BAC Information

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BAC

Clone NameB6Ng01-347E22
Chromosome14 (Build37)
Map Location 103,299,016 - 103,438,321
singlet/doubletdoublet
Overlap geneKctd12, LOC668699
Upstream geneLmo7, LOC545567, LOC669278
Downstream geneIrg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347E22.bB6Ng01-347E22.g
ACCGA128948GA128949
length1,196527
definitionB6Ng01-347E22.b B6Ng01-347E22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,299,016 - 103,300,214)(103,437,789 - 103,438,321)
sequence
gaattcagccttagggactattcctgcttgaggatacagccttggtatga
gagataattaccctcactgggtctcagactgtctcttgaatctgtactgt
tcctgtagtccaagttaaccacaagtttaggacaaagattcatgtctttg
atgaagggtgaaataaatagacataaccagctttcacataggtgttttgt
aaggattactatgccaatgtacagtgataagaaggcacctaatgtaaata
gataaatccaaagtgaaggcagagatgcaggacttcctgatttaggttac
cttgtaggcacacattagacaatgctttttagaaaaatcaatgtctgttg
tagtttaggttcaaaggatattggagaatacataaggaatccgtactctg
agctttgtaagtccctgtggaaccccacttctgtctcttatattcagcta
atctcccttcttaggaagacagcatagaaacctagagggaacacggggtc
tttatggacatggtaccatccagttgtataattagaactgagtcttcaag
tccattcgtctttgtgtgagaaacacagctgcctctgggagtaacagaat
atatgctttccaccttcctgggagaaagcctgaatggacagggcaggttt
tggccttcctgtctgttgctccacatcccatactgttacagcctccactt
ctccacccatttctgaagccattctgtctcatattgatggaatccaagtc
cctgcttgtcgtcagcttaatgtgtaacatcacgggtgaatcttactaat
atctgctctctaggatcgcatgcggctttggtggaagcttcctctgccta
taagaacttacgtcccatcccgccccccccccaagagtatatttgaccta
cttcaaattgaaaccttgctaattgatgtttttatccataattgttacct
acccaacttttatctgagagacatttttctaaagttatctcataaagtac
ttttcttttggcaaaagaaatgtctggactggcagattttacaggctaag
gcacagtaagttaaaggcacatggaggtcaatgaagaacaatactgggca
tcgcaggcacttggatcttgctctaatcagtctaggaagcactggagaag
attcttctctacgtccttacagcctcaagttctggaaaggccaaga

tctgccaagagctgctcttccctgacactctgaaggaagcctccggagag
ctttcaatttgtaatactttctaataatcatttggatgtcaccgggaggc
taccttgtgggaacatagggctatcacacttgaagctgcggaagactgac
tgctgtgctgttcaccctctcccagccacttcccaaaggctgctcagatc
acagcattgtgccaaacacactcttcatcttcaccctgacgcctaggcgt
gcactgagcaaaacatgtaagagaaagaaacttggaggatagtcagaaaa
gactaggtattctggttatcctaagtggtcaatcaagagtcaaaggaaag
gatttttggtcatagtttgaggacctggccatgtttagatgctgtttgta
agcctgaactggcatttccaaccatgatccagattggggaagcttagaga
gaggttcaatatctgttccaacggttgatgtgtatatcaaggaatcatct
cagataggatctgtataatataggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_103299016_103300214
seq2: B6Ng01-347E22.b_47_1242

seq1  GAATTCAGCCTTAGGGACTATTCCTGCTTGAGGATACAGCCTTGGTATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTTAGGGACTATTCCTGCTTGAGGATACAGCCTTGGTATGA  50

seq1  GAGATAATTACCCTCACTGGGTCTCAGACTGTCTCTTGAATCTGTACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAATTACCCTCACTGGGTCTCAGACTGTCTCTTGAATCTGTACTGT  100

seq1  TCCTGTAGTCCAAGTTAACCACAAGTTTAGGACAAAGATTCATGTCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAGTCCAAGTTAACCACAAGTTTAGGACAAAGATTCATGTCTTTG  150

seq1  ATGAAGGGTGAAATAAATAGACATAACCAGCTTTCACATAGGTGTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGGTGAAATAAATAGACATAACCAGCTTTCACATAGGTGTTTTGT  200

seq1  AAGGATTACTATGCCAATGTACAGTGATAAGAAGGCACCTAATGTAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTACTATGCCAATGTACAGTGATAAGAAGGCACCTAATGTAAATA  250

seq1  GATAAATCCAAAGTGAAGGCAGAGATGCAGGACTTCCTGATTTAGGTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATCCAAAGTGAAGGCAGAGATGCAGGACTTCCTGATTTAGGTTAC  300

seq1  CTTGTAGGCACACATTAGACAATGCTTTTTAGAAAAATCAATGTCTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGGCACACATTAGACAATGCTTTTTAGAAAAATCAATGTCTGTTG  350

seq1  TAGTTTAGGTTCAAAGGATATTGGAGAATACATAAGGAATCCGTACTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAGGTTCAAAGGATATTGGAGAATACATAAGGAATCCGTACTCTG  400

seq1  AGCTTTGTAAGTCCCTGTGGAACCCCACTTCTGTCTCTTATATTCAGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTAAGTCCCTGTGGAACCCCACTTCTGTCTCTTATATTCAGCTA  450

seq1  ATCTCCCTTCTTAGGAAGACAGCATAGAAACCTAGAGGGAACACGGGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCTTCTTAGGAAGACAGCATAGAAACCTAGAGGGAACACGGGGTC  500

seq1  TTTATGGACATGGTACCATCCAGTTGTATAATTAGAACTGAGTCTTCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGACATGGTACCATCCAGTTGTATAATTAGAACTGAGTCTTCAAG  550

seq1  TCCATTCGTCTTTGTGTGAGAAACACAGCTGCCTCTGGGAGTAACAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCGTCTTTGTGTGAGAAACACAGCTGCCTCTGGGAGTAACAGAAT  600

seq1  ATATGCTTTCCACCTTCCTGGGAGAAAGCCTGAATGGACAGGGCAGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTTTCCACCTTCCTGGGAGAAAGCCTGAATGGACAGGGCAGGTTT  650

seq1  TGGCCTTCCTGTCTGTTGCTCCACATCCCATACTGTTACAGCCTCCACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTCCTGTCTGTTGCTCCACATCCCATACTGTTACAGCCTCCACTT  700

seq1  CTCCACCCATTTCTGAAGCCATTCTGTCTCATATTGATGGAATCCAAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCCATTTCTGAAGCCATTCTGTCTCATATTGATGGAATCCAAGTC  750

seq1  CCTGCTTGTCGTCAGCTTAATGTGTAACATCACGGGTGAATCTTACTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTGTCGTCAGCTTAATGTGTAACATCACGGGTGAATCTTACTAAT  800

seq1  ATCTGCTCTCTAGGATCGCATGCGGCTTTGGTGGAAGCTTCCTCTGCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTCTCTAGGATCGCATGCGGCTTTGGTGGAAGCTTCCTCTGCCTA  850

seq1  TAAGAACTTACGTCCCATCCCGCCCCCCCCCCAAAGAGTATATTTGACCT  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAAGAACTTACGTCCCATCCCGCCCCCCCCCC-AAGAGTATATTTGACCT  899

seq1  ACTTCAAATTGAAACCTTGCTAATTTGATGTTTTTATCCATAAATTGTTA  950
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  ACTTCAAATTGAAACCTTGCTAA-TTGATGTTTTTATCCAT-AATTGTTA  947

seq1  CCTACCCAACTTTTATCTGAGAGACATTTTTTCTAAAAGTTATCTCATAA  1000
      |||||||||||||||||||||||||| ||||||| |||||||||||||||
seq2  CCTACCCAACTTTTATCTGAGAGACA-TTTTTCT-AAAGTTATCTCATAA  995

seq1  AGTACTTTTCTTTTGCCAAAAGAAATGTCTGGACTGGCAGATTTTACA-G  1049
      ||||||||||||||| |||||||||||||||||||||||||||||||| |
seq2  AGTACTTTTCTTTTGGCAAAAGAAATGTCTGGACTGGCAGATTTTACAGG  1045

seq1  CTAAAGCAACAGTAAGTTAAA-GCACAATGAGGTCATTGAAAGAACAATA  1098
      |||| || ||||||||||||| |||||  ||||||| || ||||||||||
seq2  CTAAGGC-ACAGTAAGTTAAAGGCACATGGAGGTCAATG-AAGAACAATA  1093

seq1  CTGGGCAATCGCA-GCACTTGGATTCTTGGCTCTATTCAGTCTAGAAAGC  1147
      |||||| |||||| ||||||||| |||| |||||| ||||||||| ||||
seq2  CTGGGC-ATCGCAGGCACTTGGA-TCTT-GCTCTAATCAGTCTAGGAAGC  1140

seq1  ACT-GAGAGATTTCTTCCTCAACGTCCTTTCAGCCTC-AGTTCT-GAAAG  1194
      ||| ||||   ||||| ||| |||||||| ||||||| |||||| |||||
seq2  ACTGGAGAAGATTCTT-CTCTACGTCCTTACAGCCTCAAGTTCTGGAAAG  1189

seq1  --CAAGA  1199
        |||||
seq2  GCCAAGA  1196


seq1: chr14_103437789_103438321
seq2: B6Ng01-347E22.g_67_599 (reverse)

seq1  CCTCCTATATTATACAGATCCTATCTGAGATGATTCCTTGATATACACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTATATTATACAGATCCTATCTGAGATGATTCCTTGATATACACAT  50

seq1  CAACCGTTGGAACAGATATTGAACCTCTCTCTAAGCTTCCCCAATCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCGTTGGAACAGATATTGAACCTCTCTCTAAGCTTCCCCAATCTGGA  100

seq1  TCATGGTTGGAAATGCCAGTTCAGGCTTACAAACAGCATCTAAACATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTTGGAAATGCCAGTTCAGGCTTACAAACAGCATCTAAACATGGC  150

seq1  CAGGTCCTCAAACTATGACCAAAAATCCTTTCCTTTGACTCTTGATTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTCAAACTATGACCAAAAATCCTTTCCTTTGACTCTTGATTGAC  200

seq1  CACTTAGGATAACCAGAATACCTAGTCTTTTCTGACTATCCTCCAAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGGATAACCAGAATACCTAGTCTTTTCTGACTATCCTCCAAGTTT  250

seq1  CTTTCTCTTACATGTTTTGCTCAGTGCACGCCTAGGCGTCAGGGTGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTTACATGTTTTGCTCAGTGCACGCCTAGGCGTCAGGGTGAAGA  300

seq1  TGAAGAGTGTGTTTGGCACAATGCTGTGATCTGAGCAGCCTTTGGGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGTGTGTTTGGCACAATGCTGTGATCTGAGCAGCCTTTGGGAAGT  350

seq1  GGCTGGGAGAGGGTGAACAGCACAGCAGTCAGTCTTCCGCAGCTTCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGAGAGGGTGAACAGCACAGCAGTCAGTCTTCCGCAGCTTCAAGT  400

seq1  GTGATAGCCCTATGTTCCCACAAGGTAGCCTCCCGGTGACATCCAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGCCCTATGTTCCCACAAGGTAGCCTCCCGGTGACATCCAAATGA  450

seq1  TTATTAGAAAGTATTACAAATTGAAAGCTCTCCGGAGGCTTCCTTCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGAAAGTATTACAAATTGAAAGCTCTCCGGAGGCTTCCTTCAGAG  500

seq1  TGTCAGGGAAGAGCAGCTCTTGGCAGAGAATTC  533
      |||||||||||||||||||||||||||||||||
seq2  TGTCAGGGAAGAGCAGCTCTTGGCAGAGAATTC  533


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