731

seq1  GCTCAGGTGGGTATAGGAGTTGTAGCTGAGGCAAATGCGGCTGATGCTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGTGGGTATAGGAGTTGTAGCTGAGGCAAATGCGGCTGATGCTGT  781

seq1  TGGGTTCCCTTTCCCCTCTGACATGGAAGACGATTACGAACCTGAGCTGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCCCTTTCCCCTCTGACATGGAAGACGATTACGAACCTGAGCTGC  831

seq1  TGTTAATGCCATCTAATCAGCCGGTCAACCAGCCCATTCTGGCCGCGGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATGCCATCTAATCAGCCGGTCAACCAGCCCATTCTGGCCGCGGCT  881

seq1  CAGTCCTTGCACCGGGAAGCTACCAAGTGGTCTAGTAAGGTACTGATCGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTTGCACCGGGAAGCTACCAAGTGGTCTAGTAAGGTACTGATCGG  931

seq1  TACCCCCAGTTGGGGGCTGCTCCAAATGCATCCGGCCATGTGCAGCCTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCAGTTGGGGGCTGCTCCAAATGCATCCGGCCATGTGCAGCCTTG  981

seq1  ACACCTTGCATCACTCATTATCTGTGCGGGTCCTGTGAGTCTGAGCCGGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTGCATCACTCATTATCTGTGCGGGTCCTGTGAGTCTGAGCCGGG  1031

seq1  CGGGCAATTGTCTGTCTGCACCTTGTTGTTAGGACTGGCTTCACAAGTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCAATTGTCTGTCTGCACCTTGTTGTTAGGACTGGCTTCACAAGTTT  1081

seq1  AATAGGTTTGCTAATGCCCAACTGAATTGCATTTATGTTTGTGGAATACA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTTTGCTAATGCCCAACTGAATTGCATTTATGTTTGTGGAATACA  1131

seq1  AGGATATGGGGGTCACTTTCCAAAGAATTC  1177
      ||||||||||||||||||||||||||||||
seq2  AGGATATGGGGGTCACTTTCCAAAGAATTC  1161