BAC Information

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BAC

Clone NameB6Ng01-349J08
Chromosome14 (Build37)
Map Location 112,105,249 - 112,106,467
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494, Slitrk5
Downstream geneLOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349J08.bB6Ng01-349J08.g
ACCGA130538GA130539
length1,2201,168
definitionB6Ng01-349J08.b B6Ng01-349J08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgtgaatgaacagtcttcatgaagcaagcaaatgagtacatga
agctgaatcagagttttgaggaaggtcacctgactttgtaggtcataaca
gtgtttctttccgggcgaaatgccaagtagaaaatttcctcaagaagcat
aactacctccttattaagaagcaaaccccactgtcagcaatagttgatca
gcagcctcagcagcgaagctttacctgtagaaatatctcctatgagagta
gagaatggcgtgtgtccttacatcttggctcagcctgtgatttgtgattg
cacatggaggagaagcacttcaagctacatcgtcacccattttggttgat
gcttcctcctttttataggtcagccgtggcacgaaatgtgggaagcaggc
gtgatgagatggcatgagaggtttttggttttcaagcatatgtaatcaag
gtttgagatcagattacacctgtagtgcactgatcttttctaggacccct
gaacctgacagtcttataagaaacatcactggtggtcacttggtgtgtac
ttgtttctccttaatggtaatagcagtgatattgtgctgccttgttaata
gtgaaacatgaaacaatccatagttttaatatataatctaatgcacgctg
tattttaaaatttatttaggctttgactttgtggtgtatgtgattatatt
cactactattatcttctgctatattgtctcatgatgatagaaatactgct
ttagtcctgaaacaaaggtaaaagaaataaaaatagctaacattgtaatt
aaatattaggtatgattccaaatataaaagcaatgacaatttgaaaacaa
atgctatattctattgtaaagatgtttggaaagataaaaacacacaaggc
aacgttattgccaattgagtcatcttcatgagatcattatgcagtttcaa
gtgtgttatgatttcctctttatgtttgaaatcttaacttgcagtgtctt
ggcaaaaatactgttagtctgctatagtattttggatattacctaattat
agataacatctcttagcattaattatggattatatttcaggattttttat
tcttacaggattttccacatgcaggtatggcttaatggaaattatctaag
ttaacttaaacgtgagactttgcctacacattattgatattgtctgcatt
ccaggccagtcaccgaagaa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacattcttaataatcagaaaaatgcaaagcaaagcaaccctgagat
tctacctcacaccagtcagaatggcttagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggaa
agattacaagcttgaacaaccactctagaaatcagtctggaggttcatca
gaaaattggacatagtactatcgaaggatcccacaatacctctcctgggc
atatatccagaagatgttccaactggcaataaggacacatgctccactat
gttcatagaaacctcatttataatagccaaaagttggaaataacccagat
gtccctcagcagaggactggatacagaaaatgtgtttcatttacacaatg
gagtactactcagctattaaaaacaatgaatttatgaaattctgaggcaa
atggatcaatctgaacactatcatcctgagtgaggtaacacaattacaaa
agaattcacatgatattttctcactggtaagtggatattagcccagaaac
ttagaatacccaagatacaatttgcaaaacacatgaaactcaagaagaac
aaagaccaatgtgtgacccctcaccccttcttagaatgggaacaaaacat
tcaaggaaggagttacagagacaaagtttagagctgagagaaaaggatgg
accatccagagactgcagtaccatgggatccatgccataatcagccacca
aacacagacactattgcatatgccaacaagatttttgctgatatgaccct
gatatagctgtctcttgtgaggtatgccagtgcctgacaaacatagaagt
ggatgctcacagtcagctatggatgggaacactgaatgacagtggtaaat
ctagagaaaatacccaaggagctaaggggtctgcaaccctaatagtggaa
caacaaatatgaactacagttacccattagctaggtgtctctagctgcat
atgtagcaaagattgctagtgtcaatcatttgtatagagatagccctgac
ttgcaaacctatatgttctatgcgggaatgcaaggtccagaaggggatat
ggtagggttcgggaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_112105249_112106467
seq2: B6Ng01-349J08.b_46_1265

seq1  GAATTCTTGTGAATGAACAGTCTTCATGAAGCAAGCAAATGAGTACATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTGAATGAACAGTCTTCATGAAGCAAGCAAATGAGTACATGA  50

seq1  AGCTGAATCAGAGTTTTGAGGAAGGTCACCTGACTTTGTAGGTCATAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATCAGAGTTTTGAGGAAGGTCACCTGACTTTGTAGGTCATAACA  100

seq1  GTGTTTCTTTCCGGGCGAAATGCCAAGTAGAAAATTTCCTCAAGAAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTTTCCGGGCGAAATGCCAAGTAGAAAATTTCCTCAAGAAGCAT  150

seq1  AACTACCTCCTTATTAAGAAGCAAACCCCACTGTCAGCAATAGTTGATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACCTCCTTATTAAGAAGCAAACCCCACTGTCAGCAATAGTTGATCA  200

seq1  GCAGCCTCAGCAGCGAAGCTTTACCTGTAGAAATATCTCCTATGAGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTCAGCAGCGAAGCTTTACCTGTAGAAATATCTCCTATGAGAGTA  250

seq1  GAGAATGGCGTGTGTCCTTACATCTTGGCTCAGCCTGTGATTTGTGATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGGCGTGTGTCCTTACATCTTGGCTCAGCCTGTGATTTGTGATTG  300

seq1  CACATGGAGGAGAAGCACTTCAAGCTACATCGTCACCCATTTTGGTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGAGGAGAAGCACTTCAAGCTACATCGTCACCCATTTTGGTTGAT  350

seq1  GCTTCCTCCTTTTTATAGGTCAGCCGTGGCACGAAATGTGGGAAGCAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCCTTTTTATAGGTCAGCCGTGGCACGAAATGTGGGAAGCAGGC  400

seq1  GTGATGAGATGGCATGAGAGGTTTTTGGTTTTCAAGCATATGTAATCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAGATGGCATGAGAGGTTTTTGGTTTTCAAGCATATGTAATCAAG  450

seq1  GTTTGAGATCAGATTACACCTGTAGTGCACTGATCTTTTCTAGGACCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGATCAGATTACACCTGTAGTGCACTGATCTTTTCTAGGACCCCT  500

seq1  GAACCTGACAGTCTTATAAGAAACATCACTGGTGGTCACTTGGTGTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGACAGTCTTATAAGAAACATCACTGGTGGTCACTTGGTGTGTAC  550

seq1  TTGTTTCTCCTTAATGGTAATAGCAGTGATATTGTGCTGCCTTGTTAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTCCTTAATGGTAATAGCAGTGATATTGTGCTGCCTTGTTAATA  600

seq1  GTGAAACATGAAACAATCCATAGTTTTAATATATAATCTAATGCACGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACATGAAACAATCCATAGTTTTAATATATAATCTAATGCACGCTG  650

seq1  TATTTTAAAATTTATTTAGGCTTTGACTTTGTGGTGTATGTGATTATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAAATTTATTTAGGCTTTGACTTTGTGGTGTATGTGATTATATT  700

seq1  CACTACTATTATCTTCTGCTATATTGTCTCATGATGATAGAAATACTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTATTATCTTCTGCTATATTGTCTCATGATGATAGAAATACTGCT  750

seq1  TTAGTCCTGAAACAAAGGTAAAAGAAATAAAAATAGCTAACATTGTAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCTGAAACAAAGGTAAAAGAAATAAAAATAGCTAACATTGTAATT  800

seq1  AAATATTAGGTATGATTCCAAATATAAAAGCAATGACAATTTGAAAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAGGTATGATTCCAAATATAAAAGCAATGACAATTTGAAAACAA  850

seq1  ATGCTATATTCTATTGTAAAGATGTTTGGAAAGATAAAAACACACAAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATATTCTATTGTAAAGATGTTTGGAAAGATAAAAACACACAAGGC  900

seq1  AACGTTATTGCCAATTGAGTCATCTTCATGAGATCA-TATGCAGTTTCAA  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AACGTTATTGCCAATTGAGTCATCTTCATGAGATCATTATGCAGTTTCAA  950

seq1  GGTGTGTTATGATTTCCTCTTTATGTTTGAAATC-TAACTTGCAGTGTCT  998
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  -GTGTGTTATGATTTCCTCTTTATGTTTGAAATCTTAACTTGCAGTGTCT  999

seq1  TGGC-AAAATACTGTTAGTCTGCTATTAGTATTTTGGATA-TACCTAATT  1046
      |||| |||||||||||||||||||| |||||||||||||| |||||||||
seq2  TGGCAAAAATACTGTTAGTCTGCTA-TAGTATTTTGGATATTACCTAATT  1048

seq1  ATAGATAAACCATCTC-TAGCATTAATTATTGTATTATATTTCAGTATTT  1095
      ||||||||  |||||| |||||||||||| || |||||||||||| ||||
seq2  ATAGATAA--CATCTCTTAGCATTAATTA-TGGATTATATTTCAGGATTT  1095

seq1  TTATTTCTTACAGTATTTTTCACATGCAGTATTTGCTTAATGGAAATAAT  1145
      ||  ||||||||| ||||| |||||||||   | ||||||||||||| ||
seq2  TTTATTCTTACAGGATTTTCCACATGCAGGTATGGCTTAATGGAAATTAT  1145

seq1  CTAAGTTTAACTAAAACGTGAAGACTTTAGCTACACATTA-TGATATTGT  1194
      ||||| |||||| ||||||| |||||||  |||||||||| |||||||||
seq2  CTAAG-TTAACTTAAACGTG-AGACTTTGCCTACACATTATTGATATTGT  1193

seq1  CTGCATT-CAGGCCTGT-AACGAAGAA  1219
      ||||||| |||||| || | |||||||
seq2  CTGCATTCCAGGCCAGTCACCGAAGAA  1220