BAC Information

Click to search

BAC

Clone NameB6Ng01-350P02
Chromosome14 (Build37)
Map Location 21,900,088 - 22,054,404
singlet/doubletdoublet
Overlap geneAdk
Upstream gene1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1
Downstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350P02.bB6Ng01-350P02.g
ACCGA131464GA131465
length1,0221,080
definitionB6Ng01-350P02.b B6Ng01-350P02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,900,088 - 21,901,106)(22,053,348 - 22,054,404)
sequence
gaattctttactagtttgctcaacaaagataataataaataataatgcct
cccctattattggtactttgtgaaaatttaaaaaggagagagcctattcc
tgcacattgtcctctgacacccaccaagtagcacatgtgtgcacgcacgt
gcgcgcacacacacacacacacacacacacacacacacagaacaaataat
aaatatataaaaacacttttctatagcacagaggaactggctgtttagtg
gagcctttacagggtttatctgtagccctggctgtcctggaactcactct
gtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccg
agtgctgggatcaaaggcgtgcgccaccacacccggctgcctttacttct
ttttaaaactgttttactgtgaggagagcagggaactaatagagaagtca
ggaatacactctggaatgaagattttgggagctagggattgaaatttcaa
caagttagaatgttgaaaagagtttcccaataggaagattaaaaaagcag
ataatgctggtcagagatgaaatattctagaatgtgcaacaaagataaga
attagtatacaaatgtaagggttatatagctaaaggccacacattacccc
tgttagtttatattttttatgccaacagtatatatgctgtaaaatcatag
agcctgcatttaacatttttttctcattgctggagactgaacctctttta
tcacatatgctacaccattgggctacattcccttgtagctgaatgttgac
agtatagttacttgcacaaacagcactcagccttagatacaggacagttt
ttgagaagttctctttcagctccttttcaattaatcctgttcccttcacc
acccaggcagctgctatcgttcttctattaacagaaacaaatttgcctat
tttgtaacttcgtaataaagagtcttgtacactaaggcctactcgagttt
tgtttatcatggacaattttga
gaattcctaaatagtacaaaagttaatcaaacacaaggttaaaatgactc
agggtttgctgaacattaaaaatgcttattaaagtgaagttacaaacagt
ccaaactgtttgtaattcagatttcgctggtgtctacacagctgtgggga
gggtgttccaggttggtagtgacttacctgttgccaccagtgatacacgc
agcacaagttcctgttggctgctcgttctgctcatagtaatgagcatcca
catgtgcgtcagcagccttacgcttcaggatctccccaaacttatctatc
ccaatgcatccaaagaatgttgctgctttgtgtggctcctgaatcaacca
ctgaaaaacataaatgaatggatgggtcagaagcggaatggagaactcag
gactctgccacgggtgctggcatgaaagatgtgctttgtagtgacgatga
atagaacctcaacaggtgcactaccgcttagagtaaaaaccttgacaaaa
cagccgttcacattcttctattacatgagcgatagatacagagtggacca
cttcagtgggtagtcatagataacaggtctttagaactcagaacataagt
tatatggactttaaatcaaatgctggctactttatacgtatatcaaagct
aaagtatcaatgtactttagaacacaggctaaactaaagctcacagctgt
gctcctgtctcggcctcttaaattctgggatacaaatacaagccaccatc
ttgggcatcacttaaccttttctacagcttccttttctaatctgtaaaat
tggggaaatgattaaaaacatgcttcatagggagggtgaagattaactga
aaataaaataagtcagttgtatattcaaactgaacatagtatcccagatt
acaattaggcaacacttttagctgtagtaatcaaaattttcaatactttc
ttaaaataaatttattacataaattatggctaaaacatactcatacttaa
ttactaatttaaaatgggtgcctggaggagggcatgcaaggttttccgaa
ggtttggaggccagcctgggtctatcagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_21900088_21901106
seq2: B6Ng01-350P02.b_50_1071

seq1  GAATTCTTTACTAGTTTGCTCAACAAAGATAATAATAAATAATAATGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACTAGTTTGCTCAACAAAGATAATAATAAATAATAATGCCT  50

seq1  CCCCTATTATTGGTACTTTGTGAAAATTTAAAAAGGAGAGAGCCTATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATTATTGGTACTTTGTGAAAATTTAAAAAGGAGAGAGCCTATTCC  100

seq1  TGCACATTGTCCTCTGACACCCACCAAGTAGCACATGTGTGCACGCACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATTGTCCTCTGACACCCACCAAGTAGCACATGTGTGCACGCACGT  150

seq1  GCGCGCACACACACACACACACACACACACACACACACAGAACAAATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCACACACACACACACACACACACACACACACACAGAACAAATAAT  200

seq1  AAATATATAAAAACACTTTTCTATAGCACAGAGGAACTGGCTGTTTAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATAAAAACACTTTTCTATAGCACAGAGGAACTGGCTGTTTAGTG  250

seq1  GAGCCTTTACAGGGTTTATCTGTAGCCCTGGCTGTCCTGGAACTCACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTTACAGGGTTTATCTGTAGCCCTGGCTGTCCTGGAACTCACTCT  300

seq1  GTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCG  350

seq1  AGTGCTGGGATCAAAGGCGTGCGCCACCACACCCGGCTGCCTTTACTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGATCAAAGGCGTGCGCCACCACACCCGGCTGCCTTTACTTCT  400

seq1  TTTTAAAACTGTTTTACTGTGAGGAGAGCAGGGAACTAATAGAGAAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAACTGTTTTACTGTGAGGAGAGCAGGGAACTAATAGAGAAGTCA  450

seq1  GGAATACACTCTGGAATGAAGATTTTGGGAGCTAGGGATTGAAATTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATACACTCTGGAATGAAGATTTTGGGAGCTAGGGATTGAAATTTCAA  500

seq1  CAAGTTAGAATGTTGAAAAGAGTTTCCCAATAGGAAGATTAAAAAAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAGAATGTTGAAAAGAGTTTCCCAATAGGAAGATTAAAAAAGCAG  550

seq1  ATAATGCTGGTCAGAGATGAAATATTCTAGAATGTGCAACAAAGATAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCTGGTCAGAGATGAAATATTCTAGAATGTGCAACAAAGATAAGA  600

seq1  ATTAGTATACAAATGTAAGGGTTATATAGCTAAAGGCCACACATTACCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTATACAAATGTAAGGGTTATATAGCTAAAGGCCACACATTACCCC  650

seq1  TGTTAGTTTATATTTTTTATGCCAACAGTATATATGCTGTAAAATCATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTTTATATTTTTTATGCCAACAGTATATATGCTGTAAAATCATAG  700

seq1  AGCCTGCATTTAACA-TTTTTTCTCATTGCTGGAGACTGAACCTCTTTTA  749
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCCTGCATTTAACATTTTTTTCTCATTGCTGGAGACTGAACCTCTTTTA  750

seq1  TCACATATGCTACACCATTGGGCTACATTCCCTTGTAGCTGAATGTTGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATATGCTACACCATTGGGCTACATTCCCTTGTAGCTGAATGTTGAC  800

seq1  AGTATAGTTACTTGCACAAACAGCACTCAGCCTTAGATACAGGACAGTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGTTACTTGCACAAACAGCACTCAGCCTTAGATACAGGACAGTTT  850

seq1  TTGAGAAGTTCTCTTTCAGCTCCTTTTCAATTAATCCTGTTCCCCTCACC  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTGAGAAGTTCTCTTTCAGCTCCTTTTCAATTAATCCTGTTCCCTTCACC  900

seq1  ACCCAGGCAGCTGCTTTCGTTCTTCTATTAACAGTAACTAATTTGCCTAT  949
      ||||||||||||||| |||||||||||||||||| ||| |||||||||||
seq2  ACCCAGGCAGCTGCTATCGTTCTTCTATTAACAGAAACAAATTTGCCTAT  950

seq1  TTTGTAACTTCGT-ATAAAGAGTCTTGTACACTAAGGGCTACTCGAGTTT  998
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  TTTGTAACTTCGTAATAAAGAGTCTTGTACACTAAGGCCTACTCGAGTTT  1000

seq1  TGTTTATCAT-GACAATTTTGA  1019
      |||||||||| |||||||||||
seq2  TGTTTATCATGGACAATTTTGA  1022

seq1: chr14_22053348_22054404
seq2: B6Ng01-350P02.g_72_1151 (reverse)

seq1  CTCTG-TAGA-CCAGGCTGGCCT-CAAAC--TCAGAAA--CCTGCCTGCC  43
      ||||| |||| |||||||||||| |||||  || ||||  | ||| ||||
seq2  CTCTGATAGACCCAGGCTGGCCTCCAAACCTTCGGAAAACCTTGCATGCC  50

seq1  --TCTTCAGGCA-CCATTTTAAA-TAGTAATTAAGTATGAGTATGTTTTA  89
         || |||||| |||||||||| ||||||||||||||||||||||||||
seq2  CTCCTCCAGGCACCCATTTTAAATTAGTAATTAAGTATGAGTATGTTTTA  100

seq1  G-CATAATTTATGT-ATAAA-TTATTTTAAG-AAGTA-TAAAAATTTTGA  134
      | |||||||||||| ||||| |||||||||| ||||| | ||||||||||
seq2  GCCATAATTTATGTAATAAATTTATTTTAAGAAAGTATTGAAAATTTTGA  150

seq1  TTACTACAGCTTAAAAGTGTTG-CTTATTGT-ATCTTGGATACTATGTTC  182
      |||||||||| ||||||||||| || ||||| |||| |||||||||||||
seq2  TTACTACAGC-TAAAAGTGTTGCCTAATTGTAATCTGGGATACTATGTTC  199

seq1  AGTTTGAATATAC-ACTGACTTATTTTA-TTTCAGTTAATCTTCACCCTC  230
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  AGTTTGAATATACAACTGACTTATTTTATTTTCAGTTAATCTTCACCCTC  249

seq1  CCTATGAAGCATGTTTTTAATCATTTCCCC-ATTTTACAGATTAGAAAAG  279
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTATGAAGCATGTTTTTAATCATTTCCCCAATTTTACAGATTAGAAAAG  299

seq1  GAAGCTGTAG-AAAGGTTAAGTGATG-CCAAGATGGTGGCTTGTATTTGT  327
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  GAAGCTGTAGAAAAGGTTAAGTGATGCCCAAGATGGTGGCTTGTATTTGT  349

seq1  AATCCCAGAATTTAAGAGGCCGAGACAGGAGCACAGCTGTGAGCTTTAGT  377
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ATCCCAGAATTTAAGAGGCCGAGACAGGAGCACAGCTGTGAGCTTTAGT  398

seq1  TTAGCCTGTGTTCTAAAGTACATTGATAC-TTAGCTTTGATATACGTAT-  425
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  TTAGCCTGTGTTCTAAAGTACATTGATACTTTAGCTTTGATATACGTATA  448

seq1  AAGTAGCCAGCATTTGATTTAAAGTCCATATAACTTATGTTCTGAGTTCT  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCCAGCATTTGATTTAAAGTCCATATAACTTATGTTCTGAGTTCT  498

seq1  AAAGACCTGTTATCTATGACTACCCACTGAAGTGGTCCACTCTGTATCTA  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCTGTTATCTATGACTACCCACTGAAGTGGTCCACTCTGTATCTA  548

seq1  TCGCTCATGTAATAGAAGAATGTGAACGGCTGTTTTGTCAAGGTTTTTAC  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCATGTAATAGAAGAATGTGAACGGCTGTTTTGTCAAGGTTTTTAC  598

seq1  TCTAAGCGGTAGTGCACCTGTTGAGGTTCTATTCATCGTCACTACAAAGC  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCGGTAGTGCACCTGTTGAGGTTCTATTCATCGTCACTACAAAGC  648

seq1  ACATCTTTCATGCCAGCACCCGTGGCAGAGTCCTGAGTTCTCCATTCCGC  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTCATGCCAGCACCCGTGGCAGAGTCCTGAGTTCTCCATTCCGC  698

seq1  TTCTGACCCATCCATTCATTTATGTTTTTCAGTGGTTGATTCAGGAGCCA  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACCCATCCATTCATTTATGTTTTTCAGTGGTTGATTCAGGAGCCA  748

seq1  CACAAAGCAGCAACATTCTTTGGATGCATTGGGATAGATAAGTTTGGGGA  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGCAGCAACATTCTTTGGATGCATTGGGATAGATAAGTTTGGGGA  798

seq1  GATCCTGAAGCGTAAGGCTGCTGACGCACATGTGGATGCTCATTACTATG  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGAAGCGTAAGGCTGCTGACGCACATGTGGATGCTCATTACTATG  848

seq1  AGCAGAACGAGCAGCCAACAGGAACTTGTGCTGCGTGTATCACTGGTGGC  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAACGAGCAGCCAACAGGAACTTGTGCTGCGTGTATCACTGGTGGC  898

seq1  AACAGGTAAGTCACTACCAACCTGGAACACCCTCCCCACAGCTGTGTAGA  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTAAGTCACTACCAACCTGGAACACCCTCCCCACAGCTGTGTAGA  948

seq1  CACCAGCGAAATCTGAATTACAAACAGTTTGGACTGTTTGTAACTTCACT  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCGAAATCTGAATTACAAACAGTTTGGACTGTTTGTAACTTCACT  998

seq1  TTAATAAGCATTTTTAATGTTCAGCAAACCCTGAGTCATTTTAACCTTGT  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAGCATTTTTAATGTTCAGCAAACCCTGAGTCATTTTAACCTTGT  1048

seq1  GTTTGATTAACTTTTGTACTATTTAGGAATTC  1057
      ||||||||||||||||||||||||||||||||
seq2  GTTTGATTAACTTTTGTACTATTTAGGAATTC  1080