BAC Information

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BAC

Clone NameMSMg01-051E21
Chromosome14 (Build37)
Map Location 117,754,957 - 117,755,505
singlet/doubletsinglet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051E21.T7 (MSMg01no051_e21.b1)MSMg01-051E21.TJ (MSMg01no051_e21.g1)
ACCAG280112AG280113
length1,2221,410
length of high quality
(start - end)
550 (82 - 631)---
definitionCHROMAT_FILE: MSMg01no051_e21.b1 PHD_FILE: MSMg01no051_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:48 2005CHROMAT_FILE: MSMg01no051_e21.g1 PHD_FILE: MSMg01no051_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTTTTTNNNNTACATTGCGCGCTAAGACTACTAAGGGAGAGGATCCGC
GGAATTATATTCATGTCCTTAACAATATAAGATCTTTTCTGGTTTTAATC
TACTACAGATCCTCCTGTTCTGTCCACCCCTTCAGCAATCTTCCTTTTGA
CCTCTAACTTTTCTGAGTTTAGCATCTCTTTCAATGATTTCCTCACCTCA
ACCAAAACTGACAAGAGAATCCTCCATCTACATCCAACTTCAACTCCTAA
TTTTATGGAGACAAATTTGGACTCCCTTTTTGGCTCAGGCTGCTTCACAT
TGCTTGCCTGGTTGTGTGTTTGTTTGTTTGTAATTGAGATTTTCTTAAAA
TCAATGGTCATTTGCAACAGTATGGTAATTCCTCTTTAATCTAATCTAAT
ACTTTTTATCTTAAAATCTACTTTGATTACATTACTAGCCATGAAATTCT
TTTAATCATTCAGTGAGAAACTTTTTTCTTGTAAGAGTGAGACAGCCTCA
TGCTTAGTATAATAAATTCTGGTGTTTGAAACTCTTACTTACCCGTTTGT
ATCACTTTATAATTTAAGATTTCTCTTTACTTATCTCTTTCACTTATGCA
TGAAATTTGCCATGTTTCCTTTACTTAATAAGCACTTTCAGCATCCATTC
TTAATTATCAGCACTTGTTATAAGCTAGCACAGGTTATTTCTTAGTTCTG
CGTGCTCCTAATATGTCATGAACAGTAATGATCTTGCCCCTGTTGATAAT
CATGACTTATTTTTATGCTCATTTTTCTTTACTTTCATCATTTATTCTGG
AACCTAAAACTGAATTCTTATTTACACATCTTTTCTTCTCATTATATTCA
GTTGTCCTTTTCCTGACTTTTATATTTGTCTTTATTCTTTCTATTTTTTT
TCTATTATATTTATATGTCTTTATTCATATATCTTATTTTCCTTATCAAT
TTATTTTACTATACNTTATTTTCTTTTCTTTATATTTTTTTCTTTCTTCC
TCATTTATTTATTTACTGTTTTCTTATTATTATGCATTTATTTTCCTTTA
ATCATTATATCTTTCATTTCTTTATCTCTTTCTTTTTTACTTTTTTAATT
TACTCTTTCTTTTCTTTATATTTTCATATACTTCCTTTTTTTTTATTCTT
CCTTTTTTTTACTTCATTTCTTTTATTTACTTTGTACTCTCCTTTTCTTT
TATTTCCTATTAGTTATTTTTT
TTTTNGTTGCTAGGCAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTCTTATAGAACTCAATGGCTCTGTTCCATT
TTAGGAGGGACCCTTTATAAACTGCCTGTGCACACTCTTTTTANATTCAT
CCTGTAACAGCTGTTTGGGCAGCCTGCTGTCATCTATATTCTCTGCTTGG
ACAACCCCAATAAACTGTTATGACAAGTATCACTTTAATCAATTAATCAA
CACAAAATGTGCTATACCTGGTGTGAAAGGATAGGACATCTTTTTCTTAA
AAATCTATTTCGAGTGTTTATGATACTACTTTTTTTGTACTGATTATGTT
TAATGTCATATTAGTATTATTATTAACTCTTCTATTTATGCCCATAGAGT
ATTTTTTTTTTTTATGACATTTAGTATTCTTTTTTTTTGAGATTATTTTT
TCATTCCTTTTTTTTTTCTCCCTCCTTTATTTTTTTTTTATTTTTCTATT
AAAAAAAAAACTTTTTTATTTTTTTTTTATTTTATCTATCATTATTTTTT
TTCATTCTTTTTTTTTTTTTTTTTTTTTCTTCTTCTTTTTCTCTTTACCT
TCTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTATATTATATTATTTTT
TTTCTTTTTTTATTTTTAATCTTTTTCTTTCTTTTTCTTTTTTTTATTTT
TTTTTTTATTTTTTTTATTTCTTATTCTTATTTTTTTTTTTTTTTTTCTT
TTTTCCTCTTTTTTTTTTTCTTTTTTCTACTTTTTTTTATTTTTTTTTTT
TTTATTTATATTATATTTCTTTTTTTATTTTTTTTTCTTTTTATTTTTTT
TTCCTATATATTTATTATTTTTAATATATCTATTTTTTTTTTTTATTTTA
TTTTATGTATATAATCATTTCTTATTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTATATTTTTCTTTTTCATTTATTTTCTTTTTTCTTTATATTTTTTA
TTTATTTTATTTATTTATTACTTATTTATTTTTCTTTTTTTCTTTTTTAT
TTATATTTTTTACTATTTATTTTTTTATTTTATCTTTTTTATTTCTTTTN
TCTTTTATACTTTTTATTTATTTTTTTATATTTTTTTATTTATATTTCTT
CTTTTTATTATTTCTTTCATTTTTTTACCTTTATTATTTTATTCTTTATA
TATTCTTTATATATTATATATTATTTATATATTTTTTTTTTCCTTTTTCA
TTTATTTCTACTTTCTTTATTATTTATCTCATATCTTCTTTATTTTTTTA
TATTTATTTTATTATATTTTTTTTTTTTATTTTTATCTTATTTCTTTTAT
TTATTTTATTTCTTTTATTTATTTATATTCTACTTTTATAAATTTTTATT
ATTATATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_e21.b1 MSMg01no051_e21.b1 CHROMAT_FILE:
MSMg01no051_e21.b1 PHD_FILE: MSMg01no051_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:48 2005
         (550 letters)



>mm_chr14_117754757_117755705
          Length = 949

 Score =  955 bits (494), Expect = 0.0
 Identities = 536/550 (97%), Gaps = 1/550 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttttctggttttaatctactacagatcctcctgttctgtccaccccttcagcaatct 60
           |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 201 atcttttctggttttaatctactacagatccttctgctctgtccaccccttcagcaatct 260

                                                                       
Query: 61  tccttttgacctctaacttttctgagtttagcatctctttcaatgatttcctcacctcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccttttgacctctaacttttctgagtttagcatctctttcaatgatttcctcacctcaa 320

                                                                       
Query: 121 ccaaaactgacaagagaatcctccatctacatccaacttcaactcctaattttatggaga 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaaactgaccagagaatcctccatctacatccaacttcaactcctaattttatggaga 380

                                                                       
Query: 181 caaatttggactccctttttggctcaggctgcttcacattgcttgcctggttgtgtgttt 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 caaatttggactccctttttggctcaggctgcttcacattgcttgcttggttgtgtgttt 440

                                                                       
Query: 241 gtttgtttgtaattgagattttcttaaaatcaatggtcatttgcaacagtatggtaattc 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 gtttgtttataattgagattttcttaaaatcaatggtcatttgcaacagtatgataattc 500

                                                                       
Query: 301 ctctttaatctaatctaatactttttatcttaaaatctactttgattacattactagcca 360
           ||||||||||||||||||||| |  || ||||||||||||||||||||||||||||||||
Sbjct: 501 ctctttaatctaatctaatacctagtaccttaaaatctactttgattacattactagcca 560

                                                                       
Query: 361 tgaaattcttttaatcattcagtgagaaacttttttcttgtaagagtgagacagcctcat 420
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 tgaaattcttttaatcattcagtgagaaacctttttcttgtaagagtgagacagcctcat 620

                                                                       
Query: 421 gcttagtataataaattctggtgtttgaaactcttacttacccgtttgtatcactttata 480
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 621 gcttagtataataaattctggtgtttgaaactcttacttactcgtttgtatcattttata 680

                                                                       
Query: 481 atttaagatttctctttacttatctctttcacttatgcatgaaatttgccatgtttcctt 540
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 atttaagatttctctttacttatct-tttcacttatgcatgaaatttgccatgtttcctt 739

                     
Query: 541 tacttaataa 550
           ||||||||||
Sbjct: 740 tacttaataa 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 949
Length adjustment: 10
Effective length of query: 540
Effective length of database: 939
Effective search space:   507060
Effective search space used:   507060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)