BAC Information

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BAC

Clone NameMSMg01-047G02
Chromosome14 (Build37)
Map Location 83,662,660 - 83,721,168
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047G02.T7 (MSMg01no047_g02.b1)MSMg01-047G02.TJ (MSMg01no047_g02.g1)
ACCAG277477AG277478
length620698
length of high quality
(start - end)		292 (46 - 337)587 (76 - 662)
definitionCHROMAT_FILE: MSMg01no047_g02.b1 PHD_FILE: MSMg01no047_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:42 2005CHROMAT_FILE: MSMg01no047_g02.g1 PHD_FILE: MSMg01no047_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,662,660 - 83,662,947)(83,720,661 - 83,721,168)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCAACAGCTCACAAAGAAAGTATTTTACTCTTAATGTCTGATC
CAAACTCTTCTGTGTTCATTATTTTAAAGATTGAAGAAGTATGGCTCAAA
GTTTTGTAATATAGGCCCATAACATTCTGAAATACACCGCTTTTTATTAC
ATTTGGTATTGTTTTACTCAGACAATAAGCTACAATGGAGATCAGTGTCC
TTGCAATGTCATCTTCTACTCCTACCAGGTAACACATGTGTTAACACAGA
CACAGGTTGCTTCTGTTTCTATACCTATTCCTGCAAGATTGTGGTTTTCT
CCATGGTGTCACTGTTGTCAAAGGTTGTTGGAAGGGATAAGTAAATACAA
ACGGCTGCCTGTAAGGTCGTCCCCCGAAGGCCCCTGGTTTTCCCTCCATT
CTTTTTTCCCGTTGGAAAATTTTTATCTAAAAAGTGTTCCCCAAAAACCG
GTTTTTTTTCAAAAAATAATTTTTTTTCCCCCCCCGAGAAAAACTTATAC
AATACCCCCCTCGTTTTTCTCCCCCACCCCCCTCGGGGGGGCCGTCACCC
TTTATCCAATCTACCCAACT

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGTTATGCTGTTCTTTGTTTGTGT
GTTTAAAGTAATATATAAAATTCAAGGCATTATATTACCTGTACTTTCTG
GAATATTTTGATTCAAATTTTAAATCATCTAGATACATTTTTTATTCCAG
AACCTGCAATGTTGAATAGTTCATAAAACGTTAGCAATTTTCTTATATTA
GATGGTCAATAGTCTAAAATTGAAAGTATTAGTGATTGAAAATTTCATTT
TCAGTTCTTAACTCCAAGACTTAATAAATTATGTATTTTAATAAATTATT
GGGAAGGATTATCCTTGAAGTTATTGCTGAGTATCTTGTACGAACACAGA
TCAACTAATTAGGAAGTGTAAAAGTATTACTCCCAGCAGGTTCTATGGGT
TTATGCCAAGACGTGTTTTCCATCCTAGAGAGGCGATCTAAAGAAACATC
CATCAAACAATTCCCTAAAGGGCTAGGATTAGCCAAATCCTATTCTATTG
ATGTGGTGTATGGATTTGTTGCAGTGCCAGCTGTATTCCAAGATCATGGG
ACAAGCTTAATGTTAGTGACAGTTATGGACCATGCCAGTTGTTTGTACGC
TAAGACATTGGAATTGCCTAGCTTTGCTTAATAAAAGGCAAACTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_g02.b1 MSMg01no047_g02.b1 CHROMAT_FILE:
MSMg01no047_g02.b1 PHD_FILE: MSMg01no047_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:42 2005
         (292 letters)



>mm_chr14_83662456_83663147
          Length = 692

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactcaacagctcacaaagaaagtattttactcttaatgtctgatccaaactctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactcaacagctcacaaagaaagtattttactcttaatgtctgatccaaactctt 264

                                                                       
Query: 65  ctgtgttcattattttaaagattgaagaagtatggctcaaagttttgtaatataggccca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgtgttcattattttaaagattgaagaagtatggctcaaagttttgtaatataggccca 324

                                                                       
Query: 125 taacattctgaaatacaccgctttttattacatttggtattgttttactcagacaataag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taacattctgaaatacaccgctttttattacatttggtattgttttactcagacaataag 384

                                                                       
Query: 185 ctacaatggagatcagtgtccttgcaatgtcatcttctactcctaccaggtaacacatgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctacaatggagatcagtgtccttgcaatgtcatcttctactcctaccaggtaacacatgt 444

                                                           
Query: 245 gttaacacagacacaggttgcttctgtttctatacctattcctgcaag 292
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttaacacagacacaggttgcttctgtttctatacctattcctgcaag 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no047_g02.g1 MSMg01no047_g02.g1 CHROMAT_FILE:
MSMg01no047_g02.g1 PHD_FILE: MSMg01no047_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:42 2005
         (587 letters)



>mm_chr14_83720182_83721168
          Length = 987

 Score =  951 bits (492), Expect = 0.0
 Identities = 504/508 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  attttgattcaaattttaaatcatctagatacattttttattccagaacctgcaatgttg 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 attttgattcaaattttaaatcatctagatacattttttattccagaacctgcaatgttg 928

                                                                       
Query: 140 aatagttcataaaacgttagcaattttcttatattagatggtcaatagtctaaaattgaa 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 aatagttcataaaacgttagcaattttcttatattagatggtcaatagtctaaaattgaa 868

                                                                       
Query: 200 agtattagtgattgaaaatttcattttcagttcttaactccaagacttaataaattatgt 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 agtattagtgattgaaaatttcattttcagttcttaactccaagacttaataaattatgt 808

                                                                       
Query: 260 attttaataaattattgggaaggattatccttgaagttattgctgagtatcttgtacgaa 319
           ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 807 attttaataaattattgggtaggatcatccttgaagttattgctgagtatcttgtacgaa 748

                                                                       
Query: 320 cacagatcaactaattaggaagtgtaaaagtattactcccagcaggttctatgggtttat 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 cacagatcaactaattaggaagtgtaaaagtattactcccagcaggttctatgggtttat 688

                                                                       
Query: 380 gccaagacgtgttttccatcctagagaggcgatctaaagaaacatccatcaaacaattcc 439
           |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 687 gccaaggcgtgttttccatcctagagaggctatctaaagaaacatccatcaaacaattcc 628

                                                                       
Query: 440 ctaaagggctaggattagccaaatcctattctattgatgtggtgtatggatttgttgcag 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ctaaagggctaggattagccaaatcctattctattgatgtggtgtatggatttgttgcag 568

                                                                       
Query: 500 tgccagctgtattccaagatcatgggacaagcttaatgttagtgacagttatggaccatg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgccagctgtattccaagatcatgggacaagcttaatgttagtgacagttatggaccatg 508

                                       
Query: 560 ccagttgtttgtacgctaagacattgga 587
           ||||||||||||||||||||||||||||
Sbjct: 507 ccagttgtttgtacgctaagacattgga 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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