BAC Information

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BAC

Clone NameMSMg01-048P04
Chromosome14 (Build37)
Map Location 123,398,584 - 123,399,185
singlet/doubletsinglet
Overlap genenone
Upstream genePhgdhl1, Timm8a2, Tm9sf2, LOC621710, Clybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca, BC006662, 4930594M22Rik, Tmtc4
Downstream geneVgcnl1, Itgbl1, LOC668700, Fgf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048P04.T7 (MSMg01no048_p04.b1)MSMg01-048P04.TJ (MSMg01no048_p04.g1)
ACCAG278574AG278575
length1,1891,180
length of high quality
(start - end)
682 (76 - 757)606 (127 - 732)
definitionCHROMAT_FILE: MSMg01no048_p04.b1 PHD_FILE: MSMg01no048_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:26 2005CHROMAT_FILE: MSMg01no048_p04.g1 PHD_FILE: MSMg01no048_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACC
TGAGGAATGCCCAATGACAGACCAGCACCTGAAAAAAATGTTCAGCATCC
TTACTCATCAGGGAAATGCCCATCAAAACAACCCTGAGATTCCACCTCAC
TCTAGTCAAAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGC
GAGGATGTGGAGAAAGAGGAACACTCCTCCTTGGTGGGATTGCAAGCTTG
TACAACCACTCTGGAAATCAGTCTGGCTGTTCCTTAGAAAATTGGACATA
GTACTACCAGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGA
TGTTCTAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCTTCCT
TATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAG
AAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGC
TATTAAAAAGAATGAATTCATGAAATTCCTAGCCAAATGGATGGACCTAG
AGGGCATCATCCTGAGTGAGGTAACACAATCACAAAGGAACTCACACAAT
ATGTACTCACTGATAAGTTGATATTAGCCCAAAACTTAGGATACACAAGA
TATAAGATACAATTTGCTAAACGCATCAAACTCAAGAAGAATGAAGACCA
AAGTGTGGACACTGTGCCCCTTTTTAGAATTGGGACCAAAACACCCATGG
AAGGAGTTACAGAGACAAAGTTAGGAGCTGAGACAAAAGGATGGACCTTT
AGAGACTGCCATATCCAGGGATCCACCCCATAATCCGTTTCCAAATGCTG
ACACCATTGCATACCCTAGCAAGATTTTTGCTGAAAGGGCCCAGATATAG
CTGTCTCTTGTGAAACTATTGCGGGACCTACCAAACACAGAAGTGGAAGC
TCCCGGCCCGCTAATGGATGGATCCCGGGCCTCCCAATGGAGGAGCTTAG
GAAAGTACTCCAGGAACTCTAAGGTAATTTGCCACCCTATTCCCTGGAAA
ACCCTTTTTGTAACTTCCCGTATCCCCGGGAGTCTTTTGACTTTCAGCTC
ATTTTGGCTCTCACAAAAATGTCCAATACCGGTCCATCATGGGAAAAAGA
AGAGCCCTTGTGTGCCCCCCCCAATTTTTTATTTCCCCC
NNCCAATCATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCCATAAAGACCCCCGAAGCATGGNGGTAGGCA
GGTAGGCATCCTATAAAACTACTAGCTGAATGCTCACATTTTGATCCACC
AGCATGAAACATAGTGAACCAAACAAGAATGGCATGGAATTTTGATACCT
AAAAGTGTACCCTCCAGTGACACTCCTCCTCCAACAAGGCCCATGCCTCC
TACTCATTCTCAAACAGTTCCACCAACTGGCGACCAAATATCCAAACACA
CAAGCCCATTGGAGCCTGTGAGGAGCCAGACCAACCCAAGACTTTCTCAG
AGGCCCTGATGAAAGGGCAAAGAAAACTTTAGTTCTGTGATCAGGAATAG
ACTTCACAAATTGGTCTCATGCTGGAGCCAGTGGCTCAGAGGAGTCAAGG
TTGTGGATTTTGGGGACATGACTCTTCCCCTGGGCTGTGGTTATTAGTCC
TTAGGGAGTCCTTAGGGAGTTGTGTCTGAGATATCCTGTTTTCTGTCAAC
ATTGTCTGTTTAACTCTCTACCAACCTTGGCCATTTCCCCTCTTGCAAAT
AGTATAGAGGCCATTGTATTTCTTAATTAACTTGCTTGGTGTGATGGTTT
GTATATGCTCGACCCAGGGAGTGGCACTATTAGAAGGTGTGGCTTAGTTG
GAGTAGGGATGGCCTTGTTGGAGTAGGTATGGCTGTGGGCTTGAAGACCC
TCATTCTAGATGCCTGGAAGCCAATATTCTGCTAGCCACCTTCAAATGAA
GATGTACTCTCAGCTCCTCCTGTACCATCTCAGCCTGAATGCTGCCATGT
TCCCACCCCTGATGACCCTGGACTGAAACTCTGAACTTGTAAACTCTAAA
CCAGCCCCAATTAAATGATGTCCTTTATAAAATTTGCCTTGGGACATGGT
GCCTGTTCCCCTCTGCAAACCCCTAAAACCCTTTGCATAAATCATCACCT
TATGCAGGAACCCATGTCTTTGTTGTTCCCAAATTTCCCCAAACCCTTTC
CCTCAACCATTCCAAACCCTTTATTCTTTTAGTCCCCACGTCATAGGGCC
CTTTCTCCTTTTCCATCCACCCCAAGAACCCTCCCTGTTGTAGGGTACTT
ATTATTTATCCTCCCTGCTACCCCTAACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_p04.g1 MSMg01no048_p04.g1 CHROMAT_FILE:
MSMg01no048_p04.g1 PHD_FILE: MSMg01no048_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:26 2005
         (606 letters)



>mm_chr14_123398384_123399389
          Length = 1006

 Score = 1141 bits (590), Expect = 0.0
 Identities = 599/602 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaatgctcacattttgatccaccagcatgaaacatagtgaaccaaacaagaatggcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaatgctcacattttgatccaccagcatgaaacatagtgaaccaaacaagaatggcatg 260

                                                                       
Query: 61  gaattttgatacctaaaagtgtaccctccagtgacactcctcctccaacaaggcccatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaattttgatacctaaaagtgtaccctccagtgacactcctcctccaacaaggcccatgc 320

                                                                       
Query: 121 ctcctactcattctcaaacagttccaccaactggcgaccaaatatccaaacacacaagcc 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ctcctactcattctcaaacagttccaccaactggggaccaaatatccaaacacacaagcc 380

                                                                       
Query: 181 cattggagcctgtgaggagccagaccaacccaagactttctcagaggccctgatgaaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattggagcctgtgaggagccagaccaacccaagactttctcagaggccctgatgaaagg 440

                                                                       
Query: 241 gcaaagaaaactttagttctgtgatcaggaatagacttcacaaattggtctcatgctgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaagaaaactttagttctgtgatcaggaatagacttcacaaattggtctcatgctgga 500

                                                                       
Query: 301 gccagtggctcagaggagtcaaggttgtggattttggggacatgactcttcccctgggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccagtggctcagaggagtcaaggttgtggattttggggacatgactcttcccctgggct 560

                                                                       
Query: 361 gtggttattagtccttagggagtccttagggagttgtgtctgagatatcctgttttctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtggttattagtccttagggagtccttagggagttgtgtctgagatatcctgttttctgt 620

                                                                       
Query: 421 caacattgtctgtttaactctctaccaaccttggccatttcccctcttgcaaatagtata 480
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 caacattgtctgtttaactctctaccaaccttggctatttcccctcttgcaaatagtata 680

                                                                       
Query: 481 gaggccattgtatttcttaattaacttgcttggtgtgatggtttgtatatgctcgaccca 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 681 gaggccattgtatttcttaattaacttgcttggtgtgatggtttgtatatgctcaaccca 740

                                                                       
Query: 541 gggagtggcactattagaaggtgtggcttagttggagtagggatggccttgttggagtag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gggagtggcactattagaaggtgtggcttagttggagtagggatggccttgttggagtag 800

             
Query: 601 gt 602
           ||
Sbjct: 801 gt 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)