BAC Information

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BAC

Clone NameMSMg01-047P21
Chromosome14 (Build37)
Map Location 66,795,670 - 66,820,120
singlet/doubletdoublet
Overlap genePtk2b
Upstream geneFzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2
Downstream geneLOC100043676, Trim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047P21.T7 (MSMg01no047_p21.b1)MSMg01-047P21.TJ (MSMg01no047_p21.g1)
ACCAG277873AG277874
length707709
length of high quality
(start - end)
663 (45 - 707)629 (77 - 705)
definitionCHROMAT_FILE: MSMg01no047_p21.b1 PHD_FILE: MSMg01no047_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:26 2005CHROMAT_FILE: MSMg01no047_p21.g1 PHD_FILE: MSMg01no047_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,819,580 - 66,820,120)(66,795,670 - 66,796,266)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCTTGGTTTTGTCTTGAAGTCTTCTGGAGCGTTCATTCCCCACCC
TGTCTCGATGCATTCCTCCCACCCATGGTGGGCTCTCCAGATTGCAGATG
TCCTTTGGGTGCTGCTTGACACGAGGAAGGTGGAATCTAGCTCCCCAAAG
CAGCAGGCTCTGCACCCACTTCCACTCACTACATGACCTGCCCATCCCCA
CAAGCCTCCCAGACTCCCCAGAGGAAGAAGATAAAGGTATTGCAATACAT
AGCCCTGCCCTAACTTAGCAAGACACTTACCCCAAGGGCTTCAAATTTAG
TCCTGTCACCTAACTAGATACAGGGAATTAGGGGATGGATGCTTTTGTAC
CCCTTAATTCGTATGTTGAAGTTCTAATCCCTAATATGATAGATAGGAAC
ATAAGACCCTTTGGAAAGAACTAGCACTGAATATTAGTGTGTTCCCCAAA
ATACCAATGTTGAAACTTAATATTTAATATGGCAACATGGGAAGGCAAGG
CCTTTGGGGATGCGATAAAATCATGAATGGCATTAGAAGTCCTTAAGAAG
GGGTTGAGAGCCCAGTGAGCTGGGCCAGCAGTTAGGATTGCATACTGCTC
CTGCTGAAGGCTGAAATTTGGTTGCTAGCACCCATATCAATGGGTCACAA
CTGCATT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCAGGTCATTTCTTTCCTTCC
AGTACATGGGCTGGGTGTCAGGGTGACAGTGGGGACTGAACTCTGATTAT
TGAGTTTGGTGTTAGCCTCCTCTCTCTTGCCAGTCCTGGGTACATGTTGC
TTAACAAGATCTGTTAACAGAGAACCCCTAGTCCCTCCCAGACTTGGACA
GCTTGGCTTGAATAAATCTCATCCACAGAGCTCCCAGGTACCCCAGAAAT
GCTCACCTGGGGGGCACCCTCGATGCCCAGCTGCAGGACTGCCTGGGTCT
CTTCCAATGGGAGGTACCTGATGGATCTGATCTGCTTAAACTCGGCCAGG
CAGGTGGGCTGTGAAGGAAGCAGAGAAGACTGAAGACCATTTATCCTCAG
GATCTGACCAAGGAAACTGGTCAAGATGAGGGTGAAGATGAGGGGTGCGG
AATCTCTCTTGAGGATGGAGAGAATATCGCTGGCAAGTCTGTTTCAGAAA
CCGAAGATGCTCAGGTTGCAGAAGAAAAAGGGGAGAAAGGTGCTCTTGCC
AAGATTGTATGTCAGGTTGGGGGGTAGAGCCAGAGCTGGACCCAGGTTCC
CAGGAAGTCACTAGCTTGTTTTACCATCGAAGGGGGGACTCTTCCTTATG
CACCACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_p21.b1 MSMg01no047_p21.b1 CHROMAT_FILE:
MSMg01no047_p21.b1 PHD_FILE: MSMg01no047_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:26 2005
         (663 letters)



>mm_chr14_66819580_66820642
          Length = 1063

 Score = 1017 bits (526), Expect = 0.0
 Identities = 538/542 (99%), Gaps = 1/542 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcttggttttgtcttgaagtcttctggagcgttcattccccaccctgtctcga 64
           ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 541 gaatttatcttggttttgtcttgaagtcttctggagcgttcgttccccaccctgtctcga 482

                                                                       
Query: 65  tgcattcctcccacccatggtgggctctccagattgcagatgtcctttgggtgctgcttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgcattcctcccacccatggtgggctctccagattgcagatgtcctttgggtgctgcttg 422

                                                                       
Query: 125 acacgaggaaggtggaatctagctccccaaagcagcaggctctgcacccacttccactca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acacgaggaaggtggaatctagctccccaaagcagcaggctctgcacccacttccactca 362

                                                                       
Query: 185 ctacatgacctgcccatccccacaagcctcccagactccccagaggaagaagataaaggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctacatgacctgcccatccccacaagcctcccagactccccagaggaagaagataaaggt 302

                                                                       
Query: 245 attgcaatacatagccctgccctaacttagcaagacacttaccccaagggcttcaaattt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attgcaatacatagccctgccctaacttagcaagacacttaccccaagggcttcaaattt 242

                                                                       
Query: 305 agtcctgtcacctaactagatacagggaattaggggatggatgcttttgtaccccttaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agtcctgtcacctaactagatacagggaattaggggatggatgcttttgtaccccttaat 182

                                                                       
Query: 365 tcgtatgttgaagttctaatccctaatatgatagataggaacataagaccctttggaaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcgtatgttgaagttctaatccctaatatgatagataggaacataagaccctttggaaag 122

                                                                       
Query: 425 aactagcactgaatattagtgtgttccccaaaataccaatgttgaaacttaatatttaat 484
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 121 aactagcactgaatattagtgtgttccccaaaataccagtgttgaaacttaatatttaat 62

                                                                       
Query: 485 atggcaacatgggaaggcaaggcctttggggatgcgataaaatcatgaatggcattagaa 544
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 61  atggcaacatgggaaggcaaggccttt-gggatgcgataaaatcatgaatggcattagaa 3

             
Query: 545 gt 546
           ||
Sbjct: 2   gt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no047_p21.g1 MSMg01no047_p21.g1 CHROMAT_FILE:
MSMg01no047_p21.g1 PHD_FILE: MSMg01no047_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:26 2005
         (629 letters)



>mm_chr14_66795470_66796498
          Length = 1029

 Score = 1100 bits (569), Expect = 0.0
 Identities = 590/597 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctccaggtcatttctttccttccagtacatgggctgggtgtcagggtgacagtggggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctccaggtcatttctttccttccagtacatgggctgggtgtcagggtgacagtggggac 260

                                                                       
Query: 61  tgaactctgattattgagtttggtgttagcctcctctctcttgccagtcctgggtacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tgaactctgattattgagtttggtgttagcctcctctctcttgccagtcctggatacatg 320

                                                                       
Query: 121 ttgcttaacaagatctgttaacagagaacccctagtccctcccagacttggacagcttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcttaacaagatctgttaacagagaacccctagtccctcccagacttggacagcttgg 380

                                                                       
Query: 181 cttgaataaatctcatccacagagctcccaggtaccccagaaatgctcacctggggggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgaataaatctcatccacagagctcccaggtaccccagaaatgctcacctggggggca 440

                                                                       
Query: 241 ccctcgatgcccagctgcaggactgcctgggtctcttccaatgggaggtacctgatggat 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 ccctcgatgcccagctgcaggactgcctgggtctcttccaatgggaggcacctgatggat 500

                                                                       
Query: 301 ctgatctgcttaaactcggccaggcaggtgggctgtgaaggaagcagagaagactgaaga 360
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 ttgatctgcttaaactcggccaggcaggtgggctgtgaaggaagcagggaagactgaaga 560

                                                                       
Query: 361 ccatttatcctcaggatctgaccaaggaaactggtcaagatgagggtgaagatgaggggt 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaattatcctcaggatctgaccaaggaaactggtcaagatgagggtgaagatgaggggt 620

                                                                       
Query: 421 gcggaatctctcttgaggatggagagaatatcgctggcaagtctgtttcagaaaccgaag 480
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 621 gcggaatctctcttgaggatggagagaatatcgctggcaagtctgtctcagaaaccaaag 680

                                                                       
Query: 481 atgctcaggttgcagaagaaaaaggggagaaaggtgctcttgccaagattgtatgtcagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgctcaggttgcagaagaaaaaggggagaaaggtgctcttgccaagattgtatgtcagg 740

                                                                    
Query: 541 ttggggggtagagccagagctggacccaggttcccaggaagtcactagcttgtttta 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttggggggtagagccagagctggacccaggttcccaggaagtcactagcttgtttta 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)