Query= MSMg01no050_g16.b1 MSMg01no050_g16.b1 CHROMAT_FILE:
MSMg01no050_g16.b1 PHD_FILE: MSMg01no050_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:42 2005
(712 letters)
>mm_chr14_93543976_93545088
Length = 1113
Score = 1253 bits (648), Expect = 0.0
Identities = 686/700 (98%), Gaps = 5/700 (0%)
Strand = Plus / Minus
Query: 16 gaattctgacagcaaaataattc--cgattaaaggaagggaatagtctgaggatttctgt 73
||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||
Sbjct: 913 gaattctgacagcaaaataattctgagat--aaggaaggaaatagtctgaggatttctgt 856
Query: 74 attatttcaaaaactctaactactcagcgattcctttatctaaatggtctttttcctttc 133
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 855 attattttaaaaactctaactactcagtgattcctttatctaaatggtctttttcctttc 796
Query: 134 ttcttgagttttgaaagactgattggaaattttaggcttcttctcactgtctttaataat 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ttcttgagttttgaaagactgattggaaattttaggcttcttctcactgtctttaataat 736
Query: 194 tcctataaaatctga-tttttttactacatatgatgcatataatattctacaaattatca 252
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 735 tcctataaaatctgattttttttactacatacgatgcatataatattctacaaattatca 676
Query: 253 ggttctgtttatttattagtgctatctcaattttaagaagtgaaatcttgacacagaaac 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ggttctgtttatttattagtgctatctcaattttaagaagtgaaatcttgacacagaaac 616
Query: 313 agattaaataaatgtatcaaaatgcaaaaacgccaaggtaatttaatgacactgtgacaa 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agattaaataaatgtatcaaaatgcaaaaacgccaaggtaatttaatgacactgtgacaa 556
Query: 373 tgattaaaataatagagttgtagccatatgtatcgtagagtagggtgagaggcattattt 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgattaaaataatagagttgtagccatatgtatcgtagagtagggtgagaggcattattt 496
Query: 433 gaaagcatcacattatacttgcgacctccagcctcacagatgatgtccctgaatcctaga 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 495 gaaagcatcacattatacttgcgacctccagcctcacagatgatgtccctgaatcctcga 436
Query: 493 gctggctttctgcaactggacttgaagttgaactttaagttgccaggggcactgagaact 552
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 435 gctggctttctgcaactggacttgaagttgaactttaagttgtcaggggcactgagaact 376
Query: 553 tttggggtccaggaaaactgcataatccaggaaatccaaaggttctgtatagctaggctt 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tttggggtccaggaaaactgcataatccaggaaatccaaaggttctgtatagctaggctt 316
Query: 613 cattcaaatgggcatttttgataattactattacgtaatttactattatcttacaacaaa 672
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 315 cattcaaatgggcatttttgataattactattacgtaatttaatattatcttagaacaaa 256
Query: 673 taacccaaaatacatgttttcataaaccctcttgtgggct 712
||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 taacccaaaatacatgttttcataaaccctcttgtgggct 216
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1113
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1103
Effective search space: 774306
Effective search space used: 774306
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no050_g16.g1 MSMg01no050_g16.g1 CHROMAT_FILE:
MSMg01no050_g16.g1 PHD_FILE: MSMg01no050_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:42 2005
(762 letters)
>mm_chr14_93518579_93519742
Length = 1164
Score = 1367 bits (707), Expect = 0.0
Identities = 749/763 (98%), Gaps = 2/763 (0%)
Strand = Plus / Plus
Query: 2 tctttgtctatatttaaaattgcttagtacagaaaggcatccgatagaaagaaatcaatt 61
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 202 tctttgtctatatttaaaattgcttagtacagaaaggcatctgagagaaagaaatcaatt 261
Query: 62 attccataaatagttc-tttttttttccatgtgaaaatttacctccctctcattattttt 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 attccataaatagttcttttttttttccatgtgaaaatttacctccctctcattattttt 321
Query: 121 gttagtcatgtcatattttggaccttttagacaggtagacatatacattcaaaaggtctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gttagtcatgtcatattttggaccttttagacaggtagacatatacattcaaaaggtctg 381
Query: 181 gaaaatttctaacgaagtgatcattcctgattagaagtagaaatatctgaatgttctctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gaaaatttctaacgaagtgatcattcctgattagaagtagaaatatctgaatgttctctc 441
Query: 241 ttttactataactaacaaaagagagttggcatggtattgctggaaacaaacaaactggtg 300
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 442 ttttactataactaacaaaagagagttggcatggtattgctagaaagaaacaaactggtg 501
Query: 301 gatgaatcctgctttttgtcttaatggcatcatgaactggcgttacactgcctgaatctg 360
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 502 gatgactcctgctttttgtcttaatggcatcatgaaatggcgttacactgcctgaatctg 561
Query: 361 aacatggccaaagttactgtaaggcaaacagcaagctgtcgttacaattcagaaacattt 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 562 aacatggccaaagttactgtaaggcaaacagcaaactgtcgttacaattcagagacattt 621
Query: 421 t-tttatatcatttgcatatgttcatttaagagaaagaccagtttgaaaatattgcacgt 479
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 622 tatttatatcatttgcatatgttcatttaagagaaagacaagtttgaaaatattgcacat 681
Query: 480 tatatctttatcaatatatttaatgatcacaattatcaacattacacataaaagtttata 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tatatctttatcaatatatttaatgatcacaattatcaacattacacataaaagtttata 741
Query: 540 taaagtaaatgtcaacataaattatattgatgatatagcccattctcataatttaatatt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 taaagtaaatgtcaacataaattatattgatgatatagcccattctcataatttaatatt 801
Query: 600 tcagaactgtaatgatcacaatctgatggttgattgacctagatctttgagttattaatc 659
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 802 tcagaactgtaatgatcacaatctgacggttgattgacctagatctttgagttattaatc 861
Query: 660 ttactggatatagcagaaatgtcagcattaatattttcattatttcaagttcttattaat 719
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 ttaatggatatagcagaaatgtcagcattaatattttcattatttcaagttcttattaat 921
Query: 720 gctgacatccacttaagttatgttaaatttactccacttatgt 762
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 gctgacatccacttaagttatgttaaatttactccacttatgt 964
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 762
Length of database: 1164
Length adjustment: 10
Effective length of query: 752
Effective length of database: 1154
Effective search space: 867808
Effective search space used: 867808
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
