BAC Information

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BAC

Clone NameB6Ng01-345D08
Chromosome14 (Build37)13 (Build37)
Map Location 110,372,734 - 110,373,15212,613,006 - 12,614,115
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC640892
Downstream geneSlitrk6, EG668772, EG622052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345D08.bB6Ng01-345D08.g
ACCGA127476GA127477
length6231,102
definitionB6Ng01-345D08.b B6Ng01-345D08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(110,372,734 - 110,373,152)(12,613,006 - 12,614,115)
sequence
gaattcacagagatctgtccgcctttgcttccctagtactgggattaagg
gtgtgtaccaccactgtcaagctacttaaacactttctagtttagtatgc
acatgatatgtacaaagatgcatatctttcacacctgttatgtgtgtttg
tgtgtattcgagagtgtatgtgtgtgtgtatgagtgtgagtatattgtgt
gtatgtatgtctgaaaacattgtgcaatctgtgactttaattttcagtgt
cacagaatgaaatatttatattgacattcattttatactctattcttgtt
ttatactttcattcaaacgagccaattcaaacgtaaaaaaaaattcacta
aagtaatgcattgatttttattcttcaataataagaaccagttctttaac
atgctgggtttaatttacttagcttaatcaatagcaatttaatcacattg
atttgtgtccttggagaggtagttaacacattttattattactacttttt
taggctagaactgcaattccctttgaatttatccaagtgtatttaaagaa
gaggctaaagatattacttaaattttactatctaggagaaagtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgt
gaattccatctctgcgtggagtatagaaggaaccacagaccaaacctcaa
agtagactccctgagaaaataccctttctaaattaatttccctaccttac
ctgagcctttgtggcctcctctctaaagacccaactcttccatggcagca
tcttatggagaatacaaaccaaccccaagagtgccgtgagcctcagaacc
acagagcagcctggggggcaccacaaagatacattggcatttgctgtctc
cctgaaatgttcagtttattaattaatctgaattgggtaatttgttaatg
aaattgtccagcaaatactgaaataatctttcttttcttacttcctcctc
ctccccccttcctcctcttttttaataaagccccacaccataaagttctt
ggtggtctcaaactccagactcccctcctgcctcagtctcttgtgtgctg
ggattacaacgtatatcatcaggctggggcttatgcatgccaggcactct
actactgacctacatccttggctggcatctcctttaaactccttttttaa
aaagaaaatagttctatgcttatgtccaaggcagatatagattatgtgct
tcctttcagagattcctattaaatgtaacgtgtctgtaacctttgtatat
ggcacatagtgaagatgctgccactagagctggagaggcagcttagcctt
gaaagtgctaccacttttgcaaaagacccaagctcagttcctagcaaggc
cacaaccaccagcaactccacctttaggggagctaccaccgtcttctaga
ccctgtaggcactgtacttgtgtgttcatacccctcacccccaatatgat
ttaaaaaataatagaaataacttaaacttttaataaaatatagccatttt
aaaagatcagattcgccatgcagtgtggcacatgcctttaaccccagcac
ttggcaggcagaggcaggtggatttctgagttctacagagtgagtttcag
gacagccagggctatacagagaaaccctatctcgaaaaaccctaaaaacc
aaatacaaaactaaagataaagatcagattctctggctctaataagaata
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_110372734_110373152
seq2: B6Ng01-345D08.b_250_669 (reverse)

seq1  ACACACACACACACACACACACACACACACACTTTCTCCTAGATAGTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACTTTCTCCTAGATAGTAAA  50

seq1  ATTTAAGTAATATCTTTAGCCTCTTCTTTAAATACACTTGGATAAATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGTAATATCTTTAGCCTCTTCTTTAAATACACTTGGATAAATTCA  100

seq1  AAGGGAATTGCAGTTCTAGCCTAAAAAAGTAGTAATAATAAAATGTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAATTGCAGTTCTAGCCTAAAAAAGTAGTAATAATAAAATGTGTTA  150

seq1  ACTACCTCTCCAAGGACACAAATCAATGTGATTAAATTGCTATTGATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTCTCCAAGGACACAAATCAATGTGATTAAATTGCTATTGATTAA  200

seq1  GCTAAGTAAATTAAACCCAGCATGTTAAAGAACTGGTTCTTATTATTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTAAATTAAACCCAGCATGTTAAAGAACTGGTTCTTATTATTGAA  250

seq1  GAATAAAAATCAATGCATTACTTTAGTGAATTTTTTTTTACGTTTGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAAATCAATGCATTACTTTAGTGAATTTTTTTTTACGTTTGAATT  300

seq1  GGCTCGTTTGAATGAAAGTATAAAACAAGAATAGAGTATAAAATGAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGTTTGAATGAAAGTATAAAACAAGAATAGAGTATAAAATGAATGT  350

seq1  CAATATAAATATTTCATTCTGTGACACTGAAAATTAAAGTCACAGATTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATAAATATTTCATTCTGTGACACTGAAAATTAAAGTCACAGATTGC  400

seq1  ACAATGTTTTCAGA-ATACA  419
      |||||||||||||| |||||
seq2  ACAATGTTTTCAGACATACA  420

seq1: chr13_12613006_12614115
seq2: B6Ng01-345D08.g_66_1167 (reverse)

seq1  TTTATTCTAATTAAGAG-CAGAGAATCTGATCTTTTATTTTTTTATTTTT  49
      |||||||| ||| |||| |||||||||||||| ||||| ||    |  ||
seq2  TTTATTCTTATT-AGAGCCAGAGAATCTGATC-TTTATCTT----TAGTT  44

seq1  TTGTTTTTTGTTTTTTGGGTTTTTTCGAGATAGGGTTTCTCTGTATAGCC  99
      |||| ||| |||||| ||| ||||||||||||||||||||||||||||||
seq2  TTGTATTTGGTTTTTAGGG-TTTTTCGAGATAGGGTTTCTCTGTATAGCC  93

seq1  CTGGCTGTCCTGGAACTCACTCTGTAGAACTCAGAAATCCACCTGCCTCT  149
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTCCTGAAACTCACTCTGTAGAACTCAGAAATCCACCTGCCTCT  143

seq1  GCCTGCCAAGTGCTGGGGTTAAAGGCATGTGCCACCACTGCATGGCGAAT  199
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCCTGCCAAGTGCTGGGGTTAAAGGCATGTGCCA-CACTGCATGGCGAAT  192

seq1  CTGATCTTTTAAAATGGCTATATTTTATTTAAAAGTTTAAGTTATTTCTA  249
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGATCTTTTAAAATGGCTATATTTTA-TTAAAAGTTTAAGTTATTTCTA  241

seq1  TTATTTTTTAAATCATATTGGGGGTGAGGGGTATGAACACACAAGTACAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTAAATCATATTGGGGGTGAGGGGTATGAACACACAAGTACAG  291

seq1  TGCCTACAGGGTCTAGAAGACGGTGGTAGCTCCCCTAAAGGTGGAGTTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACAGGGTCTAGAAGACGGTGGTAGCTCCCCTAAAGGTGGAGTTGC  341

seq1  TGGTGGTTGTGGCCTTGCTAGGAACTGAGCTTGGGTCTTTTGCAAAAGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTTGTGGCCTTGCTAGGAACTGAGCTTGGGTCTTTTGCAAAAGTG  391

seq1  GTAGCACTTTCAAGGCTAAGCTGCCTCTCCAGCTCTAGTGGCAGCATCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACTTTCAAGGCTAAGCTGCCTCTCCAGCTCTAGTGGCAGCATCTT  441

seq1  CACTATGTGCCATATACAAAGGTTACAGACACGTTACATTTAATAGGAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGTGCCATATACAAAGGTTACAGACACGTTACATTTAATAGGAAT  491

seq1  CTCTGAAAGGAAGCACATAATCTATATCTGCCTTGGACATAAGCATAGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAAGGAAGCACATAATCTATATCTGCCTTGGACATAAGCATAGAA  541

seq1  CTATTTTCTTTTTAAAAAAGGAGTTTAAAGGAGATGCCAGCCAAGGATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCTTTTTAAAAAAGGAGTTTAAAGGAGATGCCAGCCAAGGATGT  591

seq1  AGGTCAGTAGTAGAGTGCCTGGCATGCATAAGCCCCAGCCTGATGATATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGTAGTAGAGTGCCTGGCATGCATAAGCCCCAGCCTGATGATATA  641

seq1  CGTTGTAATCCCAGCACACAAGAGACTGAGGCAGGAGGGGAGTCTGGAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTAATCCCAGCACACAAGAGACTGAGGCAGGAGGGGAGTCTGGAGT  691

seq1  TTGAGACCACCAAGAACTTTATGGTGTGGGGCTTTATTAAAAAAGAGGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACCACCAAGAACTTTATGGTGTGGGGCTTTATTAAAAAAGAGGAG  741

seq1  GAAGGGGGGAGGAGGAGGAAGTAAGAAAAGAAAGATTATTTCAGTATTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGGGAGGAGGAGGAAGTAAGAAAAGAAAGATTATTTCAGTATTTG  791

seq1  CTGGACAATTTCATTAACAAATTACCCAATTCAGATTAATTAATAAACTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACAATTTCATTAACAAATTACCCAATTCAGATTAATTAATAAACTG  841

seq1  AACATTTCAGGGAGACAGCAAATGCCAATGTATCTTTGTGGTGCCCCCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCAGGGAGACAGCAAATGCCAATGTATCTTTGTGGTGCCCCCCA  891

seq1  GGCTGCTCTGTGGTTCTGAGGCTCACGGCACTCTTGGGGTTGGTTTGTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTCTGTGGTTCTGAGGCTCACGGCACTCTTGGGGTTGGTTTGTAT  941

seq1  TCTCCATAAGATGCTGCCATGGAAGAGTTGGGTCTTTAGAGAGGAGGCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATAAGATGCTGCCATGGAAGAGTTGGGTCTTTAGAGAGGAGGCCA  991

seq1  CAAAGGCTCAGGTAAGGTAGGGAAATTAATTTAGAAAGGGTATTTTCTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTCAGGTAAGGTAGGGAAATTAATTTAGAAAGGGTATTTTCTCA  1041

seq1  GGGAGTCTACTTTGAGGTTTGGTCTGTGGTTCCTTCTATACTCCACGCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCTACTTTGAGGTTTGGTCTGTGGTTCCTTCTATACTCCACGCAG  1091

seq1  AGATGGAATTC  1110
      |||||||||||
seq2  AGATGGAATTC  1102