BAC Information

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BAC

Clone NameB6Ng01-344M06
Chromosome14 (Build37)
Map Location 21,251,876 - 21,252,529
singlet/doubletsinglet
Overlap geneTtc18
Upstream gene1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16
Downstream geneAnxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344M06.bB6Ng01-344M06.g
ACCGA127165GA127166
length9861,201
definitionB6Ng01-344M06.b B6Ng01-344M06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaacatttttatatcacttacttaatgctaaaatgataaaatac
tcacccagagcatcttcaggaagaaaaaaggttgatttgtgcatcatggt
gggaagttaggagctgagacgctgatggtgccagggagcagaggcagatg
aaggcttattcagttagagacctcagctctccaagtgccaccaaccacat
tcagtcagtgtgggtctcccttgtgcagttaaacctgtctagaaacatcc
tagggaatatatccagagttggtaaagtcctgccaacttgacgagattaa
ccatttcaattttcagtgtgttagcttatttagacggagtctccctgtgt
agatgaggctaggttgacctcagctctccggcttctgtctagcagtgtta
agattaaaggcatgcaccacctcctcaaacctccccagtggattgtttgg
ttttgaaacagtgtctttctgtatcccagactggcctggaactcgctgtg
tagccctcaaacttgtcctcttgcattagcctctcatttaaaaaaataat
gtttataaagctataaacctaagaaggtttttaaaaaatgaactccctgg
gctggagaggagactcagctcttatgacaagcactgtctctgcttccagg
ggacacttgctcagttctgccacccacatcagacagcttgcgactgccag
gagttccagatctaggtcatccaatgccacccgcaggcactgcactgaca
tacacataacccacacagagacatgcacatgattcaaaataataattaaa
aaaaaatcagtaacgtagccaggcatggtggtggacatctataattcagg
gtctcaggaacttgaaatagaagggttctaagtttgaaaccaagctgggc
tatactagtgaactgtctcacaagcaaacataaagccatctgcctataag
acagatattcactgcctttgttcttgtctctgtctc
gaattcagaacttttcagctggggaacgagagtaccagtgagtacagctt
tacgaggtaagtctgatcttgaactttctaaggaaattcaagacagtcta
tcagaagtaaagtggaaaatgtttggccttgaattttttctagtgttaga
agcccttttgttccttttcacatgttatcaagtggttaaggcagggcgga
ttctggatgaaattcagggcaatctatcagaagtaaagtggggagagaga
gtaggagcaaagagaaaatatggtacacaaaataagtatacaggcctttc
caagggtcttgaacccgaggaaaagttaaggttaggtaggaatacctgga
gagagattagaagaaaaagaggaaaaagggaaaagaagaaagatcaatta
gcggaggtctctaggaaaaggagcctgtgctcatcgctggatgggctcgg
ggagccagctcttagtagctctgaagcagatgaagaattctcctctgaag
aaacagactgggaggaagaagcagctcattatgagaaaaaagggtaccag
ccaggtaaagtgctagctaatcagttaaggaagccaaaagcggctggcga
aggccagtttgctgattggcctcagggcagtcggtttcaaggtccgccct
atgcggagcccccgccctgcgtagtgcgtcagcaatgcgcagagagatgc
gcagagaggcaatgcgcagagagatgcgcagagaggcagtgcgcagagag
gcagtgcgcagagaggcagtgcgcagactcattcattcccagagaggaac
aaaggaaaatacaacaggcatttccggtctttgaaggagccgagggtggg
cgtgtccacgctccggtagaatacttacaaattaaagaaattgccgagtc
ggtccgtaaatacggaaccaatgctaattttaccttggtgcagttagaca
ggctcgccggcatggcactaactcctgctgactggcaaacggttgtaaag
ccgctctccctagtatgggcaatatatggaatgagagctcttggcatgaa
actgcacagcgcagccgagcaaacgcagctgcctttgactcgagcagaag
atggacttggactggtaccgggtcagggagcttatttctgtgatcacact
acatggggagcttatgccagttcctccagggctatataggccttgaaaag
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_21251876_21252529
seq2: B6Ng01-344M06.b_49_702 (reverse)

seq1  GTCCCCTGGAAGCAGAGACAGTGCTTGTCATAAGAGCTGAGTCTCCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTGGAAGCAGAGACAGTGCTTGTCATAAGAGCTGAGTCTCCTCTC  50

seq1  CAGCCCAGGGAGTTCATTTTTTAAAAACCTTCTTAGGTTTATAGCTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGGGAGTTCATTTTTTAAAAACCTTCTTAGGTTTATAGCTTTAT  100

seq1  AAACATTATTTTTTTAAATGAGAGGCTAATGCAAGAGGACAAGTTTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTATTTTTTTAAATGAGAGGCTAATGCAAGAGGACAAGTTTGAGG  150

seq1  GCTACACAGCGAGTTCCAGGCCAGTCTGGGATACAGAAAGACACTGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACAGCGAGTTCCAGGCCAGTCTGGGATACAGAAAGACACTGTTTC  200

seq1  AAAACCAAACAATCCACTGGGGAGGTTTGAGGAGGTGGTGCATGCCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAACAATCCACTGGGGAGGTTTGAGGAGGTGGTGCATGCCTTTA  250

seq1  ATCTTAACACTGCTAGACAGAAGCCGGAGAGCTGAGGTCAACCTAGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAACACTGCTAGACAGAAGCCGGAGAGCTGAGGTCAACCTAGCCTC  300

seq1  ATCTACACAGGGAGACTCCGTCTAAATAAGCTAACACACTGAAAATTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACACAGGGAGACTCCGTCTAAATAAGCTAACACACTGAAAATTGAA  350

seq1  ATGGTTAATCTCGTCAAGTTGGCAGGACTTTACCAACTCTGGATATATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAATCTCGTCAAGTTGGCAGGACTTTACCAACTCTGGATATATTC  400

seq1  CCTAGGATGTTTCTAGACAGGTTTAACTGCACAAGGGAGACCCACACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGATGTTTCTAGACAGGTTTAACTGCACAAGGGAGACCCACACTGA  450

seq1  CTGAATGTGGTTGGTGGCACTTGGAGAGCTGAGGTCTCTAACTGAATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGTGGTTGGTGGCACTTGGAGAGCTGAGGTCTCTAACTGAATAAG  500

seq1  CCTTCATCTGCCTCTGCTCCCTGGCACCATCAGCGTCTCAGCTCCTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATCTGCCTCTGCTCCCTGGCACCATCAGCGTCTCAGCTCCTAACT  550

seq1  TCCCACCATGATGCACAAATCAACCTTTTTTCTTCCTGAAGATGCTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCATGATGCACAAATCAACCTTTTTTCTTCCTGAAGATGCTCTGG  600

seq1  GTGAGTATTTTATCATTTTAGCATTAAGTAAGTGATATAAAAATGTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTATTTTATCATTTTAGCATTAAGTAAGTGATATAAAAATGTTTGA  650

seq1  ATTC  654
      ||||
seq2  ATTC  654