BAC Information

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BAC

Clone NameB6Ng01-346K22
Chromosome14 (Build37)
Map Location 93,986,936 - 93,988,099
singlet/doubletsinglet
Overlap genePcdh9
Upstream geneLOC638252, LOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346K22.bB6Ng01-346K22.g
ACCGA128510GA128511
length1,1671,159
definitionB6Ng01-346K22.b B6Ng01-346K22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatattattatattgaataactcatattaacttaggcacttccga
ttttttaggacaatttgaacattggcatcttttcatctgttttggatact
gtcaattatttcctataccataatagttggcacatacacttacagatatt
cattcctctattaaaatataatgatgtcccttttgggctgtatcagtaca
ttgtatattttggaccacatatattatttataataagaggaatgtgagac
tatgtagaggggaatcctaagttagaagatttcatgttcagggtaccatg
tgatgtactttgaaattcctgtcagtttaaataaaaaataaggagatttt
gaggcctctcaaggagctaagccacgtaaatttcagttctattgaaaagg
ctaagtgtatcctctcatacttctcactttgttaaaatgggaattttgct
tgttctttttgatgaattgttgataagagatcagtaatcacattgttagc
tttttccaatgagttatactatgtttcatctcagtttgactgctctggcc
tgattaagttctgtacaatgtttggaccactgtctaaaagcaaggtgtag
ctggccatttctacctgacattcatgctatttgatatgcttatctcaatt
cataattttagtcatttgtaactgtaactctgtttgcaactttaattata
gttttgtgtagtttttacagaacagccaaaatgtatattctccatttgta
tctgttgtaaaatattctctaggagggtaaatttgatcacgtgttttctt
aggttctgttggctaaaactttgaactaaaattatttatcaggagcaaat
atgaagaaagggaggacactgctgcgttcttcctttcaaaatcctggtca
tctgtattatttgtagctgtcttaagctagaaataataggaaatctgatt
tttctaaaagctgttcggagatttgacaaagacttacatggacaagtggt
ctgtcttctgttctgcagtatatccctggagtgggggaaaattcttctgt
cagagtttatacctgagttccaccccgcctagtaataataaaaattcttc
ttcctttaattgtatgaattaggtagttaggtgaatcattatcccatgaa
ggcaggttatgaagatg

gaattctttagtgcacacctttaatactaaacaatgatatctaattgagt
gactaatcagagaaagatttgacagaaagacttagagattgatactgcca
actctcagaagaaaagtaattttgagagcagcacaggaagaatgtaggca
gttcagtcagttgggagtcagtggagtgcagtggaattgagtttactcat
gagcacatacacttcagtgtaggtcagcagaggcagttgaagacagagaa
ttagaaagcgccagatgatttggacaaattgccagagttagtttgaagcc
aaacagcaattcagtgagaagctgagaaaaaccagtatgagtcagtcagc
ttggaaaggagtttgagccagaatacctgagttgaatcagtcagccagag
tacagaaagaactagaaaggatgaatttatttagcaataagcctctgaga
caacaattatatcaaaggaataaatgttacatttataccagacacagcat
tatgggacaagaaaccttccaagatgactttagttgactttttcttggtc
atctactaccaggcatggggtctctacttaagagtggtttgtatgtagag
tgagactccatcaaagaaaactaaatttggatttaaagcaattatctatt
ggagatagcttctgggttatggctacgacctgtgtccacttttcttttca
gtactgggatacccatgcaaagacaaggcatgctgccatagtctgtatga
gtttacatacatcagctctgctcattttggaaggtcttatttcattggtg
tcctccacccccagtctctcctatagtctgtcagcctctacttcagtagg
gttcctttaagtccgaggccacagattaatggagacattctatttaatgt
tctaaatcccatcaatctctgcatattgtatacttgtgaacttctctatt
tgctctcatctgctgatgagaagcttctctggtgaaagcttgtaagcatt
catctatgatattgtaaaatggtgttatgctatattttctttaatagaaa
gtgtagtgattccccattagggtgtgtctctcgtcatattattgttcact
agctcacgtatagttagatgacgttcatctccatcaagatgccaattcag
gaacaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_93986936_93988099
seq2: B6Ng01-346K22.b_42_1208

seq1  GAATTCATATTATTATATTGAATAACTCATATTAACTTAGGCACTTCCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTATTATATTGAATAACTCATATTAACTTAGGCACTTCCGA  50

seq1  TTTTTTAGGACAATTTGAACATTGGCATCTTTTCATCTGTTTTGGATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGGACAATTTGAACATTGGCATCTTTTCATCTGTTTTGGATACT  100

seq1  GTCAATTATTTCCTATACCATAATAGTTGGCACATACACTTACAGATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTATTTCCTATACCATAATAGTTGGCACATACACTTACAGATATT  150

seq1  CATTCCTCTATTAAAATATAATGATGTCCCTTTTGGGCTGTATCAGTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTCTATTAAAATATAATGATGTCCCTTTTGGGCTGTATCAGTACA  200

seq1  TTGTATATTTTGGACCACATATATTATTTATAATAAGAGGAATGTGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATTTTGGACCACATATATTATTTATAATAAGAGGAATGTGAGAC  250

seq1  TATGTAGAGGGGAATCCTAAGTTAGAAGATTTCATGTTCAGGGTACCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGAGGGGAATCCTAAGTTAGAAGATTTCATGTTCAGGGTACCATG  300

seq1  TGATGTACTTTGAAATTCCTGTCAGTTTAAATAAAAAATAAGGAGATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTACTTTGAAATTCCTGTCAGTTTAAATAAAAAATAAGGAGATTTT  350

seq1  GAGGCCTCTCAAGGAGCTAAGCCACGTAAATTTCAGTTCTATTGAAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTCTCAAGGAGCTAAGCCACGTAAATTTCAGTTCTATTGAAAAGG  400

seq1  CTAAGTGTATCCTCTCATACTTCTCACTTTGTTAAAATGGGAATTTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGTATCCTCTCATACTTCTCACTTTGTTAAAATGGGAATTTTGCT  450

seq1  TGTTCTTTTTGATGAATTGTTGATAAGAGATCAGTAATCACATTGTTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTTTGATGAATTGTTGATAAGAGATCAGTAATCACATTGTTAGC  500

seq1  TTTTTCCAATGAGTTATACTATGTTTCATCTCAGTTTGACTGCTCTGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCAATGAGTTATACTATGTTTCATCTCAGTTTGACTGCTCTGGCC  550

seq1  TGATTAAGTTCTGTACAATGTTTGGACCACTGTCTAAAAGCAAGGTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAGTTCTGTACAATGTTTGGACCACTGTCTAAAAGCAAGGTGTAG  600

seq1  CTGGCCATTTCTACCTGACATTCATGCTATTTGATATGCTTATCTCAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCATTTCTACCTGACATTCATGCTATTTGATATGCTTATCTCAATT  650

seq1  CATAATTTTAGTCATTTGTAACTGTAACTCTGTTTGCAACTTTAATTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTTAGTCATTTGTAACTGTAACTCTGTTTGCAACTTTAATTATA  700

seq1  GTTTTGTGTAGTTTTTACAGAACAGCCAAAATGTATATTCTCCATTTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGTAGTTTTTACAGAACAGCCAAAATGTATATTCTCCATTTGTA  750

seq1  TCTGTTGTAAAATATTCTCTAGGAGGGTAAATTTGATCACGTGTTTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTAAAATATTCTCTAGGAGGGTAAATTTGATCACGTGTTTTCTT  800

seq1  AGGTTCTGTTGGCTAAAACTTTGAACTAAAATTATTTATCAGGAGCAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTGTTGGCTAAAACTTTGAACTAAAATTATTTATCAGGAGCAAAT  850

seq1  ATGAAG-AAGGGAGGACACTGCTGCGTTCTTCCTTTCAAAATCCTGGTCA  899
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAAGGGAGGACACTGCTGCGTTCTTCCTTTCAAAATCCTGGTCA  900

seq1  TCTGTATTATTTGTAGCTGTCTTAAGCTAGAAATAATAGGAAATCTGATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTATTTGTAGCTGTCTTAAGCTAGAAATAATAGGAAATCTGATT  950

seq1  TTTCTAAAAGCTGTTCGGAGATTTGACAAAGACTTACATGGACAAGTGGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAAGCTGTTCGGAGATTTGACAAAGACTTACATGGACAAGTGGT  1000

seq1  CTGTCTTCTGTTCTGCAGGTATATCCCTGGAGT-GGGGAAAATTCTTCTG  1048
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  CTGTCTTCTGTTCTGCA-GTATATCCCTGGAGTGGGGGAAAATTCTTCTG  1049

seq1  TCAAGAGTTTAATACCTGAGTTC--ACCCGCCTAAGGTAATATAAAAATT  1096
      || ||||||| ||||||||||||   ||||||||  ||||||  |||| |
seq2  TC-AGAGTTT-ATACCTGAGTTCCACCCCGCCTA--GTAATAATAAAAAT  1095

seq1  TCTTCTTTCTTTA--TGTATGTATTA-GTAGT--AGTG-ATCATTATTCC  1140
      ||||||| |||||  |||||| |||| |||||   ||| ||||||||  |
seq2  TCTTCTTCCTTTAATTGTATGAATTAGGTAGTTAGGTGAATCATTAT--C  1143

seq1  CCATGGAAAGCA-GTTATGAAGATG  1164
      |||| ||| ||| ||||||||||||
seq2  CCAT-GAAGGCAGGTTATGAAGATG  1167


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