BAC Information

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BAC

Clone NameMSMg01-047L08
Chromosome14 (Build37)
Map Location 52,834,528 - 52,835,111
singlet/doubletsinglet
Overlap geneChd8
Upstream geneEar11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h
Downstream geneRab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047L08.T7 (MSMg01no047_l08.b1)MSMg01-047L08.TJ (MSMg01no047_l08.g1)
ACCAG277680AG277681
length772698
length of high quality
(start - end)		65 (55 - 119)584 (77 - 660)
definitionCHROMAT_FILE: MSMg01no047_l08.b1 PHD_FILE: MSMg01no047_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:06 2005CHROMAT_FILE: MSMg01no047_l08.g1 PHD_FILE: MSMg01no047_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCCAGAGGATCCGCGGA
TTTCACTTTGTTTACCAGGCTGGCTTTGAACTCATAGATCGTCTACCTCT
TTAAAAATCTTAGAGAGAGAGACAGAGAGAGAGAGAGACGCGGTATTATG
CCCTTTTTCCCCTCTCTTTTCCCCCCCTTTCCCCCCCCCTTTTCCTCTTT
TTCCCCCCCTTTTTTCCTCTCCCCCCTTTTCCCCCTCTTTTCCTTCTTTC
TCTCCCTTTTCCTTTTTTTCTCTCCTTTTCTTCCTTCCCTCCTTCCCCCC
TTCTTTCTCTTTCTTTTTCTCCCTCTTTTTTTCTCTTTCCTCCCCCTTTT
TTCCCCTCTTCTCTTTCCCCTCCCTCCCCCCCCCTTTTTTTTTCCTCCCT
TTTTTTCTCCTCTTTTTCCCTTTCTCCTCTCCCCCTTTTCCCTCTTTCCC
CTCTTTTCCCCCCCCCCCTTCCTTTTTTTTTTTTTTCCCTCCTCTTTTTT
TCTCCCTCCTCTCCCCCCCCTCTTTTCCTCCCCCTCCCCCCCTTTCTTTT
TTTTTTCTTTCTCCTCCTCTTTCCCTTCCCCCTTCTTTTTTTTCTTTCTC
TTTCGTCTCTCCTCTCTTCTCCTCTTTCTCCCCCTCCCTCTTTTTCTCTC
TTTTTTCCCCCCCCTTCTTTCTCTCTCCCTCCTTTTCCCCTTTTTTCCCC
TCTCCCCTCCTTCTCCTCCCTTCCTCTCCCTTCTTCCTTTCTTCTCTTCC
CCCTTCCCCTTTCTTTCTTTTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCTCCAGAACTCACTCACGTAA
GGTGGAAGGACAACTGACTCCACATGTGCATGCACACGTGCACAAACATA
CATCCAATAATAATTCTTTTTTTTTTTTTTCTTCGAGACAGGGCTTCTCT
GTATAGCCCTGACTGTCCTGGAACTCACTCTGTAGGCCAGGCTGGCCTCA
AACTCAGAAATCCACCTGTCTCTGCCTCTCAAGTGTTGAGATTAATTAAA
GGTGTGCACCACCACTGCAAGGCTTCCAATAATAATTCTTAAGTAATTGC
TTTTTTCTCCTATTATGAACCATCAGCAACTTATCTACAGACTCACTCCA
GTAATGTTGCCATCCCGACCACTCATGGACTGAAGCACAGCTTTATCCAA
TCCCAACTTGAGGCTAGCTTTATCAAACATCTCTCTCTCATAGGAATTAC
GAGTGATGAGTCGGTACACCTTCACAGCTTTGCTCTGTCCAATTCGATGA
CAACGTGCTTGGGCCTGGTTAAACAGAGAACAAAGAGATACATAATATTA
AGTCTCACACTCAAACACTCAAAACCAATCAATTTCAAAAAGAAATTTCT
GCCACATCTTGTGGACTAGGAGTCATAGCTTGGATGTTTATCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_l08.g1 MSMg01no047_l08.g1 CHROMAT_FILE:
MSMg01no047_l08.g1 PHD_FILE: MSMg01no047_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:06 2005
         (584 letters)



>mm_chr14_52834328_52835311
          Length = 984

 Score = 1129 bits (584), Expect = 0.0
 Identities = 584/584 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctccagaactcactcacgtaaggtggaaggacaactgactccacatgtgcatgcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catctccagaactcactcacgtaaggtggaaggacaactgactccacatgtgcatgcaca 260

                                                                       
Query: 61  cgtgcacaaacatacatccaataataattcttttttttttttttcttcgagacagggctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtgcacaaacatacatccaataataattcttttttttttttttcttcgagacagggctt 320

                                                                       
Query: 121 ctctgtatagccctgactgtcctggaactcactctgtaggccaggctggcctcaaactca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctgtatagccctgactgtcctggaactcactctgtaggccaggctggcctcaaactca 380

                                                                       
Query: 181 gaaatccacctgtctctgcctctcaagtgttgagattaattaaaggtgtgcaccaccact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatccacctgtctctgcctctcaagtgttgagattaattaaaggtgtgcaccaccact 440

                                                                       
Query: 241 gcaaggcttccaataataattcttaagtaattgcttttttctcctattatgaaccatcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaggcttccaataataattcttaagtaattgcttttttctcctattatgaaccatcag 500

                                                                       
Query: 301 caacttatctacagactcactccagtaatgttgccatcccgaccactcatggactgaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caacttatctacagactcactccagtaatgttgccatcccgaccactcatggactgaagc 560

                                                                       
Query: 361 acagctttatccaatcccaacttgaggctagctttatcaaacatctctctctcataggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagctttatccaatcccaacttgaggctagctttatcaaacatctctctctcataggaa 620

                                                                       
Query: 421 ttacgagtgatgagtcggtacaccttcacagctttgctctgtccaattcgatgacaacgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttacgagtgatgagtcggtacaccttcacagctttgctctgtccaattcgatgacaacgt 680

                                                                       
Query: 481 gcttgggcctggttaaacagagaacaaagagatacataatattaagtctcacactcaaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcttgggcctggttaaacagagaacaaagagatacataatattaagtctcacactcaaac 740

                                                       
Query: 541 actcaaaaccaatcaatttcaaaaagaaatttctgccacatctt 584
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actcaaaaccaatcaatttcaaaaagaaatttctgccacatctt 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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