BAC Information

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BAC

Clone NameB6Ng01-345M16
Chromosome14 (Build37)
Map Location 8,097,433 - 8,185,181
singlet/doubletdoublet
Overlap geneLOC100041830, LOC100042235, EG545013, EG666947
Upstream geneLOC100041569, LOC100041970, LOC100042000, EG666874, B930046C15Rik, LOC100041600, LOC100041958, LOC100041964, LOC546590, LOC666906, LOC100042024, LOC100041664, LOC100042077, LOC100041675, LOC666329, EG666833, LOC100042043, EG666918, LOC100041700, LOC100042054, LOC100042100, EG622781, LOC100041740, LOC100038847, LOC100042129, LOC100041770, LOC100042149, LOC544988, EG626456, LOC100041791, LOC100042164, LOC100042182, LOC100041808, LOC100042192, LOC100042207, EG432817, LOC100042217
Downstream geneLOC623215, LOC100042286, LOC666957, LOC100042263, LOC100042258, LOC100042272, LOC100041874, LOC100042304, LOC100041881, LOC100042312, LOC100041893, ENSMUSG00000058570, EG666976, Flnb, Dnase1l3, Abhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345M16.bB6Ng01-345M16.g
ACCGA127875GA127876
length1,1131,095
definitionB6Ng01-345M16.b B6Ng01-345M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,097,433 - 8,098,550)(8,184,088 - 8,185,181)
sequence
gaattctactgcttcattagatgtcatgtgcttttgagggggaacgttgg
ttagaactctgacatgcttaagagattttgttagcacccaaatctctagg
gactgtggatgtagtagatgtttcacaacaataaatatgccacctgagca
attcatgtgacatacactccaattacccagggttttcctgtctcaaagag
gcaaatatctttctcctataggtttaattgtacaaaacttggacaatatt
ttctaacggtgaattccttgatagtgggcattcttttcatatatatacat
atatatccatgagtttctcaaaatcactggtttacaatcctatcttttac
aaggaaaactccctatttttttgaacatatggaatcatctacagggcaaa
tataaatggtaaacttgctgtcctatcttcaaaacattttcttgcacatg
gtcctgttctcaaatacaaccagacaatttaagtgggcatcagagagcaa
aagtcatcctggactgtacattactacattgtagccccatagcaatcact
tctccagtatctgtcttcctgaattgcgaagttgagcaatgagggtgttg
caggttgtaacatcatactgtactcacagcaaatatataactcagaatgt
agggcagggaatgcaatggctgagttgagatgaaacctcaattttaatgt
gtctataaggtcaggatgctgtccctttggcattatcatctctggcttct
gtgttcttatgctggctttgctaaacctgtgctaatataccccctaacct
cacagatttaagagtgaaaaatcatgtatatcttctttcagaaaacatct
gaaattcactaccttcttgagccacacaatatcaatatgcagagctcaaa
aatcaggggagataggtgatgccttcaaagttgagggcttttttcttaca
attagggcacatattttttttccaatgtgattttttttttttctctttca
ctacgggtggctatgtgtttgctggactaaagcttcctaagatcaccaca
gcagctaactctataacaggctcatttacagaaaagattgtttgtagatc
atgccatgccagc
gaattctccttaagagggacggggtttcgttttctctctctcttgcttcg
ctctcttgcttctctctcttgcttctctctcttgcttctctctctcttgc
ttcttgctctcttgcttcttgcactctgctcctgaagatgtaacaataaa
gccttgccgcagaagattctggtctgtggtgttcttcctggccggtcgtg
agaatgcgtctaataacaggagctgactggataaatatggttgttttgaa
gacttctgccaggcttgacacagtgggtggcaattttagacttcaagcga
aaaaattctccagacacctaagcctattctgctcaagcagtccatgctgc
cctaattatcattagttcccataggaaagacagcagaatcagggatatta
cttgaaacacctggtgttcttagtttatatttaattattcatccagtgtg
tcttcctcattgttttctgcacacttatgatttctagggtgtgtaccttg
tatacatgtctgtgcagacatgtgcatacgtgggtatgttggaaactcag
aaaatatcatctgatatcctcctcttatgcctcattctcttgagccaagt
tctcactgaacctgacatttcctgttttgccttagctatccgagcagaga
tcattaaatctcctgtctctcacagatgtagcctacaatctcgttcagtc
tgatatagttgtcccaaggtttaagtactcagaaggtagaaaaaggtgat
ggttttctattccttttgatatcatcattattatcgttttggaatctatg
tgtcttttaataattaacaaaaaacagtcaatgctactatttaaaattaa
aatgcagagctctttcctctcattgcacagggaaactcttcagagaattt
ctgctttatctcattcgcctcacaacatgaatccccaagtatatctcttt
tcctgaaatttctgtcgattatatcatgtgtgtggctgtgcttagagtgc
tttcattcagaaaagcatgcagtgatgtcactagcctttcaacctgactg
aatctgggtgcagttttacataagtgcactgtagtctggtgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_8097433_8098550
seq2: B6Ng01-345M16.b_48_1160

seq1  GAATTCTACTGCTTCATTAGATGTCATGTGCTTTTGAGGGGGAACGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTGCTTCATTAGATGTCATGTGCTTTTGAGGGGGAACGTTGG  50

seq1  TTAGAACTCTGACATGCTTAAGAGATTTTGTTAGCACCCAAATCTCTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACTCTGACATGCTTAAGAGATTTTGTTAGCACCCAAATCTCTAGG  100

seq1  GACTGTGGATGTAGTAGATGTTTCACAACAATAAATATGCCACCTGAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGGATGTAGTAGATGTTTCACAACAATAAATATGCCACCTGAGCA  150

seq1  ATTCATGTGACATACACTCCAATTACCCAGGGTTTTCCTGTCTCAAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGTGACATACACTCCAATTACCCAGGGTTTTCCTGTCTCAAAGAG  200

seq1  GCAAATATCTTTCTCCTATAGGTTTAATTGTACAAAACTTGGACAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATATCTTTCTCCTATAGGTTTAATTGTACAAAACTTGGACAATATT  250

seq1  TTCTAACGGTGAATTCCTTGATAGTGGGCATTCTTTTCATATATATACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACGGTGAATTCCTTGATAGTGGGCATTCTTTTCATATATATACAT  300

seq1  ATATATCCATGAGTTTCTCAAAATCACTGGTTTACAATCCTATCTTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCATGAGTTTCTCAAAATCACTGGTTTACAATCCTATCTTTTAC  350

seq1  AAGGAAAACTCCCTATTTTTTTGAACATATGGAATCATCTACAGGGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAACTCCCTATTTTTTTGAACATATGGAATCATCTACAGGGCAAA  400

seq1  TATAAATGGTAAACTTGCTGTCCTATCTTCAAAACATTTTCTTGCACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATGGTAAACTTGCTGTCCTATCTTCAAAACATTTTCTTGCACATG  450

seq1  GTCCTGTTCTCAAATACAACCAGACAATTTAAGTGGGCATCAGAGAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTTCTCAAATACAACCAGACAATTTAAGTGGGCATCAGAGAGCAA  500

seq1  AAGTCATCCTGGACTGTACATTACTACATTGTAGCCCCATAGCAATCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATCCTGGACTGTACATTACTACATTGTAGCCCCATAGCAATCACT  550

seq1  TCTCCAGTATCTGTCTTCCTGAATTGCGAAGTTGAGCAATGAGGGTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGTATCTGTCTTCCTGAATTGCGAAGTTGAGCAATGAGGGTGTTG  600

seq1  CAGGTTGTAACATCATACTGTACTCACAGCAAATATATAACTCAGAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGTAACATCATACTGTACTCACAGCAAATATATAACTCAGAATGT  650

seq1  AGGGCAGGGAATGCAATGGCTGAGTTGAGATGAAACCTCAATTTTAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGGAATGCAATGGCTGAGTTGAGATGAAACCTCAATTTTAATGT  700

seq1  GTCTATAAGGTCAGGATGCTGTCCCTTTGGCATTATCATCTCTGGCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATAAGGTCAGGATGCTGTCCCTTTGGCATTATCATCTCTGGCTTCT  750

seq1  GTGTTCTTATGCTGGCTTTGCTAAACCTGTGCTAATATACCCCCTAACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTATGCTGGCTTTGCTAAACCTGTGCTAATATACCCCCTAACCT  800

seq1  CACAGATTTAAGAGTGAAAAATCATGTATATCTTCTTTCAGAAAACATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTTAAGAGTGAAAAATCATGTATATCTTCTTTCAGAAAACATCT  850

seq1  GAAATTCACTACCTTCTTGAGCCACACAATATCAATATGCAGAGCTCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCACTACCTTCTTGAGCCACACAATATCAATATGCAGAGCTCAAA  900

seq1  AATCAGGGGGAGATAGGTGATGCCTTCAAAGTTGAGGGC-TTTTTCTTAC  949
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATCA-GGGGAGATAGGTGATGCCTTCAAAGTTGAGGGCTTTTTTCTTAC  949

seq1  AATTAGGGCACATATTTTTTTTCCAATGTGA--TTTTTTTTTTCTCTTTC  997
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  AATTAGGGCACATATTTTTTTTCCAATGTGATTTTTTTTTTTTCTCTTTC  999

seq1  ACTACGGGTGGCTTATGTGTTTGCTGGCCTAAAGGCTCCT-AGATCCAAC  1046
      |||||||||||| |||||||||||||| ||||||  |||| |||||  ||
seq2  ACTACGGGTGGC-TATGTGTTTGCTGGACTAAAGCTTCCTAAGATC--AC  1046

seq1  AACAAGCAGCTTACTCTAT-ACAGGCTCAATTTTACCAAGAAAAGGATTG  1095
       || ||||||| ||||||| |||||||||  |||||  |||||| |||||
seq2  CAC-AGCAGCTAACTCTATAACAGGCTCA--TTTAC--AGAAAA-GATTG  1090

seq1  -TTGTAGAATCATGCCATGGCAGC  1118
       |||||| ||||||||||| ||||
seq2  TTTGTAG-ATCATGCCATGCCAGC  1113

seq1: chr14_8184088_8185181
seq2: B6Ng01-345M16.g_67_1161 (reverse)

seq1  CACCCA-CAGATTACAGTGCACTTAATGTAAAACTGCACCCAGA-TCAGT  48
      |||||| |||| |||||||||||| ||||||||||||||||||| |||||
seq2  CACCCACCAGACTACAGTGCACTT-ATGTAAAACTGCACCCAGATTCAGT  49

seq1  CAGTTGG--AGGCTAGTGACACCACTTGCATTGCTTTTCTGAATG-AAGC  95
      ||| | |  |||||||||||| ||| |||| |||||||||||||| ||||
seq2  CAGGTTGAAAGGCTAGTGACATCAC-TGCA-TGCTTTTCTGAATGAAAGC  97

seq1  ACTCCTAAGCCACAGCCACACACATGATATAATCGACAGAAATTTCAGG-  144
      ||| ||||| ||||||||||||||||||||||||||||||||||||||| 
seq2  ACT-CTAAG-CACAGCCACACACATGATATAATCGACAGAAATTTCAGGA  145

seq1  AAAGAGATATACTTGGGGATTTCATGTTGTGAGGCGAATGAGATAAAGCA  194
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAGAGATATACTTGGGGA-TTCATGTTGTGAGGCGAATGAGATAAAGCA  194

seq1  GAAATTCTCTGAAG-GGTTCCCTGTGCAATGAGAGGAAAGAGCTCTGCAT  243
      |||||||||||||| | |||||||||||||||||||||||||||||||||
seq2  GAAATTCTCTGAAGAGTTTCCCTGTGCAATGAGAGGAAAGAGCTCTGCAT  244

seq1  TTTAATTTTAAATAGTAGCATTGACTGTTTTTTGTTAATTATTAAAAGAC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTAAATAGTAGCATTGACTGTTTTTTGTTAATTATTAAAAGAC  294

seq1  ACATAGATTCCAAAACGATAATAATGATGATATCAAAAGGAATAGAAAAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGATTCCAAAACGATAATAATGATGATATCAAAAGGAATAGAAAAC  344

seq1  CATCACCTTTTTCTACCTTCTGAGTACTTAAACCTTGGGACAACTATATC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCTTTTTCTACCTTCTGAGTACTTAAACCTTGGGACAACTATATC  394

seq1  AGACTGAACGAGATTGTAGGCTACATCTGTGAGAGACAGGAGATTTAATG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAACGAGATTGTAGGCTACATCTGTGAGAGACAGGAGATTTAATG  444

seq1  ATCTCTGCTCGGATAGCTAAGGCAAAACAGGAAATGTCAGGTTCAGTGAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGCTCGGATAGCTAAGGCAAAACAGGAAATGTCAGGTTCAGTGAG  494

seq1  AACTTGGCTCAAGAGAATGAGGCATAAGAGGAGGATATCAGATGATATTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGCTCAAGAGAATGAGGCATAAGAGGAGGATATCAGATGATATTT  544

seq1  TCTGAGTTTCCAACATACCCACGTATGCACATGTCTGCACAGACATGTAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTTCCAACATACCCACGTATGCACATGTCTGCACAGACATGTAT  594

seq1  ACAAGGTACACACCCTAGAAATCATAAGTGTGCAGAAAACAATGAGGAAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTACACACCCTAGAAATCATAAGTGTGCAGAAAACAATGAGGAAG  644

seq1  ACACACTGGATGAATAATTAAATATAAACTAAGAACACCAGGTGTTTCAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTGGATGAATAATTAAATATAAACTAAGAACACCAGGTGTTTCAA  694

seq1  GTAATATCCCTGATTCTGCTGTCTTTCCTATGGGAACTAATGATAATTAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATCCCTGATTCTGCTGTCTTTCCTATGGGAACTAATGATAATTAG  744

seq1  GGCAGCATGGACTGCTTGAGCAGAATAGGCTTAGGTGTCTGGAGAATTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCATGGACTGCTTGAGCAGAATAGGCTTAGGTGTCTGGAGAATTTT  794

seq1  TTCGCTTGAAGTCTAAAATTGCCACCCACTGTGTCAAGCCTGGCAGAAGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTTGAAGTCTAAAATTGCCACCCACTGTGTCAAGCCTGGCAGAAGT  844

seq1  CTTCAAAACAACCATATTTATCCAGTCAGCTCCTGTTATTAGACGCATTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAACAACCATATTTATCCAGTCAGCTCCTGTTATTAGACGCATTC  894

seq1  TCACGACCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGCGGCAAGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGACCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGCGGCAAGG  944

seq1  CTTTATTGTTACATCTTCAGGAGCAGAGTGCAAGAAGCAAGAGAGCAAGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGTTACATCTTCAGGAGCAGAGTGCAAGAAGCAAGAGAGCAAGA  994

seq1  AGCAAGAGAGAGAGAAGCAAGAGAGAGAAGCAAGAGAGAGAAGCAAGAGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGAGAGAGAAGCAAGAGAGAGAAGCAAGAGAGAGAAGCAAGAGA  1044

seq1  GCGAAGCAAGAGAGAGAGAAAACGAAACCCCGTCCCTCTTAAGGAGAATT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAGCAAGAGAGAGAGAAAACGAAACCCCGTCCCTCTTAAGGAGAATT  1094

seq1  C  1094
      |
seq2  C  1095