BAC Information

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BAC

Clone NameMSMg01-049G19
Chromosome14 (Build37)
Map Location 50,705,929 - 50,706,693
singlet/doubletsinglet
Overlap genenone
Upstream gene4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726
Downstream geneOlfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049G19.T7 (MSMg01no049_g19.b1)MSMg01-049G19.TJ (MSMg01no049_g19.g1)
ACCAG278883AG278884
length1,1551,216
length of high quality
(start - end)		677 (83 - 759)765 (89 - 853)
definitionCHROMAT_FILE: MSMg01no049_g19.b1 PHD_FILE: MSMg01no049_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:25 2005CHROMAT_FILE: MSMg01no049_g19.g1 PHD_FILE: MSMg01no049_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:25 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCCATTTGNNNNNNTTCAGTGGGCGCTAAGACTCCTAAGGGAGXXXXXX
XXXXXXXXXXXXXXXTGTACAGCACTCCGTAAATCATTCTGGAGGTTCCT
AAAAAATTGGACATAGTACTACCGGAAAATCCAGCAATACCACTCTTGGG
CATATACCCAGAAGAAGTTCCAACTGGTAATAAGAACACATTCTCCACTA
TGTTCATAGCAGCCTTATTTATAGTAGCCAGAAGCTGGAAAGAACCCGGA
TGTCCCTAAATAGAAGAATGGATACAGAAAATGTGGTATATTTACACAAT
GGAGTACTACTCAGCTATTAAAAACAATGAATTTATTAAATTCTTGGACA
AATGGATGTATCTGGAGGATATCATTCTTATTGAGGTAACCCAATCAGAA
AAGAAGTCATTAGATATGTACTCACTGATAAGTGGAAATTAGTCCAGAAA
CATAGAACACCCAAGAAACAATTTGCAAAACACAAGAAAGTCAAGAAGAG
GGAAGAACAATGGGTGGATACTTTGTTCCTTTTTACAAAAGGGAACAAAA
TACCAATGAAAGGAGTTACAGAGGCAAAGTTTGGAACTATCCACAGACTA
CTCCACCCAGGAATCCATCCCATAATCAGCCACCAAACCCAGACACTATT
GAATATGCCAGCAATATTTTGATGAAGGGACCCTGGAATAGCTGTCTCAT
ATGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCACAGTCA
TCTATAAAATGGAACACACGGCACCCAAATGAAGAAGCTAGAGAAAGCAC
CCAAGTAGCTGAAGGGGTCTGCAACCCAGTAGGTGGAACAACAATATGAA
CTAACCAGTAACCCCATATCTCGTGTCTCTAGCTGCATATGTAGCAGAAG
ATGACCTAGCCGGCCATCACTTGGAAAGAAAGGCCCCCTTTTAATTCCCA
AGAACAGGGGAATGCCAGGGGCCAGAAACCCCCCAGGGTTAAGGTAAGGG
AACCAGGCCCGTGGTAAAAAAAAAGGGAACTTTTCGGAAAATTCTTTTGA
ATGGTTTTTTAAGGGAAAATTTTTTTTTTACAACATCTTTTTTAAAAACT
TGAAAAAGTGAATTTTTTCTATTTTTTCTTGTGGGGAATTGGTAAAATAT
AAACC

NCCCTACTTTTNNNNAAACATGGAGNCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCTCCTCCAGATACTTCTG
TCAGATTGCCCCAAGAAGCTGCTGTTGCTTCTTTCCATCTTACTGTTCCT
TATGGGGTATATATAAAATCCCAGCAAAGTGCTTCTACCTGTATTACTGT
CTTTCCTGCCTATAAAGGTCCTGTGTGACAGGAGCCTAAGAGCTGTGAAT
TCTAAAAAATAAGAAAAAGTTGAAAAGCTAAAAAAAAAGTGGTACTTTCT
CCAATGAAAGTTTTTCTAATATGTGTTTTTCACAAATATATTATTCTTTA
AAACTCTATACTTCTTAAACATTTCTGAGTTTCTTCATGCACTTGTTTCA
GTGGATTACACAATAAAAAACTAAACTAGTTTCTTGCTGGGTTCTGACAT
GTTGGATATGTGAACTTCAAAAGCATTCTTTGAATTTTGTTCTGAAAGAT
AATTAAGATTATTCATCATTTACTTCCCTATGTGCAAACTACCCAGTGAA
ACTCAAGCAGAGATGAAGAAGTGAGGAGTTATGATCTAAGGAGACACTGA
TATTTACAGTTGCTAGAAATAATAAAAAAACCACCGTTTAAGACATGATT
TAGATATAAAGTACTTGCAAATTAAGATAGTCTAATATTCCTTTGTAGAT
TACCTTCTAATTTTCTTATTTCTATATATGGTTGTAAGCTATACAAGAAG
GAATATGTTGAGATAAAATATAACATAGTAAGTCTGTAGGGACAAAGATT
ATTCTCACAGTATAAATTCCTAGAGTACACAATTACTTGTTCAAAACTTG
AATATTTTGAGATTCTTTCAATTAGTCTCTCTGTCTCTGTCTCTCTCTTT
CANGGNATGTGTGTGCCTGTGTCTGTGTGCAGTTTCTGTCTTCATTAACA
CTACTGAATGTGTATGAAAAAGCTTAACTTAAATGAAACTTTTTTTTTTT
ACATTTTTTTTCTTTCCATTTTTTTTAAGGATTTAGCTCATTTAAATTCC
AATGCTAATACCAAAAGGCCCCCTTACCTTCTTTTCTCTTTTCCCTTTTT
TCCTCTTTCTTTTTTTTGTNTTTTTTTTTTCTCCTTTTTCTNTCTTTTTT
TTTTTTTTTTTACCTTTGTTTTTCTTTCCACTTAATTATATCTTTATCTT
TTTCTTTTTAATTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_g19.g1 MSMg01no049_g19.g1 CHROMAT_FILE:
MSMg01no049_g19.g1 PHD_FILE: MSMg01no049_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:25 2005
         (765 letters)



>mm_chr14_50705729_50706893
          Length = 1165

 Score = 1471 bits (761), Expect = 0.0
 Identities = 764/765 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagatacttctgtcagattgccccaagaagctgctgttgcttctttccatcttactgttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 cagatacttctgtcagattgccccaagaagctgctgttgcttctttccatcttactgttc 906

                                                                       
Query: 61  cttatggggtatatataaaatcccagcaaagtgcttctacctgtattactgtctttcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 cttatggggtatatataaaatcccagcaaagtgcttctacctgtattactgtctttcctg 846

                                                                       
Query: 121 cctataaaggtcctgtgtgacaggagcctaagagctgtgaattctaaaaaataagaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 cctataaaggtcctgtgtgacaggagcctaagagctgtgaattctaaaaaataagaaaaa 786

                                                                       
Query: 181 gttgaaaagctaaaaaaaaagtggtactttctccaatgaaagtttttctaatatgtgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gttgaaaagctaaaaaaaaagtggtactttctccaatgaaagtttttctaatatgtgttt 726

                                                                       
Query: 241 ttcacaaatatattattctttaaaactctatacttcttaaacatttctgagtttcttcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ttcacaaatatattattctttaaaactctatacttcttaaacatttctgagtttcttcat 666

                                                                       
Query: 301 gcacttgtttcagtggattacacaataaaaaactaaactagtttcttgctgggttctgac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gcacttgtttcagtggattacacaataaaaaactaaactagtttcttgctgggttctgac 606

                                                                       
Query: 361 atgttggatatgtgaacttcaaaagcattctttgaattttgttctgaaagataattaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 atgttggatatgtgaacttcaaaagcattctttgaattttgttctgaaagataattaaga 546

                                                                       
Query: 421 ttattcatcatttacttccctatgtgcaaactacccagtgaaactcaagcagagatgaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttattcatcatttacttccctatgtgcaaactacccagtgaaactcaagcagagatgaag 486

                                                                       
Query: 481 aagtgaggagttatgatctaaggagacactgatatttacagttgctagaaataataaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aagtgaggagttatgatctaaggagacactgatatttacagttgctagaaataataaaaa 426

                                                                       
Query: 541 aaccaccgtttaagacatgatttagatataaagtacttgcaaattaagatagtctaatat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aaccaccgtttaagacatgatttagatataaagtacttgcaaattaagatagtctaatat 366

                                                                       
Query: 601 tcctttgtagattaccttctaattttcttatttctatatatggttgtaagctatacaaga 660
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tcctttgtagattactttctaattttcttatttctatatatggttgtaagctatacaaga 306

                                                                       
Query: 661 aggaatatgttgagataaaatataacatagtaagtctgtagggacaaagattattctcac 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aggaatatgttgagataaaatataacatagtaagtctgtagggacaaagattattctcac 246

                                                        
Query: 721 agtataaattcctagagtacacaattacttgttcaaaacttgaat 765
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agtataaattcctagagtacacaattacttgttcaaaacttgaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 765
Length of database: 1165
Length adjustment: 10
Effective length of query: 755
Effective length of database: 1155
Effective search space:   872025
Effective search space used:   872025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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