BAC Information

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BAC

Clone NameB6Ng01-344O04
Chromosome14 (Build37)
Map Location 51,411,402 - 51,547,010
singlet/doubletdoublet
Overlap geneGm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b
Upstream geneLOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5
Downstream genePnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344O04.bB6Ng01-344O04.g
ACCGA127255GA127256
length1,1471,049
definitionB6Ng01-344O04.b B6Ng01-344O04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,545,870 - 51,547,010)(51,411,402 - 51,412,455)
sequence
gaattcctccttccgattttacttccagttgcagtattgaactgggctga
ggtagggtcactgtcttgggagaggttagggactcatctgtgcttgtaaa
taaataatgtcatgactctaacctttcccacttaacaacttttgtgtatg
aaaaagggaatatgtagttttcacaaagggacaaagaaagccaagctgaa
agtagggccttttatttctcttggattgtctaaaggaaaccagaagtttg
gtttaatgtttaaaatgagggagcacatacaaaaccaaacacctgaaggc
taaaacaccagacttctgcagagagagccatctcccaggcaggaagctac
tgcaggagggtatcacagtgctaggtaaagggtgatgggacagtggtcac
tgccaagagccttggaccggatcttgctgtcacacaatgcaggtaaaaga
gagtgggaaagcaaaaagtaatcaaggcgccaaccaacattcttagagcg
ggcattcatcatgtaagtccagaaagtgtaagcgtaagcagtgttggggt
agagatgccggaagctgtcagccaatggtacagcttgtagcagttcccca
aaaccttggcgctcctggggagtaaagccagcattctttttgtttccttt
ggggttacggaggtcaatttcttcatgagccacattgagatccccacata
gcacaagaggctttctggaagccaagtcctttagaaactttcggaaggct
tcatcccaacgctgtcggtattccagtcttaccagacccctgcctgcatt
gggaacataggctgttaccaggacaaaggactcaaattcagccacaatca
cccggccttcttgatcatgttcttcctcgcctataaaaataaaaaccagt
gtaaaaattttaagaaaggtctaagaaaaagtagtagagttaactgaaga
acattcagacatgaatgtcattaaggtctcaccatgccataggagacttt
tagcgggcactggcgggaaagtaggcccaccaccactgtatcctttcttt
gtctgacggagctgaccagttactgatgggtgagttccagcagctcttgc
cagttccaagcccgggagtttgttctccgagcacttgtctccttgga
gaattctaggacaagtagacttatgtagagaccctgtctcaaaaaaataa
ataaccaaataataataataacaacaacaacaacttaaatgtatgcaaat
ccacctgagagcaacagtgtactgagtaagacaaggaacccacagctcag
tttactgtggttcttcgccctcaaagacttctgaatgtgtgaactacaca
gcacaatgtaaaaaacctaggagttgggtttgagatttcctcttacctgg
tgggaagccaaagactccagactgcgggatcatacctggttccagggagc
cttcttggctggcgatagtgatatttcttagcctaaggctatcataaagg
ccttggagcttttggtactggcgattacgctccataagtttttcagagat
gtcactaaactttttcttgtattcttctagaactttcttcatggaaataa
cctcccctttcatagaggtcaattctatattcttgctctgtatttgctgc
atatacatcttctccatctgttttaagtggttctcggccttgctgaaatt
atactcttgatagagacgctcctggtgtacctgcccaaataaatgagaag
cagcacaatattatagactctaaaccctcatccaagcacaagtggaaaga
atgtttatacagggatatcagtattacaatatttaaaacctggctaaaaa
cataatcacagcatacaatgagcgtactacagaaaaccggctgctcagaa
aactataccaccaaaacaaatatgtcttatctacaagtgagaagcagcag
aagttaggtgtgaaggtttatttatgcatgtagtctcagcagacaggaaa
ggtacgcaggatcaaacttaaggccacctgggccacatgggacaaaccac
gaaaaaaattgtatttacaggacacatagatgagtctaatttttccaaga
tccagaacaaaacaatacgatctcaaatatccttgctatctagaatttac
acatgttgtaacccatgtagaacagaacatgtacttgaacatagcaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_51545870_51547010
seq2: B6Ng01-344O04.b_48_1194 (reverse)

seq1  TCCAA-GAGACCAAGTGCTCGGAGAACAAACTCCC-GGCT--GAACT-GC  45
      ||||| |||| |||||||||||||||||||||||| ||||  ||||| ||
seq2  TCCAAGGAGA-CAAGTGCTCGGAGAACAAACTCCCGGGCTTGGAACTGGC  49

seq1  AAGAGCTGCCTGGACTCACCCATCAGT-ACTGGTCAGCTCCGTCAGACAA  94
      |||||||||  | |||||||||||||| ||||||||||||||||||||||
seq2  AAGAGCTGCTGGAACTCACCCATCAGTAACTGGTCAGCTCCGTCAGACAA  99

seq1  AG-AAGGATACAGTGGT-GTGGGCCTACTTTCCCGCCAGTGCCCGCTAAA  142
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGAAAGGATACAGTGGTGGTGGGCCTACTTTCCCGCCAGTGCCCGCTAAA  149

seq1  AGTCTCTTATGGCATTGGTGAGACCTTAATGACATTCATGTCTGAATGTT  192
      |||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  AGTCTCCTATGGCA-TGGTGAGACCTTAATGACATTCATGTCTGAATGTT  198

seq1  CTTCAGTTAACTCTACTACTTTTTCTTAGACCTTTCTTAAAATTTTTACA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTAACTCTACTACTTTTTCTTAGACCTTTCTTAAAATTTTTACA  248

seq1  CTGGTTTTTATTTTTATAGGCGAGGAAGAACATGATCAAGAAGGCCGGGT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTTATTTTTATAGGCGAGGAAGAACATGATCAAGAAGGCCGGGT  298

seq1  GATTGTGGCTGAATTTGAGTCCTTTGTCCTGGTAACAGCCTATGTTCCCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGGCTGAATTTGAGTCCTTTGTCCTGGTAACAGCCTATGTTCCCA  348

seq1  ATGCAGGCAGGGGTCTGGTAAGACTGGAATACCGACAGCGTTGGGATGAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGCAGGGGTCTGGTAAGACTGGAATACCGACAGCGTTGGGATGAA  398

seq1  GCCTTCCGAAAGTTTCTAAAGGACTTGGCTTCCAGAAAGCCTCTTGTGCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCGAAAGTTTCTAAAGGACTTGGCTTCCAGAAAGCCTCTTGTGCT  448

seq1  ATGTGGGGATCTCAATGTGGCTCATGAAGAAATTGACCTCCGTAACCCCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGGATCTCAATGTGGCTCATGAAGAAATTGACCTCCGTAACCCCA  498

seq1  AAGGAAACAAAAAGAATGCTGGCTTTACTCCCCAGGAGCGCCAAGGTTTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACAAAAAGAATGCTGGCTTTACTCCCCAGGAGCGCCAAGGTTTT  548

seq1  GGGGAACTGCTACAAGCTGTACCATTGGCTGACAGCTTCCGGCATCTCTA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAACTGCTACAAGCTGTACCATTGGCTGACAGCTTCCGGCATCTCTA  598

seq1  CCCCAACACTGCTTACGCTTACACTTTCTGGACTTACATGATGAATGCCC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACACTGCTTACGCTTACACTTTCTGGACTTACATGATGAATGCCC  648

seq1  GCTCTAAGAATGTTGGTTGGCGCCTTGATTACTTTTTGCTTTCCCACTCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAGAATGTTGGTTGGCGCCTTGATTACTTTTTGCTTTCCCACTCT  698

seq1  CTTTTACCTGCATTGTGTGACAGCAAGATCCGGTCCAAGGCTCTTGGCAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACCTGCATTGTGTGACAGCAAGATCCGGTCCAAGGCTCTTGGCAG  748

seq1  TGACCACTGTCCCATCACCCTTTACCTAGCACTGTGATACCCTCCTGCAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACTGTCCCATCACCCTTTACCTAGCACTGTGATACCCTCCTGCAG  798

seq1  TAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGTTTTAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGTTTTAG  848

seq1  CCTTCAGGTGTTTGGTTTTGTATGTGCTCCCTCATTTTAAACATTAAACC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGTGTTTGGTTTTGTATGTGCTCCCTCATTTTAAACATTAAACC  898

seq1  AAACTTCTGGTTTCCTTTAGACAATCCAAGAGAAATAAAAGGCCCTACTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCTGGTTTCCTTTAGACAATCCAAGAGAAATAAAAGGCCCTACTT  948

seq1  TCAGCTTGGCTTTCTTTGTCCCTTTGTGAAAACTACATATTCCCTTTTTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTGGCTTTCTTTGTCCCTTTGTGAAAACTACATATTCCCTTTTTC  998

seq1  ATACACAAAAGTTGTTAAGTGGGAAAGGTTAGAGTCATGACATTATTTAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAAAAGTTGTTAAGTGGGAAAGGTTAGAGTCATGACATTATTTAT  1048

seq1  TTACAAGCACAGATGAGTCCCTAACCTCTCCCAAGACAGTGACCCTACCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGCACAGATGAGTCCCTAACCTCTCCCAAGACAGTGACCCTACCT  1098

seq1  CAGCCCAGTTCAATACTGCAACTGGAAGTAAAATCGGAAGGAGGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGTTCAATACTGCAACTGGAAGTAAAATCGGAAGGAGGAATTC  1147

seq1: chr14_51411402_51412455
seq2: B6Ng01-344O04.g_66_1114

seq1  GAATTCTAGGACAAGTAGACTTATGTAGAGACCCTGTCTCAAAAAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGACAAGTAGACTTATGTAGAGACCCTGTCTCAAAAAAATAA  50

seq1  ATAACCAAATAATAATAATAACAACAACAACAACTTAAATGTATGCAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCAAATAATAATAATAACAACAACAACAACTTAAATGTATGCAAAT  100

seq1  CCACCTGAGAGCAACAGTGTACTGAGTAAGACAAGGAACCCACAGCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGAGAGCAACAGTGTACTGAGTAAGACAAGGAACCCACAGCTCAG  150

seq1  TTTACTGTGGTTCTTCGCCCTCAAAGACTTCTGAATGTGTGAACTACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTGGTTCTTCGCCCTCAAAGACTTCTGAATGTGTGAACTACACA  200

seq1  GCACAATGTAAAAAACCTAGGAGTTGGGTTTGAGATTTCCTCTTACCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATGTAAAAAACCTAGGAGTTGGGTTTGAGATTTCCTCTTACCTGG  250

seq1  TGGGAAGCCAAAGACTCCAGACTGCGGGATCATACCTGGTTCCAGGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGCCAAAGACTCCAGACTGCGGGATCATACCTGGTTCCAGGGAGC  300

seq1  CTTCTTGGCTGGCGATAGTGATATTTCTTAGCCTAAGGCTATCATAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGGCTGGCGATAGTGATATTTCTTAGCCTAAGGCTATCATAAAGG  350

seq1  CCTTGGAGCTTTTGGTACTGGCGATTACGCTCCATAAGTTTTTCAGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAGCTTTTGGTACTGGCGATTACGCTCCATAAGTTTTTCAGAGAT  400

seq1  GTCACTAAACTTTTTCTTGTATTCTTCTAGAACTTTCTTCATGGAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTAAACTTTTTCTTGTATTCTTCTAGAACTTTCTTCATGGAAATAA  450

seq1  CCTCCCCTTTCATAGAGGTCAATTCTATATTCTTGCTCTGTATTTGCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTTTCATAGAGGTCAATTCTATATTCTTGCTCTGTATTTGCTGC  500

seq1  ATATACATCTTCTCCATCTGTTTTAAGTGGTTCTCGGCCTTGCTGAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATCTTCTCCATCTGTTTTAAGTGGTTCTCGGCCTTGCTGAAATT  550

seq1  ATACTCTTGATAGAGACGCTCCTGGTGTACCTGCCCAAATAAATGAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTTGATAGAGACGCTCCTGGTGTACCTGCCCAAATAAATGAGAAG  600

seq1  CAGCACAATATTATAGACTCTAAACCCTCATCCAAGCACAAGTGGAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAATATTATAGACTCTAAACCCTCATCCAAGCACAAGTGGAAAGA  650

seq1  ATGTTTATACAGGGATATCAGTATTACAATATTTAAAACCTGGCTAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATACAGGGATATCAGTATTACAATATTTAAAACCTGGCTAAAAA  700

seq1  CATAATCACAGCATACAATGAGCGTACTACAGAAAACCGGCTGCTCAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCACAGCATACAATGAGCGTACTACAGAAAACCGGCTGCTCAGAA  750

seq1  AACTATACCACCAAAACAAATATGTCTTATCTACAAGTGAGAAGCAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATACCACCAAAACAAATATGTCTTATCTACAAGTGAGAAGCAGCAG  800

seq1  AAGTTAGGTGTGAAGGTTTATTTATGCATGTAGTCTCAGCAGACAGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGGTGTGAAGGTTTATTTATGCATGTAGTCTCAGCAGACAGGAAA  850

seq1  GGTACGCAGGATCAAACTTAAGGCCACCTGGGCCACATGGGACAAAACCA  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGTACGCAGGATCAAACTTAAGGCCACCTGGGCCACATGGGAC-AAACCA  899

seq1  CGAAAAAAATTGTATTTACAGGACACATAGATGAAGTCTAATTTTTCCAA  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CGAAAAAAATTGTATTTACAGGACACATAGATG-AGTCTAATTTTTCCAA  948

seq1  GGATCCAGAACAAAACAATACGATCTCAAAATATCCTTGCTATCTAGAAT  1000
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  -GATCCAGAACAAAACAATACGATCTC-AAATATCCTTGCTATCTAGAAT  996

seq1  TTACACATG-TGTAACCCCATGTTAGACAGAACATGTAACTTGAACATAG  1049
      ||||||||| ||||| |||||||   ||||||||||| ||||||||||||
seq2  TTACACATGTTGTAA-CCCATGTAGAACAGAACATGT-ACTTGAACATAG  1044

seq1  CAAAC  1054
      |||||
seq2  CAAAC  1049