BAC Information

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BAC

Clone NameB6Ng01-350K20
Chromosome14 (Build37)
Map Location 12,429,475 - 12,430,625
singlet/doubletsinglet
Overlap genePtprg
Upstream geneFhit, LOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996
Downstream geneLOC100042441, 3830406C13Rik, EG667072, Fezf2, Cadps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350K20.bB6Ng01-350K20.g
ACCGA131278GA131279
length1,2021,159
definitionB6Ng01-350K20.b B6Ng01-350K20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacacgtagggatcctggggacgcgggcttcaactgcatgagatc
ttcccgatgttctgaggccctgcctagtcctgcctcccatcttttctgcc
acaattattaactaccaaaatgttcttgcaccaccgtgtctgtgctcctt
gaactgacacaatgacagagacaagcagtttgctctctgtggggaccatg
cacagcactctattttaataagaatacaaaacctttcccaccttttttcc
tattttaataaaaacttccttggtcagaactttccaactcaacattcatt
cattcatccccctgaccccacccaccttgctttaaaaaggaaaaaaaaaa
aaagattagggatggtatataaacctggggattagcccaggaccttatcc
tgcaagtacagggtagaccaccctagcttggctagcatgcacttcacaaa
gaaccatgctgcaaccctcccattcagttcatcttgttcacacagcacgc
tgacagccttgcatgtctccttctctggtggtaactacaattcccagttt
agaacatgcaaggggagatggctcagagggtaagagtgcttactgtgcaa
gcatgagaaaaacgagttcagacttccagctcccatggaaaaagcagagc
tcccatggtccacacatggaacctcatggctcagaggtcaggggtataag
gagagacagctggatcactggggctctggatagctccaggttcaatgaga
aacctcatctcaaggaagtaaagctgagaatgatgtggacggccctggtg
ctgttgtatttttggtgttaattccgcttccccaggaggggctatctgaa
ccaaggtgactcaggtgacttcttgggaaccatgccctaatgaataaagg
gatctatcactgggcgagtaggcgggacttcctgggttcgacagagaaag
ataggaaacaggagagaggggctttttgaacagggatagcaggagggcca
agaatgtagctacagtgtcctccgagcttaaaatgggattcgcccaccag
gatgggatttaggagtaatattgcttacagattaggaatctagtgttgtg
tcagcgatgagttaccatggttctgacctaggttgcatgggtacctgcaa
tggcagcttagactggtctagaagacacagctacttgtcaaaagccatca
tg
gaattctcctctgtcttcttgctatgggaacactaggattccagatgtgt
gctactgtgaacattatgtgggttctggggtacccaacccaggtcctcat
gcttacatagcaaatgctttagacactgggctctcaacagcttccgtgat
actggtttgctgggaaataacttgtagcgtcttagcaccttggagttttg
gatggctgctctgtctcttgtggtagtatctcttaagcaccttttcccct
ccagtttcgaaggcttggcagggtgtcccaccctcagactctgcatgcac
tcttcccatcagcgattaaagagaaaaagttgcaacagtaacagcaccat
aaaataacggtgtcacccgactatacctgggctcatccctatacagattt
attatcttcctctggaggcttgggttccggttttcaataagcaaggagag
cctgtaaatgatcacaattgaaatgcaccgtacagttctcagacctcatt
caaatatgccagagcaaagggaaggtacttagaaccctgtgacctctcag
tcgccttcagatctgtggcgctttcccaggctcgctctcgggatccttga
tgcatctgtagataccacaccacttagtgtgtggaccacctcttagtttt
gccttgtctgctgctcgtcttccatcatcctgattgaggtcctttctgtc
aggtggcacatgatgtgctcacgtgttcagctttgggtacttgatgaagg
tggcgtctgctgggattccctagcctaacgtcacccctttccacctcccg
tgcagctttctgatgctatctatggctgtgaagctttagcctgcccattt
actatatgactgctggcttaataacattctatttttattttaatggggtg
taattccttcattgtttcttttggttatacaggcacctttgcatttagag
agtggcttcctaggtccctttagactttctgaattatttttatttctaat
actttcttaatcccaggcacacttgtgtttttgctggatctgcttgggtt
gtggctcaggacgagtagtcagtgggctttgtaatcccaacagaggagac
tgaatgttatagaaggccagactgacttgtaatgtgccgatggcctctgg
ggggattgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_12429475_12430625
seq2: B6Ng01-350K20.g_67_1225

seq1  GAATTCTCCTCTGTCTTCTTGCTATGGGAACACTAGGATTCCAGATGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCTGTCTTCTTGCTATGGGAACACTAGGATTCCAGATGTGT  50

seq1  GCTACTGTGAACATTATGTGGGTTCTGGGGTACCCAACCCAGGTCCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGTGAACATTATGTGGGTTCTGGGGTACCCAACCCAGGTCCTCAT  100

seq1  GCTTACATAGCAAATGCTTTAGACACTGGGCTCTCAACAGCTTCCGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACATAGCAAATGCTTTAGACACTGGGCTCTCAACAGCTTCCGTGAT  150

seq1  ACTGGTTTGCTGGGAAATAACTTGTAGCGTCTTAGCACCTTGGAGTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTTGCTGGGAAATAACTTGTAGCGTCTTAGCACCTTGGAGTTTTG  200

seq1  GATGGCTGCTCTGTCTCTTGTGGTAGTATCTCTTAAGCACCTTTTCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTGCTCTGTCTCTTGTGGTAGTATCTCTTAAGCACCTTTTCCCCT  250

seq1  CCAGTTTCGAAGGCTTGGCAGGGTGTCCCACCCTCAGACTCTGCATGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCGAAGGCTTGGCAGGGTGTCCCACCCTCAGACTCTGCATGCAC  300

seq1  TCTTCCCATCAGCGATTAAAGAGAAAAAGTTGCAACAGTAACAGCACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCATCAGCGATTAAAGAGAAAAAGTTGCAACAGTAACAGCACCAT  350

seq1  AAAATAACGGTGTCACCCGACTATACCTGGGCTCATCCCTATACAGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACGGTGTCACCCGACTATACCTGGGCTCATCCCTATACAGATTT  400

seq1  ATTATCTTCCTCTGGAGGCTTGGGTTCCGGTTTTCAATAAGCAAGGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTCCTCTGGAGGCTTGGGTTCCGGTTTTCAATAAGCAAGGAGAG  450

seq1  CCTGTAAATGATCACAATTGAAATGCACCGTACAGTTCTCAGACCTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAATGATCACAATTGAAATGCACCGTACAGTTCTCAGACCTCATT  500

seq1  CAAATATGCCAGAGCAAAGGGAAGGTACTTAGAACCCTGTGACCTCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGCCAGAGCAAAGGGAAGGTACTTAGAACCCTGTGACCTCTCAG  550

seq1  TCGCCTTCAGATCTGTGGCGCTTTCCCAGGCTCGCTCTCGGGATCCTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTTCAGATCTGTGGCGCTTTCCCAGGCTCGCTCTCGGGATCCTTGA  600

seq1  TGCATCTGTAGATACCACACCACTTAGTGTGTGGACCACCTCTTAGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTGTAGATACCACACCACTTAGTGTGTGGACCACCTCTTAGTTTT  650

seq1  GCCTTGTCTGCTGCTCGTCTTCCATCATCCTGATTGAGGTCCTTTCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTCTGCTGCTCGTCTTCCATCATCCTGATTGAGGTCCTTTCTGTC  700

seq1  AGGTGGCACATGATGTGCTCACGTGTTCAGCTTTGGGTACTTGATGAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCACATGATGTGCTCACGTGTTCAGCTTTGGGTACTTGATGAAGG  750

seq1  TGGCGTCTGCTGGGATTCCCTAGCCTAACGTCACCCCTTTCCACCTCCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTCTGCTGGGATTCCCTAGCCTAACGTCACCCCTTTCCACCTCCCG  800

seq1  TGCAGCTTTCTGATGCTATCTATGGCTGTGAAGCTTTAGCCTGCCCATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTTTCTGATGCTATCTATGGCTGTGAAGCTTTAGCCTGCCCATTT  850

seq1  ACTATATGACTGCTGGCTTAATAACATTCTATTTT--ATTTAATGGGGTG  898
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  ACTATATGACTGCTGGCTTAATAACATTCTATTTTTATTTTAATGGGGTG  900

seq1  TAATTCC-TCATTG-TTCTTT--GGTATACAGGCCACCTTGCATTTAGAG  944
      ||||||| |||||| ||||||  | |||||||||  | ||||||||||||
seq2  TAATTCCTTCATTGTTTCTTTTGGTTATACAGGCACCTTTGCATTTAGAG  950

seq1  AGTGGC-TCCTAGGTCCCTTTAGAACTTTCTGAATTATTTT--ATTCTAA  991
      |||||| |||||||||||||||| |||||||||||||||||   ||||||
seq2  AGTGGCTTCCTAGGTCCCTTTAG-ACTTTCTGAATTATTTTTATTTCTAA  999

seq1  TACTTTCTTAATCCCAGGCACAC-TGTG-TTTTGCTGGATCCTGCTTGGG  1039
      ||||||||||||||||||||||| |||| ||||||||||| |||||||||
seq2  TACTTTCTTAATCCCAGGCACACTTGTGTTTTTGCTGGAT-CTGCTTGGG  1048

seq1  TTTGTGGCCCAGGAACGGAGTAGTCAGTGGGC-TTGTAATCCCCACCAGA  1088
       ||||||| |||||   ||||||||||||||| ||||||| |||| ||||
seq2  -TTGTGGCTCAGGA--CGAGTAGTCAGTGGGCTTTGTAAT-CCCAACAGA  1094

seq1  GGAGACTG-ATG-TATAGAA-GCCAGAACTAGACCTTGT-ATGTGCCGAT  1134
      |||||||| ||| ||||||| ||||| ||| || ||||| ||||||||||
seq2  GGAGACTGAATGTTATAGAAGGCCAG-ACT-GA-CTTGTAATGTGCCGAT  1141

seq1  TGCTCCTGGGGGG-TTGC  1151
       ||  |||||||| ||||
seq2  GGCCTCTGGGGGGATTGC  1159