BAC Information

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BAC

Clone NameMSMg01-047P17
Chromosome14 (Build37)
Map Location 78,668,164 - 78,668,371
singlet/doubletsinglet
Overlap genenone
Upstream geneD230005D02Rik, LOC676171, EG629678, Gm1587, Dnajc15, Epsti1, AU021034
Downstream geneTnfsf11, LOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047P17.T7 (MSMg01no047_p17.b1)MSMg01-047P17.TJ (MSMg01no047_p17.g1)
ACCAG277866AG277867
length722874
length of high quality
(start - end)
---213 (77 - 289)
definitionCHROMAT_FILE: MSMg01no047_p17.b1 PHD_FILE: MSMg01no047_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:25 2005CHROMAT_FILE: MSMg01no047_p17.g1 PHD_FILE: MSMg01no047_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCGGTGGTC
AGATCTGGAATGTTCCCTGTGTGACTGAATCTTCCAAGGTTTTCCCCAGA
TTCGCCTCGATAATTGTCAGCGCCTCCGCTTCCACGTGAAGTGACTTGAT
GCACTCAGACTTGACCTTACGACAAGGAGATAAATATGGATCGATTCACA
TTCTTCTACTAGACAACAACCAGTTGTGCCAGCACCAATTGATGATGATG
CTGACTTTCTTCCACTGGACGGTTATAGCTCCCTTGTCGAATATCTAGTG
ACCATAGTTGTGTGCCTTCATTTCTGGGACTTCCATTCTATTCCACTGGC
CTACTTGACTGTCTCTATACCAGTACCATGAAGCTTTTATCACCATTGCT
CTGCTGAAAACGCTTACGTCTGGCCTGCTGATTCCACCCAGAAGATCTTT
TATCCATCGAGAAGACTTTTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTCAACATTCATAGGGGCATCC
ACCTGAGAGGAACTCTAGCGGAAATCGCAACCCTTGCAGGTATGACATGA
TGGATCAGCTATGAAAAACAGGCTAACAAAAGGAAATGGAGGCATATATT
TCAGAAGTATGTGCAAGATACTCTGAATAAGTCATAGGGTTTTTGTTTTG
TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTGTTTGGCNCTCCACTCTC
AATCCAACTTGCCTATATACCCTCTCTTTTTCCCCCTTTTATTATTCCCG
CGCTTTTTATATTAATTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCCTT
CTTTTATTTTCTTTACTTCCTACATATTTCTACCCCCTCCCCTCATCATA
TAAAAAAAACATTACTCCCCTTGGGGCGGGAATTCCCCTTTTTCCGCCAT
TATGTCTCCGCTATCTTCGTTCTCTTTTTCCCTTATATTCTTCCTTCTGC
CCCTTATCTGTCCTATTCAATTATCTCTCCCATTTTCATCCTTCCCTCAC
ATCCTATTACTCTTCAACTTTTTTTTTCCCCCGCTCTCTTCTTTCCCTCT
CCACACTTGCTACTATGTGACTATTCCAGTCTAATACGCCAACCCCTACA
TACTCACAATCATATTTCCTTCCCCTTTACTCATCTCTCTTTTTCGCACT
CTCAACAACATATTCCCCGCTCTTCTCTCTACATTATTTCTCCTCTTCTA
CTTCTATTTACGTCATCCCTGTATTCCGCGTCCACACTACATCGTTTTCC
GCTGACTCATTCCTCGTTGTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_p17.g1 MSMg01no047_p17.g1 CHROMAT_FILE:
MSMg01no047_p17.g1 PHD_FILE: MSMg01no047_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:25 2005
         (213 letters)



>mm_chr14_78667964_78668576
          Length = 613

 Score =  327 bits (169), Expect = 3e-94
 Identities = 197/209 (94%), Gaps = 8/209 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcaacattcataggggcatccacctgagaggaactctagcggaaatc-gcaaccctt 59
           |||||||||| |||||| |||||||||||||||||||||||||||||||| | |||||||
Sbjct: 201 atttcaacatccataggagcatccacctgagaggaactctagcggaaatcag-aaccctt 259

                                                                       
Query: 60  gcaggtatgacatgatggatcagctatgaaaaacaggctaacaaaaggaaatggaggcat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcaggtatgacatgatggatcagctatgaaaaacaggctaacaaaaggaaatggaggcat 319

                                                                       
Query: 120 atatttcagaagtatgtgcaagatactctgaataagtcatagggtttttgttttgttttg 179
           || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 320 atctttcagaagtatgtgcaagatactgtgaataagtcatagggtttttgttttgttttg 379

                                        
Query: 180 ttttgttttgtt--ttg----ttttgttt 202
           ||||||||||||  |||    ||||||||
Sbjct: 380 ttttgttttgttgtttggggtttttgttt 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)