BAC Information

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BAC

Clone NameMSMg01-050N15
Chromosome14 (Build37)
Map Location 83,237,100 - 83,237,627
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773, LOC100043279
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050N15.T7 (MSMg01no050_n15.b1)MSMg01-050N15.TJ (MSMg01no050_n15.g1)
ACCAG279800AG279801
length1,2041,184
length of high quality
(start - end)		751 (30 - 780)651 (76 - 726)
definitionCHROMAT_FILE: MSMg01no050_n15.b1 PHD_FILE: MSMg01no050_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:43 2005CHROMAT_FILE: MSMg01no050_n15.g1 PHD_FILE: MSMg01no050_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAACATTGGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATT
CTTTGTTCAGTTCTGAGCCCCTTTTTTTAATGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTG
TCTTATTGACGGTGTCTTTTGACTTGCAGAAACTTTGGAGGTTCATTAGG
TCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTT
CAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTAAGTGAAGTTCCTTGATCCAC
TTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCAATTCGCATTCT
TCTACATGATAACAACCAGTTATGCCAGCACCAATTGTTGAAAATGCTGT
CTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCA
TAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTAC
TTATCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGT
AGTAAAGCTTCAGGTCAGGCATGGTGATTCCACCAGAGGCTCTTTTATCC
TTGAGAACAGCCTTTGCTATCCTAGATTTTTTTTTCTTTCCATTTTTTAC
TAGGTATTTAGCTCATTTACATTTCCAATGCTATACCCACAAGTCCCCCA
TACCCACCCACCCCCAATTCCCCTACCCGTCCAACTCCCCCTTTTTTTGG
CCTGGCGTTCCCCCTGTTTCTGTGGTATAATAAGGTTTGTTGTGGCCCAA
TGGACCCTTTCTTTTTCCAGTGATGGCCCGAAATAGGCCTTTTTTCCGAT
TCTTATTTGCATCTTTAATTCTAAAATTTTCCTTGGTTCTATTTTTTTAT
TTCCTTACTTGTTGGATCTCCTCCTTATTGTGCTTTATCTAAATCCCCTT
TTTCCTTCCCTCGGGATAACTTTTCCCCATAGTTCCCTCTCTTTTGAGCA
ACCCTCCTGGTTTATCTCACTTCTCTTATCTTTTGTATGTTGTCTGTNTC
TCTCTNTTTTTTCTTGCTTTTTTTTNTCTTGTACTCTCCTCTCCTTTATC
AACC

TTTTTTNNTAGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATAAAAGACACCATCTTATCATGG
AATATTTAGATAAATTTGATCACAGCATGAAAATATTACCCATATATAAG
CTCTATTTGTTATATATTTAAAATTTCATGATATATGTTTTCGATGGGAA
CACTTTTTATTTTTGCTTTTGTCATTTATTTGTAATAGTTTTTGGAAAAA
AATTCTTGTTTTTCTAGAAATAAAGCATTATGACTAATGTAAATAAATGA
ATATGTATAATTCAACTCACATATTTATCTTAAAATTATGATGGAAGAAC
ATTTATTTTCTTTAATTTCACGCTTGAAAATTATTATTTATAAAATTACT
TGACTAGACCCTTTCTGAATGGTGTAGATTATCCATTCATGTAGGAATAA
TATATTTGGAAGAGATGCTCCTAATACAATTTCTGATTCATAGTTCTCTT
TCTCTGAGAAATGATTAGTCTTTGAGGTAAATTTGGTGGTAGTCTCTGAG
AGGTCATTTCTAATATCATGAAAAGAAAGAGAACATTTTCACCAACTATT
TTCTATTCAGAACAAATCTACTTTCAACTGACAGAATGATAGATCCTTAA
ATTTTAGTAAAGAATTGGCTTGTCTCTTGTGGCGGCATGAATGATAATGA
CTTCCACAGGCTCATATTGATGAAGGTTTGTTTCTCAGTTGCTGGGATTG
TTTAGTTAGGATTAGCAGATACCTCATTNTACAGGAGGTATCTCACTTGA
GGTGGATTTTGTTGTGGTCCAGAATTCCTCCCACAAAACACACGAATACT
TACGTTTAACAGGAAAAATATTAAATGCCCTCCCAACGATTGAGCAGGGC
AACACCTCCTGATTGAAAACTCAAACTGGAAGCCTGAATTTTCTGAAGGC
CCACTTATAAAGGCTTAAACCCCCAAACCCCCCAATAAATAATCTGCTGG
AAATCTTCTGGCTGGCTTCTTCTTCCCGAACTTAAATTCATTTTTTAAAC
CTAACCCCCTCCTTATTGATCTTTATATGGGGCCCTATTCTGTAAAAATT
TTAGTGTTTTTGTTAAATTTTCTTTAAAAATTTAACCAATAGGTCCCCTC
ACCCTTTCAACAAAATTCTACCCGGGTTATTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_n15.g1 MSMg01no050_n15.g1 CHROMAT_FILE:
MSMg01no050_n15.g1 PHD_FILE: MSMg01no050_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:43 2005
         (651 letters)



>mm_chr14_83236577_83237627
          Length = 1051

 Score =  959 bits (496), Expect = 0.0
 Identities = 520/528 (98%), Gaps = 1/528 (0%)
 Strand = Plus / Minus

                                                                        
Query: 125  acactttttatttttgcttttgtcatttatttgtaatagtttttggaaaaaa-attcttg 183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 1051 acactttttatttttgcttttgtcatttatttgtaatagtttttggaaaaaattttcttg 992

                                                                        
Query: 184  tttttctagaaataaagcattatgactaatgtaaataaatgaatatgtataattcaactc 243
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 991  tttttctagaaataaagcattaagactaatgtaaataaatgaatatgtataattcaactc 932

                                                                        
Query: 244  acatatttatcttaaaattatgatggaagaacatttattttctttaatttcacgcttgaa 303
            |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 931  acatatttatcttaaaattatgatggaagaacatttattttcttgaatttcaagcttgaa 872

                                                                        
Query: 304  aattattatttataaaattacttgactagaccctttctgaatggtgtagattatccattc 363
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 871  aattattatttataaaattacttgactagaacctttctgaatggtgtagattatccattc 812

                                                                        
Query: 364  atgtaggaataatatatttggaagagatgctcctaatacaatttctgattcatagttctc 423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811  atgtaggaataatatatttggaagagatgctcctaatacaatttctgattcatagttctc 752

                                                                        
Query: 424  tttctctgagaaatgattagtctttgaggtaaatttggtggtagtctctgagaggtcatt 483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751  tttctctgagaaatgattagtctttgaggtaaatttggtggtagtctctgagaggtcatt 692

                                                                        
Query: 484  tctaatatcatgaaaagaaagagaacattttcaccaactattttctattcagaacaaatc 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691  tctaatatcatgaaaagaaagagaacattttcaccaactattttctattcagaacaaatc 632

                                                                        
Query: 544  tactttcaactgacagaatgatagatccttaaattttagtaaagaattggcttgtctctt 603
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 631  tactttcaactgacagaatgatagatcattaaattttagtaaagaattggcttgtctctt 572

                                                            
Query: 604  gtggcggcatgaatgataatgacttccacaggctcatattgatgaagg 651
            ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 571  gtggcggtatgaatgataatgacttccacaggctcatattgatgaagg 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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