Query= MSMg01no048_i07.b1 MSMg01no048_i07.b1 CHROMAT_FILE:
MSMg01no048_i07.b1 PHD_FILE: MSMg01no048_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:33 2005
(324 letters)
>mm_chr14_64721018_64721741
Length = 724
Score = 580 bits (300), Expect = e-170
Identities = 318/324 (98%), Gaps = 2/324 (0%)
Strand = Plus / Minus
Query: 1 cagtgaggggcagaaatgatgggaaagctccccatcctttgtttcttac-ccagatcctg 59
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 523 cagtgaggggcagaaatgatgggaaagctcccca-cctttgtttcttacaacagatcctg 465
Query: 60 tggttctcactatttataaacacttgggccctggggttggggtgggggcagggtcacatg 119
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 464 tggttctcactatttataaacacttgggccctggggttggggtgggggcagtgtcacatg 405
Query: 120 tgcatgtaaaatggagtaaaccattcatagagatttcccagaacttcccgtacatgccac 179
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 404 tgcatgtaaaatggagtaagccattcatagagatttcccagaacttcccgtacacgccac 345
Query: 180 ccccaccccgctgttctacatagcttccaggagaacacatttgtgttatccccatttgtg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ccccaccccgctgttctacatagcttccaggagaacacatttgtgttatccccatttgtg 285
Query: 240 ccccaaacaatctccaagcactcacattttaaccaaaacatgggatcaggcctggtggca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ccccaaacaatctccaagcactcacattttaaccaaaacatgggatcaggcctggtggca 225
Query: 300 caggtctgtaatcccaggcctgaa 323
||||||||||||||||||||||||
Sbjct: 224 caggtctgtaatcccaggcctgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space: 225225
Effective search space used: 225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no048_i07.g1 MSMg01no048_i07.g1 CHROMAT_FILE:
MSMg01no048_i07.g1 PHD_FILE: MSMg01no048_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:33 2005
(605 letters)
>mm_chr14_64536173_64537176
Length = 1004
Score = 1116 bits (577), Expect = 0.0
Identities = 598/605 (98%), Gaps = 1/605 (0%)
Strand = Plus / Plus
Query: 1 taataagtgaaagaacaaggagccagggttatacgatctgaacacaaggcccaacctcag 60
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 201 taataagtgaaagaacaaggagccagggttatatgagctgaacacaaggcccaacctcag 260
Query: 61 acctggcccacagccatcaatgagacctctgttacattattgggccaccttcccagtgcc 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctggcacacagccatcaatgagacctctgttacattattgggccaccttcccagtgcc 320
Query: 121 cgtgtctatgcatggctatgggtgtgtgcccttacatgggaggcaagatctttcttgtcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtgtctatgcatggctatgggtgtgtgcccttacatgggaggcaagatctttcttgtcc 380
Query: 181 atcagtctggcattggcaagtactgagagccttaaagaaggtatttcaatctgtcatgca 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 atcagtctggcattggcaagtactgagagccttaa-gaaggtatttcaatctgtcatgca 439
Query: 241 gaatgccagtcctcactcaacatttgaggaacaaaaggactgagtggcctggttttggag 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaattccagtcctcactcaacatttgaggaacaaaaggactgagtggcctggttttggag 499
Query: 301 tcctaaggctgctaatttctatttctttcaaaatagcctgatgagataccagcaacattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcctaaggctgctaatttctatttctttcaaaatagcctgatgagataccagcaacattt 559
Query: 361 gctgactgacagaggttttgtgtgtctgtgtgtgtgagcatgtgcacaggcactctctgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gctgactgacagaggttttgtgtgtctgtgtgtgtgagcatgtgcacaggcactctctgg 619
Query: 421 attccttcagtatcagtctgttgtaggccacaattccttggagggagggggggtccaatg 480
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 620 attccttcagtatcagtctgttgtaggtcacatttccttggagggagggggggtccaatg 679
Query: 481 acaggtgttgcctaagaccttcagaaaatacagatatttatattacaattcatagcagtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acaggtgttgcctaagaccttcagaaaatacagatatttatattacaattcatagcagtg 739
Query: 541 gaaaatttgcaattatgaagtagcaataaaatagttttattacaacataaggaactgtgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaaaatttgcaattatgaagtagcaataaaatagttttattacaacataaggaactgtgt 799
Query: 601 taagg 605
|||||
Sbjct: 800 taagg 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1004
Length adjustment: 10
Effective length of query: 595
Effective length of database: 994
Effective search space: 591430
Effective search space used: 591430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
